BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495211
Length=911
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51400.1 | Symbols: | PLAC8 family protein | chr5:20878613-... 1376 0.0
> AT5G51400.1 | Symbols: | PLAC8 family protein | chr5:20878613-20880134
REVERSE LENGTH=995
Length=995
Score = 1376 bits (745), Expect = 0.0
Identities = 866/922 (94%), Gaps = 17/922 (2%)
Strand=Plus/Plus
Query 1 CACTCTTCGGTTTCTCCAATCCTTCATATGATGTCTGACGGAGGAGCACCGTCGAGGTAC 60
||||||||||||||||||||||||||||||||||| |||||||||||||||||||| |||
Sbjct 72 CACTCTTCGGTTTCTCCAATCCTTCATATGATGTCGGACGGAGGAGCACCGTCGAGATAC 131
Query 61 GTGAAGTTGACAAAGGAACAAGCTCCGGTCGATGAGATTAATCCCGGCGAACTTAATCAG 120
||||||||||| ||||||||||||||||||||||||||| ||||||| ||||| ||||||
Sbjct 132 GTGAAGTTGACGAAGGAACAAGCTCCGGTCGATGAGATTCATCCCGGTGAACTCAATCAG 191
Query 121 CCGATTGAAGTTTCTCATCTAGCTGTTCACAAATGTAATGAGTGTGGCCAACCTTTGCCT 180
|| |||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 192 CCCATTGAAGTTTCTCATCTAGCTGTTCACAAATGCAATGAGTGTGGCCAACCTTTGCCT 251
Query 181 GAGAATTTTGAAGCTCCTGCTGATGAGCCATGGACTACCGGAATATTCGGCTGCACCGAG 240
||||||||||||||||||||||||||||| |||||||||||||||||||||||||| |||
Sbjct 252 GAGAATTTTGAAGCTCCTGCTGATGAGCCCTGGACTACCGGAATATTCGGCTGCACTGAG 311
Query 241 GACATGAATAGTTTTTGGCTGGGACTTTTTTGCCCAAGTGTTCTATTTGGGCGTGTCTAT 300
||||||||||||||||||||||||||||| |||||||||||||||||||| |||||||||
Sbjct 312 GACATGAATAGTTTTTGGCTGGGACTTTTCTGCCCAAGTGTTCTATTTGGACGTGTCTAT 371
Query 301 GAAACTCTGAGTGACGAGGAAACCTCATGGACA-AAAGCATGTATTTGCCATTCCATTGT 359
|||||||||||||| ||||||||||| |||| | ||||||||||||||||||||||||||
Sbjct 372 GAAACTCTGAGTGATGAGGAAACCTCGTGGA-AGAAAGCATGTATTTGCCATTCCATTGT 430
Query 360 AGTAGAAGGCGGTCTTACTGCTGCATCGATGCTTACTTGTGTTCCCGGTATTGATCCGCA 419
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 431 AGTAGAAGGCGGTCTTACTGCTGCATCGATGCTTGCTTGTGTTCCCGGTATTGATCCGCA 490
Query 420 TACGTCTTTTCTTATATGGGAAGGTTTGATGTTTGTTTGGTGGATGTGTGGGATATACAC 479
||| ||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 491 TACTTCTTTACTTATATGGGAAGGTTTGTTGTTTGTTTGGTGGATGTGTGGGATATACAC 550
Query 480 CGGAAATGTCCGCCAAACTCTACAAAGGAAATATCATCTCCAGAACGCTCCATGTGATCC 539
||||||||||| |||||||||||||||||||||||||| ||||| ||||||||||||||
Sbjct 551 TGGAAATGTCCGTCAAACTCTACAAAGGAAATATCATCTTCAGAATGCTCCATGTGATCC 610
Query 540 ATGTATGGTGCATTGTTGCCTTCACTTTTGTGCGGTTTGCCAAGAGCACCGTGAGATGAA 599
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 611 ATGTATGGTGCATTGTTGCCTTCACTTTTGTGCGGTTTGTCAAGAGCACCGTGAGATGAA 670
Query 600 GAACCGTCTTTCGGATAACTTTGTGATGCCCATGACTGTTATTAACCCGCCACCGGTTCA 659
||| |||||||||||||||||||||||||| ||||||||||| ||||| |||||||||||
Sbjct 671 GAATCGTCTTTCGGATAACTTTGTGATGCCTATGACTGTTATCAACCCACCACCGGTTCA 730
Query 660 AGAAATGAGTGCCTCTGGTGACAGAGACCA-C-C-ACCACAACTCTGTCCCGGTTTCACA 716
||| |||||||| ||||||||||||||||| | | ||||||||||||| |||||||||||
Sbjct 731 AGAGATGAGTGCTTCTGGTGACAGAGACCAACACCACCACAACTCTGTTCCGGTTTCACA 790
Query 717 CCATAGCTCTGATCTTGAGATGCGGCCATTGTAGTC-TCAATG-TTCCCCACCAGATTCA 774
|||||||||||||||||||||| ||||||||||||| |||||| ||||||| ||||||||
Sbjct 791 CCATAGCTCTGATCTTGAGATGAGGCCATTGTAGTCCTCAATGGTTCCCCATCAGATTCA 850
Query 775 AGGTTTTGTTTTGCCTGAATCTA-CTTTATAT--GTAAACCGATTTGGTTTGTTTCAAAA 831
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||
Sbjct 851 AGGTTTTGTTTTGCCTGAATCTAACTTTATATATGTAAACCGATTTGGTTTGTTTCAAAC 910
Query 832 TCAAACTTATATACTAGATA-G-ATTCTGGTTTTCCATGTATAATCATGATTTATCCTTG 889
||| | ||| | ||||| | ||||||||||||| ||| ||||||||||||||| ||
Sbjct 911 TCA---T-ATAGA-TAGATTCGGATTCTGGTTTTCCTTGTGTAATCATGATTTATCATTA 965
Query 890 TCTCAAAATTAAGATTTTCTAT 911
||||||||||||||||||||||
Sbjct 966 TCTCAAAATTAAGATTTTCTAT 987
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44507454242
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5