BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495215
Length=714
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51440.1 | Symbols: | HSP20-like chaperones superfamily pro... 1000 0.0
> AT5G51440.1 | Symbols: | HSP20-like chaperones superfamily protein
| chr5:20891163-20892211 FORWARD LENGTH=910
Length=910
Score = 1000 bits (541), Expect = 0.0
Identities = 620/657 (94%), Gaps = 10/657 (2%)
Strand=Plus/Plus
Query 1 TCTCTTTCCAAAAATGGCGTCATCATCGTCCTTAGCTCTCAAGAGACTTCTCTCTTCTTC 60
|||||||||||||||||||||||||||| | |||||||||| ||||||||||||||||||
Sbjct 67 TCTCTTTCCAAAAATGGCGTCATCATCGGCTTTAGCTCTCAGGAGACTTCTCTCTTCTTC 126
Query 61 CACCGTCGTCGTCCCTCGCGCCTTAAGAGCCGTTCGTCCGGTGGCTGCTTCTTCTCGCCT 120
|||||||| |||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 127 CACCGTCGCCGTCCCTCGCGCCTTAAGAGCCGTTCGTCCGGTGGCTGCTTCATCTCGCCT 186
Query 121 CTTCAATACCAACGCCGTCAGAAACTATGATGACGGCGTCGATAGGAACCATAACTCAAA 180
||||||||||||||||| |||||||||||| ||||| ||||||||||||||| |||||||
Sbjct 187 CTTCAATACCAACGCCGCCAGAAACTATGAAGACGGTGTCGATAGGAACCATCACTCAAA 246
Query 181 CCGACATGTTACTCGCCGCGGCGGCGATTTCTTCTCAGATAT-CTTCGATCCGTTTACTC 239
|||||||||| |||||| ||||||||||||||||||| |||| | |||||||||||||||
Sbjct 247 CCGACATGTTTCTCGCCACGGCGGCGATTTCTTCTCACATATAC-TCGATCCGTTTACTC 305
Query 240 CGACGAGAAGCTTGAGCCAGATGCTGAATTTCATGGACCAGGTCAGCGAAATCCCTTTGG 299
| ||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 306 CAACGAGAAGCTTGAGCCAGATGCTGAATTTCATGGACCAGGTAAGCGAAATCCCTTTGG 365
Query 300 TAGCAGCTACGCGTGGAATGGGAGCTTCTGGAGTTAGACGTGGCTGGGACGTGAAAGAGA 359
|| ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||||||
Sbjct 366 TATCAGCTACTCGTGGAATGGGAGCTTCTGGAGTTAGACGTGGTTGGAACGTGAAAGAGA 425
Query 360 AAGACGACGCGTTGCATCTAAGGATAGATATGCCGGGACTAAGCAGAGAGGATGTGAAAT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 426 AAGACGACGCGTTGCATCTAAGGATAGATATGCCGGGACTAAGCAGAGAGGATGTGAAAT 485
Query 420 TGGCTTTGGAACAGAACACATTGGTGATTAAAGGAGAAGGGAAAACAGAGGAAGGAGAGG 479
|||||||||||||||||||||||||||||| |||||||||| |||||||||| || |||
Sbjct 486 TGGCTTTGGAACAGAACACATTGGTGATTAGAGGAGAAGGGGAAACAGAGGA-GG-GAG- 542
Query 480 AGGGAGATGGTTCTGGAGATGGACGGAGGTTTACGAGTAGGATTGGGTTACCTGAGAAAG 539
| ||||| ||||||||||||||||||||||||||||||||||| |||||| |||||||
Sbjct 543 A---AGATGTTTCTGGAGATGGACGGAGGTTTACGAGTAGGATTGAGTTACCGGAGAAAG 599
Query 540 TATACAAGACTGATGAGATTAAGGCGGAGATGAAGAATGGTGTGTTGAAAGTGGTGATTC 599
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 600 TATACAAGACTGATGAGATTAAGGCGGAAATGAAGAATGGTGTGTTGAAAGTGGTGATTC 659
Query 600 CTAAAG-TTAAAGAGGAGGAGCGTAACAATGTTCGTCACATAAATGTTGACTAGAGT 655
| |||| |||||||||| |||||||||||| ||||||||||||| ||||||||||||
Sbjct 660 C-AAAGATTAAAGAGGATGAGCGTAACAATATTCGTCACATAAACGTTGACTAGAGT 715
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34611327283
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5