BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495217

Length=528
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51451.1 | Symbols: RGF5 | Encodes a root meristem growth fa...   745    0.0  


> AT5G51451.1 | Symbols: RGF5 | Encodes a root meristem growth 
factor (RGF).  Belongs to a family of functionally redundant 
homologous peptides that are secreted, tyrosine-sulfated, and 
expressed mainly in the stem cell area and the innermost 
layer of central columella cells. RGFs are required for maintenance 
of the root stem cell niche and transit amplifying cell 
proliferation.  Members of this family include: At5g60810 
(RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), 
At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 
(RGF8) and At5g64770 (RGF9). | chr5:20898108-20898763 
FORWARD LENGTH=537
Length=537

 Score =  745 bits (403),  Expect = 0.0
 Identities = 495/538 (92%), Gaps = 11/538 (2%)
 Strand=Plus/Plus

Query  1    CGAGGTTTAAATGTCcttttccttttgtagtttctttctctctttttgactcatctttgg  60
            ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| |||||
Sbjct  1    CGAGGTTTATATGTCCTTTTCCTTTTGTTGTTTCTTTCTCTCTTTTTGACTCATGTTTGG  60

Query  61   cttttcccatgagcttttcCAGCACATTCATCTGGATTGATTAAA-AATACACTTGTTTA  119
            ||||||||||||||||||||||||||||||||||||||||||||| || | |||||||||
Sbjct  61   CTTTTCCCATGAGCTTTTCCAGCACATTCATCTGGATTGATTAAATAAAAAACTTGTTTA  120

Query  120  TTCTGGGGTTTAATTCTTACTTTCAAATACTTATGTGTGAACTTACTCTTATTATATAAT  179
            ||||| | |||||||||||| |||||||||||||| |||||||| ||||||||||||| |
Sbjct  121  TTCTGTGATTTAATTCTTACATTCAAATACTTATGCGTGAACTTGCTCTTATTATATAGT  180

Query  180  GT-CTTCTACCTACTAAGTCCTTTAACGTTTCATAATCCTCATAATCGTTAAGCCTTGTG  238
             | || ||||||| |||||| ||||||| |||||||||||| || ||||| |||||||| 
Sbjct  181  CTCCTACTACCTATTAAGTCTTTTAACGGTTCATAATCCTCTTAGTCGTTGAGCCTTGTA  240

Query  239  TGACTGTTTCTG-T-T--CAAATGAGCTCAATCCATGTTGCTTC--T-TTCCTTCTCTTG  291
            |||||| ||||| | |  | ||||||||||||||||||||||||  |  |||||||||||
Sbjct  241  TGACTGCTTCTGTTGTGACCAATGAGCTCAATCCATGTTGCTTCAATGATCCTTCTCTTG  300

Query  292  TTTCTCCTCTTGCATC-TTGCTGATTCTCGTCACCTCGACAATGTCCACATTACAGAGTC  350
            |||||| ||||||||| || |||||||||||||||||||||||||||||||||||| |||
Sbjct  301  TTTCTCTTCTTGCATCATT-CTGATTCTCGTCACCTCGACAATGTCCACATTACAGCGTC  359

Query  351  TCGGTTTTCGCTTGTCAAGGATCAAAACGTTGTCTCTGGTTCGACATCTAAAGAACCGGT  410
            ||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||| ||
Sbjct  360  TCGGTTTTCACTCGTCAAGGATCAAAATGTTGTCTCTAGTTCGACATCTAAAGAACCCGT  419

Query  411  TAAAGTTTCTCGGTTTGTGCCGGGTGCAGTGAAGCACCACCATCGTCGTCCACCGCTCTT  470
            ||||||||||||||||||||||||| || |||||||||||||||||||||||||||||||
Sbjct  420  TAAAGTTTCTCGGTTTGTGCCGGGTCCATTGAAGCACCACCATCGTCGTCCACCGCTCTT  479

Query  471  ATTTGCAGATTATCCGAAGCCGTCCACTCGGCCTCCACGCCATAACTGAAACCTCTCT  528
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  480  ATTTGCAGATTATCCGAAGCCGTCCACTCGGCCTCCACGCCATAACTGAAACCTCTCT  537



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 25267775941


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5