BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495217 Length=528 Score E Sequences producing significant alignments: (Bits) Value AT5G51451.1 | Symbols: RGF5 | Encodes a root meristem growth fa... 745 0.0 > AT5G51451.1 | Symbols: RGF5 | Encodes a root meristem growth factor (RGF). Belongs to a family of functionally redundant homologous peptides that are secreted, tyrosine-sulfated, and expressed mainly in the stem cell area and the innermost layer of central columella cells. RGFs are required for maintenance of the root stem cell niche and transit amplifying cell proliferation. Members of this family include: At5g60810 (RGF1), At1g13620 (RGF2), At2g04025 (RGF3), At3g30350 (RGF4), At5g51451 (RGF5), At4g16515 (RGF6), At3g02240 (RGF7), At2g03830 (RGF8) and At5g64770 (RGF9). | chr5:20898108-20898763 FORWARD LENGTH=537 Length=537 Score = 745 bits (403), Expect = 0.0 Identities = 495/538 (92%), Gaps = 11/538 (2%) Strand=Plus/Plus Query 1 CGAGGTTTAAATGTCcttttccttttgtagtttctttctctctttttgactcatctttgg 60 ||||||||| |||||||||||||||||| ||||||||||||||||||||||||| ||||| Sbjct 1 CGAGGTTTATATGTCCTTTTCCTTTTGTTGTTTCTTTCTCTCTTTTTGACTCATGTTTGG 60 Query 61 cttttcccatgagcttttcCAGCACATTCATCTGGATTGATTAAA-AATACACTTGTTTA 119 ||||||||||||||||||||||||||||||||||||||||||||| || | ||||||||| Sbjct 61 CTTTTCCCATGAGCTTTTCCAGCACATTCATCTGGATTGATTAAATAAAAAACTTGTTTA 120 Query 120 TTCTGGGGTTTAATTCTTACTTTCAAATACTTATGTGTGAACTTACTCTTATTATATAAT 179 ||||| | |||||||||||| |||||||||||||| |||||||| ||||||||||||| | Sbjct 121 TTCTGTGATTTAATTCTTACATTCAAATACTTATGCGTGAACTTGCTCTTATTATATAGT 180 Query 180 GT-CTTCTACCTACTAAGTCCTTTAACGTTTCATAATCCTCATAATCGTTAAGCCTTGTG 238 | || ||||||| |||||| ||||||| |||||||||||| || ||||| |||||||| Sbjct 181 CTCCTACTACCTATTAAGTCTTTTAACGGTTCATAATCCTCTTAGTCGTTGAGCCTTGTA 240 Query 239 TGACTGTTTCTG-T-T--CAAATGAGCTCAATCCATGTTGCTTC--T-TTCCTTCTCTTG 291 |||||| ||||| | | | |||||||||||||||||||||||| | ||||||||||| Sbjct 241 TGACTGCTTCTGTTGTGACCAATGAGCTCAATCCATGTTGCTTCAATGATCCTTCTCTTG 300 Query 292 TTTCTCCTCTTGCATC-TTGCTGATTCTCGTCACCTCGACAATGTCCACATTACAGAGTC 350 |||||| ||||||||| || |||||||||||||||||||||||||||||||||||| ||| Sbjct 301 TTTCTCTTCTTGCATCATT-CTGATTCTCGTCACCTCGACAATGTCCACATTACAGCGTC 359 Query 351 TCGGTTTTCGCTTGTCAAGGATCAAAACGTTGTCTCTGGTTCGACATCTAAAGAACCGGT 410 ||||||||| || |||||||||||||| ||||||||| ||||||||||||||||||| || Sbjct 360 TCGGTTTTCACTCGTCAAGGATCAAAATGTTGTCTCTAGTTCGACATCTAAAGAACCCGT 419 Query 411 TAAAGTTTCTCGGTTTGTGCCGGGTGCAGTGAAGCACCACCATCGTCGTCCACCGCTCTT 470 ||||||||||||||||||||||||| || ||||||||||||||||||||||||||||||| Sbjct 420 TAAAGTTTCTCGGTTTGTGCCGGGTCCATTGAAGCACCACCATCGTCGTCCACCGCTCTT 479 Query 471 ATTTGCAGATTATCCGAAGCCGTCCACTCGGCCTCCACGCCATAACTGAAACCTCTCT 528 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 480 ATTTGCAGATTATCCGAAGCCGTCCACTCGGCCTCCACGCCATAACTGAAACCTCTCT 537 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 25267775941 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5