BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495218
Length=1645
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51460.3 | Symbols: ATTPPA | Haloacid dehalogenase-like hydr... 2340 0.0
> AT5G51460.3 | Symbols: ATTPPA | Haloacid dehalogenase-like hydrolase
(HAD) superfamily protein | chr5:20902087-20904536 FORWARD
LENGTH=1581
Length=1581
Score = 2340 bits (1267), Expect = 0.0
Identities = 1445/1530 (94%), Gaps = 16/1530 (1%)
Strand=Plus/Plus
Query 121 GCAT-TTC-TCTCAGTGTCTATTTTTCTCTGAGGAAGAGGATTTTTAGAGAAGTGAAACC 178
|||| ||| | |||| |||||| ||||||||||||| ||||| ||| |||||| |||||
Sbjct 56 GCATCTTCATTTCAGGGTCTATATTTCTCTGAGGAATTGGATTCTTATAGAAGTTAAACC 115
Query 179 GTAGAGCTTCTTCTATTCAAGAATCCTCTGAGAAACTTTGATATA-TATATTTATAGTTG 237
| |||||||||||||| ||| | ||||||||||| | | |||||| | | | ||| | |
Sbjct 116 GCAGAGCTTCTTCTATCCAATAGTCCTCTGAGAATCGTCGATATAGTTTGCTGATA-TAG 174
Query 238 TTGTTATGGACATAAAATCTGGTCACTCGTCTCCTGTAATGACTGATTCTCCACCGATAA 297
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 175 TTGTTATGGACATGAAATCTGGTCACTCGTCTCCTGTAATGACTGATTCTCCACCAATAA 234
Query 298 GCAACTCAAGATTAACCATTCGTCAGAACAGACTCCCTTACTCATCAGCAGCAGCCACGG 357
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 235 GCAACTCAAGATTAACCATTCGTCAGAATAGACTTCCTTACTCATCAGCAGCAGCCACGG 294
Query 358 CTATCTCACAGAACAGCAATCTCTTACTAACCGTTCCAAGAAAGAAAACTGGGATCCTTG 417
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 295 CTATCTCACAGAACAACAATCTCTTACTAACCGTTCCAAGAAAGAAAACTGGGATCCTTG 354
Query 418 ATGATGTTAAGTCTAATGGTTGGCTTGATGCGATGAAATCTTCTTCTCCTCCTCCAACAA 477
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 355 ATGATGTTAAGTCTAATGGTTGGCTTGATGCGATGAAATCTTCTTCTCCTCCTCCTACAA 414
Query 478 TACTTAACAAAGATAACTTAACCAGTGATGCTGCGGATATGACTTATCGCGAATGGACGC 537
||||||||||||||||||||| || ||||||| |||||||||||||||||||||||| ||
Sbjct 415 TACTTAACAAAGATAACTTAAGCAATGATGCTACGGATATGACTTATCGCGAATGGATGC 474
Query 538 AGCTCAAGTATCCATCAGCTCTTACTTCTTTTGAGAAAATCATGAGTTTTGCAAAGGGTA 597
||||||||||||||||||||||||| ||||||||||||||||||||||||||||| || |
Sbjct 475 AGCTCAAGTATCCATCAGCTCTTACCTCTTTTGAGAAAATCATGAGTTTTGCAAAAGGCA 534
Query 598 AAAGAATAGCATTGTTTCTTGATTATGATGGGACACTTTCGCCTATAGTTGAGGAACCTG 657
|||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||||
Sbjct 535 AAAGAATAGCATTGTTTCTTGATTATGACGGGACACTTTCGCCTATTGTTGAGGAACCTG 594
Query 658 ATTGCGCATACATGTCAAGTGCTATGCGTAGTGCAGTGCAAAACGTTGCCAAGTATTTCC 717
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 595 ATTGTGCATACATGTCAAGTGCTATGCGTAGTGCAGTGCAAAATGTTGCCAAGTATTTCC 654
Query 718 CAACCGCGATCATTAGTGGAAGAAGCCGTGATAAGGTGTATGAGTTTGTTAGTTTAAGTG 777
| |||||||||||||||||||||||||| |||||||||||||||||||||| ||| ||||
Sbjct 655 CTACCGCGATCATTAGTGGAAGAAGCCGGGATAAGGTGTATGAGTTTGTTAATTTGAGTG 714
Query 778 AACTTTATTACGCTGGAAGCCATGGAATGGACATCATGAGTCCCGCAGGAGAATCTCTAA 837
||||||||||||| |||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 715 AACTTTATTACGCCGGAAGCCATGGAATGGACATCATGAGTCCCGCAGGAGAATCTTTAA 774
Query 838 ACCACGAACATAGCCGTACTGTATCAGTTAACGAACAGGGGAAAGATGTAAATCTATTCC 897
|||| |||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 775 ACCATGAACATAGCCGTACTGTATCAGTTTACGAACAGGGGAAAGATGTAAATCTATTCC 834
Query 898 AGCCTGCTAGCGAGTTTCTACCGATGATTGATAAGGTGCTTTGTTCGCTTATAGAGAGTA 957
||||||||||||||||||| |||||||| ||||||||||||||||| |||||||||||||
Sbjct 835 AGCCTGCTAGCGAGTTTCTCCCGATGATCGATAAGGTGCTTTGTTCTCTTATAGAGAGTA 894
Query 958 CAAAAGATATCAAAGGGGTAAAAGTAGAAGACAACAAGTTCTGTATCTCTGTGCATTACC 1017
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 895 CAAAAGATATCAAAGGGGTAAAAGTAGAAGACAACAAGTTCTGCATCTCTGTGCATTACC 954
Query 1018 GCAACGTAGAGGAAAAGAACTGGGCATTGGTTGCACAGTGTGTTGATGATGTCATCAGAA 1077
|||| ||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||
Sbjct 955 GCAATGTAGAAGAAAAGAACTGGACATTGGTTGCACAGTGTGTAGATGATGTCATCAGAA 1014
Query 1078 CATATCCAAAACTACGGCTAACACATGGCCGGAAGGTTTTAGAGATCCGTCCTGTGATTG 1137
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1015 CATATCCAAAACTACGGCTAACACATGGCCGGAAGGTTTTAGAGATCCGTCCTGTGATTG 1074
Query 1138 ACTGGGACAAAGGAAAAGCTGTGACATTCCTACTTGAATCTCTCGGCCTAAACAACTGTG 1197
||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||||
Sbjct 1075 ACTGGGACAAAGGGAAAGCTGTGACATTTCTACTTGAATCACTCGGCCTAAACAACTGTG 1134
Query 1198 AGGATGTTCTTCCAATCTATGTCGGGGATGATCGAACAGATGAAGATGCATTTAAGGTAT 1257
|||||||||||||||||||||| ||||||||||||||||| ||||||||||||||||||
Sbjct 1135 AGGATGTTCTTCCAATCTATGTTGGGGATGATCGAACAGACGAAGATGCATTTAAGGTAC 1194
Query 1258 TACGAGATGGACCAAACCACGGTTATGGTATATTAGTCTCTGCTGTGCCCAAAGACAGCA 1317
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 1195 TACGAGATGGACCAAACCACGGTTATGGTATATTAGTCTCTGCTGTGCCTAAAGACAGCA 1254
Query 1318 ATGCCTTTTACTCGCTTCGTGACCCCTCTGAGGTGATGGAGTTTCTGAAGTCATTGGTGA 1377
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1255 ATGCCTTTTACTCGCTTCGTGACCCGTCTGAGGTGATGGAGTTTCTGAAGTCATTGGTGA 1314
Query 1378 CATGGAAGAGATCAATGGGTTAA-GTAGA-GAAGAAGAAGTAGAAGAAA-GTGGTTAACG 1434
||||||||||||||||||||||| ||||| |||||||| |||||||||| ||||||||||
Sbjct 1315 CATGGAAGAGATCAATGGGTTAAAGTAGAAGAAGAAGATGTAGAAGAAAAGTGGTTAACG 1374
Query 1435 TTAATGTATATTACAAATATGCAAGTTAATTAGAGGATTATTGTTACTTTTCGGCTTTAT 1494
||||| |||||||||||||||||||||| |||| |||||||||||||||||||||||
Sbjct 1375 TTAATATATATTACAAATATGCAAGTTA----GAGGTTTATTGTTACTTTTCGGCTTTAT 1430
Query 1495 ACAAA---TACCGTTGAGATTTAACTTAACGGTATCGGAGGAGAGATCACATGAAGGCTT 1551
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 1431 ACAAAAACTACCGTTGAGATTTAACTTAACGGTATCGGAGGAGAGATCACATGATGGCTT 1490
Query 1552 AAAACATGCCGGAGATCCTTTTTCCGATCAATCTCTTTATTTTCTATAACTGTAAATTCC 1611
|||||||||||||||| |||||||||| |||||||||||| ||||| |||||||||||||
Sbjct 1491 AAAACATGCCGGAGATACTTTTTCCGACCAATCTCTTTATCTTCTACAACTGTAAATTCC 1550
Query 1612 TCCATCTCCGGATTAATTCAA-ATCATTTT 1640
||||||||||||||||||||| | ||||||
Sbjct 1551 TCCATCTCCGGATTAATTCAAGA-CATTTT 1579
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81274682355
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5