BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495224

Length=615
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51520.1 | Symbols:  | Plant invertase/pectin methylesterase...   953    0.0  


> AT5G51520.1 | Symbols:  | Plant invertase/pectin methylesterase 
inhibitor superfamily protein | chr5:20925980-20926594 FORWARD 
LENGTH=615
Length=615

 Score =  953 bits (516),  Expect = 0.0
 Identities = 583/616 (95%), Gaps = 2/616 (0%)
 Strand=Plus/Plus

Query  1    ATGTCGCAAGTCCTCTACTCTCTAACGCTCGTCTTTGTTTTCTTCGCATCTACAAACATC  60
            ||||||||||||||||||||||||||| ||||||||||||||||||| || |||||||||
Sbjct  1    ATGTCGCAAGTCCTCTACTCTCTAACGATCGTCTTTGTTTTCTTCGCTTCGACAAACATC  60

Query  61   CAGATATCATCAGCCAGTCCATCATCCTACTCCCAAAACCACAAAACGTTCGTGAAAACG  120
            |||| | |||||| |||| |||||||||||||||||||||||||||||||||||||||||
Sbjct  61   CAGAAAACATCAGGCAGTGCATCATCCTACTCCCAAAACCACAAAACGTTCGTGAAAACG  120

Query  121  GCTTGCAATTCGACAACATACCCCGACAAATGCTACAAGTCCTTATCCTCTTACTCATCG  180
            |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct  121  GCTTGCAATTCGACAACATACCCCGACAAATGCTACAAGTCCTTATCCTCCTACTCATCG  180

Query  181  AATATCAAATCCGACCCCATCAAGCTATGCACCACCGCGCTTAACCTCAACGTGAAATCC  240
            ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||||||
Sbjct  181  AATATCAAATCCGACCCGATCAAACTATGCACCACCGCGCTTAACCTCAACGTGAAATCC  240

Query  241  GCAAAGGAAGCAACTTCCGTCGTTTCTAAGCTTTTCAAAAAGTCTCA-AAAGTCCACCGC  299
            |||||||||||||| ||||| || ||||||||| |||||| |||||| ||| || |||||
Sbjct  241  GCAAAGGAAGCAACGTCCGTTGTCTCTAAGCTTCTCAAAATGTCTCAGAAA-TCAACCGC  299

Query  300  CGGACGAAAGGATAAAATGTCACCGGAGACTCTTATTCTCAAGGACTGCCTCGAGGAGAT  359
            ||||||||||| |||||||| ||| ||| ||||||| ||||||||||| |||||||||||
Sbjct  300  CGGACGAAAGGGTAAAATGTTACCAGAGGCTCTTATACTCAAGGACTGTCTCGAGGAGAT  359

Query  360  GAAGGACGCAATTATTGAGCTCAAGCAAGCGGTCACGGAGATGAAGACTCTACAAGATGG  419
            ||||||| ||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct  360  GAAGGACACAATTATTGAGCTCAAGCAAGCGATCACGGAGATGAAGAATCTACAAGATGG  419

Query  420  TGGTTCGATGGCTGAGCATATTACGAACGTTAGGACTTGGGTGAGCTCGGCGTTGACCGA  479
            ||| || |||||||||||||| |||||||||||||| |||||||||||||||||||||||
Sbjct  420  TGGCTCTATGGCTGAGCATATAACGAACGTTAGGACGTGGGTGAGCTCGGCGTTGACCGA  479

Query  480  CGAAGGGACTTGTACGGACGGGTTCGAGGAGGTGAAAGTGAATAAAGAAACGAAGAAGAA  539
            ||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct  480  CGAAGGGACTTGTACGGACGGGTTCGAGGAGGTGAAAGTGAATAAAGAAACAAAGAAGAA  539

Query  540  GGTAAATAAGGTTGTTGAGGAACTTGCAACCACGACTAGTAATACTTTGGCGCTTATTAC  599
            |||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct  540  GGTAAATAAGGTTGTTGAGGAACTTGCAACGACGACTAGTAATACTTTGGCGCTTATTAC  599

Query  600  GAATCTACGTTACTAG  615
            ||||||||||||||||
Sbjct  600  GAATCTACGTTACTAG  615



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 29638146730


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5