BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495227
Length=707
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51545.1 | Symbols: LPA2 | low psii accumulation2 | chr5:209... 965 0.0
> AT5G51545.1 | Symbols: LPA2 | low psii accumulation2 | chr5:20936426-20937413
FORWARD LENGTH=736
Length=736
Score = 965 bits (522), Expect = 0.0
Identities = 626/675 (93%), Gaps = 12/675 (2%)
Strand=Plus/Plus
Query 1 AAAAATGGCGCTACAAATCCACTCTTCGTGTTTCTTCTCGACGAGACCCTATCATCTCTT 60
||||||||||||||||||||||||| |||||| |||||| ||||||||||||||||||||
Sbjct 5 AAAAATGGCGCTACAAATCCACTCTCCGTGTTCCTTCTCCACGAGACCCTATCATCTCTT 64
Query 61 CATCACTACCAGAAACCCTAGATTCGCAATCAAATGTCAAAATTCCCAAATCGAATCCGA 120
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 65 CTTCACTACCAGAAACCCTAGATTCGCAATCAAATGTCAAAATTCCCAAATCGAATCCGA 124
Query 121 GACAACAGAGGATCCAGCTCAACCCAAGAATTCAAGCGCTTCCGGCGTAGGATTCGGTTC 180
||||||||||||||| ||| | |||||||||||| ||||||||||||||||||||||
Sbjct 125 TACAACAGAGGATCCATCTCGTTCAAAGAATTCAAGCTCTTCCGGCGTAGGATTCGGTTC 184
Query 181 ATCGGCGTCTTCTTC-T--CCGGCTAAGAAATTGAGTGCAGCTACATCGGGAATTAAGAA 237
| ||||||||||||| | |||||||||||||||||||| ||||||||||||| |||||
Sbjct 185 ACCGGCGTCTTCTTCTTCGCCGGCTAAGAAATTGAGTGCGGCTACATCGGGAAACAAGAA 244
Query 238 AGGAAAAGGGAAGAGAGAGGTGAATCGGCGTGCTCCTGTGGAGAAACCTGTGTTTATGAG 297
||| ||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 245 AGGGAAAGGTAAGAGAGAGGTGAATCGGCGTGCTCCTGTGGAGAAACCTGTGTTCATGAG 304
Query 298 CGAGGAAGGAGCGGCCAAGGCAGAGGAACAGAGACGGAACGAGAACGCGTTTCTTCTTAC 357
||| ||||||||||||||||||||||| ||||||| ||||| |||||||||||||||||
Sbjct 305 CGAAGAAGGAGCGGCCAAGGCAGAGGAGCAGAGACAAAACGAAAACGCGTTTCTTCTTAC 364
Query 358 TTGGCTTGGGCTTGGTATCGTCATCCTCATCGAAGGGATTCTTCTCGCCGCTTCAGGATT 417
|||||||||||||||||||||||||||||||||||| ||| ||||||| |||||||||||
Sbjct 365 TTGGCTTGGGCTTGGTATCGTCATCCTCATCGAAGGCATTATTCTCGCTGCTTCAGGATT 424
Query 418 CCTCCCCGAAGAGTTGGATAAGTTGTTTGTCAAGTATGTGTATCCAGTGTTCACTCCATC 477
|||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 425 CCTCCCAGAAGAGTTGGATAAGTTGTTTGTGAAGTATGTGTATCCAGTGTTCACTCCATC 484
Query 478 GGTTGGGTTATTTGTGGCTGGGACAACTGCATATGGAGTTTTGAAGTACATACAGAATGA 537
||||| |||||| || |||||||||||||||||||||||| |||||||||||||||||||
Sbjct 485 GGTTGTGTTATTCGTAGCTGGGACAACTGCATATGGAGTTCTGAAGTACATACAGAATGA 544
Query 538 GAAAATGAAGGGTCAAGAGTGATACTATACAACCATGGATATTCT-AGCTTTC-CAGTGA 595
||||||||||||||||||||||||||||||||||||||||||| | ||||||| | ||||
Sbjct 545 GAAAATGAAGGGTCAAGAGTGATACTATACAACCATGGATATT-TGAGCTTTCTC-GTGA 602
Query 596 TTGACGTTAA----GTGTGTTGCAAGTAGGAGTTTGTGTATTGATCTGACCTTAGTCATT 651
|||| ||||| |||||||||||| |||||||||||| || || |||||||||||||
Sbjct 603 TTGATGTTAAATTAGTGTGTTGCAAGC-GGAGTTTGTGTAATGGTCGGACCTTAGTCATT 661
Query 652 GTATATGCAGAGAGA 666
|||||||||||||||
Sbjct 662 GTATATGCAGAGAGA 676
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 34259688254
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5