BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495229
Length=1634
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51590.1 | Symbols: | AT hook motif DNA-binding family prot... 1917 0.0
AT4G25320.1 | Symbols: | AT hook motif DNA-binding family prot... 448 1e-124
> AT5G51590.1 | Symbols: | AT hook motif DNA-binding family protein
| chr5:20956567-20959113 REVERSE LENGTH=1740
Length=1740
Score = 1917 bits (1038), Expect = 0.0
Identities = 1299/1414 (92%), Gaps = 61/1414 (4%)
Strand=Plus/Plus
Query 103 TCTGTCTTTAATTGTCGGAATCAGAATC-TTTCAGATGGAGGAGAGAGAAGGAACTAACA 161
||| || ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 151 TCT-TCCTTAATTGTCGGAATCAGAATCTTTTCAGATGGAGGAGAGAGAAGGAACTAACA 209
Query 162 T------CA---GAACCAGTTTTGGTCTGAAACAACATGAAGCTCCTCTTCTTCCTCCTC 212
| || |||||||||||||||||||||||||||| || | | |||||||||||
Sbjct 210 TCAACAACATCCCAACCAGTTTTGGTCTGAAACAACATGAAACT-C-C-TCTTCCTCCTC 266
Query 213 CTGGTTACCACATGGAACCACCACGGTCTGAAAACCCTAATCTTTTTCCGGTGGGTCAAT 272
|||||| || |||||||||||||||||||||||||||||||||||||||||||
Sbjct 267 CTGGTT---AC------CCACCACGGTCTGAAAACCCTAATCTTTTTCCGGTGGGTCAAT 317
Query 273 CCAGCACTTCCTCCGTCGCCGCCGCCGCCGTGAAAGCTTCTGAGAATGTTGCTCCTCCTT 332
|||||||||||| | |||||||||||| |||||| ||||||||||||||||||||||||
Sbjct 318 CCAGCACTTCCT-C--CGCCGCCGCCGCGGTGAAACCTTCTGAGAATGTTGCTCCTCCTT 374
Query 333 TTAGCTTAACAATGCCGGTGGAGAATTCTTCTTCTGACTTGAAGAAGAAGAGAGGGAGAC 392
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 375 TTAGCTTAACAATGCCGGTGGAGAATTCTTCTTCTGAGTTGAAGAAGAAGAGAGGGAGAC 434
Query 393 CGAGAAAGTATAACCCTGACGGCTCACTCGCTGTGACTCTCTCTCCAATGCCTATCTCCT 452
| |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |
Sbjct 435 CAAGAAAGTATAACCCTGACGGCTCACTCGCTGTGACTCTCTCTCCTATGCCTATCTCAT 494
Query 453 CCTCCGTTCCGTTGACGTCTGAGCTTGGTTCTCGGAAACGAGGAAGAGGGCGAGGAAGAG 512
||||||||||||||||||| ||| ||||||||||||||||||||||||| ||||||||||
Sbjct 495 CCTCCGTTCCGTTGACGTCGGAGTTTGGTTCTCGGAAACGAGGAAGAGGTCGAGGAAGAG 554
Query 513 GCAGA-G--GA--A-GAGGACGT------GGACAAGGAAGTAGAGAGCCTAACAGCGACA 560
||||| | || | |||||||| ||||||||||| |||||||| || | | |||
Sbjct 555 GCAGAGGAAGAGGACGAGGACGTGGACAAGGACAAGGAAGCAGAGAGCCCAATAACAACA 614
Query 561 ACAACAACAACAATTGGCTCAAGAATCCTCAGATGTTCGAATTT---AACAACACTCCTA 617
||||| |||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 615 ACAACGACAACAATTGGCTCAAGAATCCTCAGATGTTCGAATTTAACAACAACACTCCTA 674
Query 618 GTTCTGGAGGTGGAGGACCTGCTGAGTTTGTCAGTCCAAGTTTTACACCTCATGTGCTCA 677
|||||| || |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 675 CTTCTGGTGGAGGAGGACCTGCTGAAATTGTCAGTCCAAGTTTTACACCTCATGTGCTCA 734
Query 678 CAGTAAACGCCGGTGAGGATGTGACAATGAAGATAATGACATTCTCTCAACAAGGCTCGC 737
||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 735 CAGTAAATGCCGGTGAGGATGTGACAATGAAGATAATGACATTCTCTCAACAAGGCTCGC 794
Query 738 GTGCTATTTGCATTCTTTCAGCTAACGGTCCCATTTCCAATGTTACAATTCGTCAATCTA 797
|||||||||| ||||||||||| ||||||||||| |||||||||||| ||||||||||||
Sbjct 795 GTGCTATTTGTATTCTTTCAGCGAACGGTCCCATATCCAATGTTACACTTCGTCAATCTA 854
Query 798 TGACATCTGGTGGTACTCTCACTTATGAGGGTCATTTTGAGATTCTGTCTTTGACGGGTT 857
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 855 TGACATCTGGTGGTACTCTCACTTATGAGGGTCATTTTGAGATTCTTTCTTTGACGGGTT 914
Query 858 CGTTTATACCAAGCGAGAGTGGAGGAACCCGAAGCAGAGCTGGCGGGATGAGTGTGTCTC 917
||||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||||
Sbjct 915 CGTTTATACCAAGCGAGAGTGGAGGAACCCGAAGCAGAGCTGGTGGGATGAGTGTCTCTC 974
Query 918 TTGCAGGACCAGATGGTCGTGTCTTTGGTGGTGGACTTGCCGGTCTCTTTATAGCCGCTG 977
||||||||| |||||||||||||||||||||||||||||| ||||||||||| |||||||
Sbjct 975 TTGCAGGACAAGATGGTCGTGTCTTTGGTGGTGGACTTGCTGGTCTCTTTATTGCCGCTG 1034
Query 978 GTCCTGTTCAGGTAATGGTGGGGAGTTTTATAGCGGGTCAGGAGGAATCgcagcaacagc 1037
||||||||||||||||||| |||||||||||||||||||||||||||| | | ||||
Sbjct 1035 GTCCTGTTCAGGTAATGGTAGGGAGTTTTATAGCGGGTCAGGAGGAAT--C-G---CAGC 1088
Query 1038 agcagcagcagcagATAAAGAAGCAAAGAAGGGAAAGACTCGGGATCCCGACAACAACAC 1097
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1089 AGCAGCAGCAGCAGATAAAGAAGCAAAGAAGGGAAAGACTCGGGATCCCGACAACAACAC 1148
Query 1098 AAGCTTCTAATATCTCATTCGGTGGATCAGCAGAAGATCCAAAGGCTAGATACGGTCTCA 1157
||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||||
Sbjct 1149 AAGCTTCTAATATCTCATTCGGTGGCTCAGCGGAAGATCCTAAGGCTAGATACGGGCTCA 1208
Query 1158 ACAAGCCTGTTGTTATTCAGCCACCACCTGTGTCCGCACCACCTGTGTCCTTTTCGCATG 1217
|||||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 1209 ACAAGCCTGTTGTTATTCAGCCACCACCGGTGTCTGCACCACCTGTGTCCTTTTCGCATG 1268
Query 1218 AGCCAAGTACTAACACAGTCCATGGTTACTATGCAAATAACACAGCTAACCATATCAAGG 1277
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 1269 AACCAAGTACTAACACCGTCCATGGTTACTATGCAAATAACACAGCTAACCATATCAAGG 1328
Query 1278 ATCTCTTCTCACCCCTCCCagaagaagatgagg-aagaagatgaagaggatttagaaggt 1336
|||||||||| ||||||| | ||||||| ||| |||||||||| || ||||||||||||
Sbjct 1329 ATCTCTTCTCTTCCCTCCCTGGAGAAGAT-AGGGAAGAAGATGAGGATGATTTAGAAGGT 1387
Query 1337 gaagatgatgaagaaTTTGGAGGCCATAGCGAATCTGACACCGAGGTTCCAAGCTGATGA 1396
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1388 GAAGATGATGAAGAATTCGGAGGCCATAGCGAATCTGACACCGAGGTTCCAAGCTGATGA 1447
Query 1397 TCGATGGAAAGAATCCGACAT-TGATCAGTCAT-AATCTTGAGTTGTTGCGACATTTTTA 1454
||||||||||||||||||||| | || || || |||||||||||||| || |
Sbjct 1448 TCGATGGAAAGAATCCGACATAT-ATGTGTTATGAATCTTGAGTTGTT------TT---A 1497
Query 1455 TTTCGGTGTCTTCAGAtttttttAGAGTGTAATG 1488
||||||||||||||||||||||||||| ||||||
Sbjct 1498 TTTCGGTGTCTTCAGATTTTTTTAGAGCGTAATG 1531
Score = 200 bits (108), Expect = 3e-50
Identities = 138/151 (91%), Gaps = 7/151 (5%)
Strand=Plus/Plus
Query 1489 TAAACAGAGATATTTCACTAAAAGTTAGGGTTTACTAGAGGATGTAATCTTTAGGGTTCT 1548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1570 TAAACAGAGATATTTCACTAAAAGTTAGGGTTTACTAGAGGATGTAATCTTTAGGGTTCT 1629
Query 1549 TTGACTTGTGTCTTTCTTTTTATCCCCA-AGTGGTTGTTGTAGAACTTCAA---AA-CTT 1603
|||||||||||||||||||| |||| || | |||||||||||| ||| | || |||
Sbjct 1630 TTGACTTGTGTCTTTCTTTTAATCCTCAGA-TGGTTGTTGTAGG-CTTGTAGCCAATCTT 1687
Query 1604 AGTGTGTGTTCAAACTCTCTCCTTAAATCAA 1634
|||||||||||||||||||||||| ||||||
Sbjct 1688 AGTGTGTGTTCAAACTCTCTCCTTCAATCAA 1718
Score = 178 bits (96), Expect = 2e-43
Identities = 111/117 (95%), Gaps = 6/117 (5%)
Strand=Plus/Plus
Query 1 CTGAATCTTACGTCCTCTGGA----TCTT-TCT-TCTCTCTCTCTTGTCTATACTTTAAG 54
||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||||
Sbjct 1 CTGAATCTTACGTCCTCTGGATCTTTCTTCTCTCTCTCTCTCTCTTGTCTATACTTTAAG 60
Query 55 TGTCTGTCTGAAGAAGCTTGAATCTGTCGTGATCATCAAGATTCAAGTTCTGTCTTT 111
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 TGTCTGTCTGAAGAAGCTTGAATCTGTCGTGATCATCAAGATTCAAGTTCTGTCTTT 117
> AT4G25320.1 | Symbols: | AT hook motif DNA-binding family protein
| chr4:12954077-12956543 FORWARD LENGTH=1827
Length=1827
Score = 448 bits (242), Expect = 1e-124
Identities = 358/414 (86%), Gaps = 7/414 (2%)
Strand=Plus/Plus
Query 622 TGG-AGGTGGAGGACCTGCTGAGTTTGTCAGT-CCAAGTTTTACACCTCATGTGCTCA-C 678
||| ||||| |||| ||||||| ||||| || |||| |||||||||||||| || | |
Sbjct 869 TGGCAGGTGTAGGAACTGCTGATTTTGTTGGTGCCAA-CTTTACACCTCATGTACTGATC 927
Query 679 AGTAAACGCCGGTGAGGATGTGACAATGAAGATAATGACATTCTCTCAACAAGGCTCGCG 738
|| |||||||| ||||||||||| ||||||||||||||||||||||||||||| || ||
Sbjct 928 -GTCAACGCCGGAGAGGATGTGACGATGAAGATAATGACATTCTCTCAACAAGGATCTCG 986
Query 739 TGCTATTTGCATTCTTTCAGCTAACGGTCCCATTTCCAATGTTACAATTCGTCAATCTAT 798
|||||| ||||| ||||||||||| |||||||| ||||||||||| |||||||||||||
Sbjct 987 TGCTATCTGCATCCTTTCAGCTAATGGTCCCATCTCCAATGTTACGCTTCGTCAATCTAT 1046
Query 799 GACATCTGGTGGTACTCTCACTTATGAGGGTCATTTTGAGATTCTGTCTTTGACGGGTTC 858
|||||| ||||||||||| ||||||||||||| |||||||||||| ||||||||||||||
Sbjct 1047 GACATCCGGTGGTACTCTAACTTATGAGGGTCGTTTTGAGATTCTCTCTTTGACGGGTTC 1106
Query 859 GTTTATACCAAGCGAGAGTGGAGGAACCCGAAGCAGAGCTGGCGGGATGAGTGTGT-CTC 917
|||||| | || || ||||||||| ||||| |||||||| || |||||||| | | |
Sbjct 1107 GTTTATGCAAAATGACTCTGGAGGAACTCGAAGTAGAGCTGGTGGTATGAGTGTTTGC-C 1165
Query 918 TTGCAGGACCAGATGGTCGTGTCTTTGGTGGTGGACTTGCCGGTCTCTTTATAGCCGCTG 977
||||||||||||||||||||||||||||||| ||||| || ||||||||| | || ||||
Sbjct 1166 TTGCAGGACCAGATGGTCGTGTCTTTGGTGGAGGACTCGCTGGTCTCTTTCTTGCTGCTG 1225
Query 978 GTCCTGTTCAGGTAATGGTGGGGAGTTTTATAGCGGGTCAGGAGGAATCgcagc 1031
||||||| ||||||||||| |||| ||||||||| ||||| ||| | || ||||
Sbjct 1226 GTCCTGTCCAGGTAATGGTAGGGACTTTTATAGCTGGTCAAGAGCAGTCACAGC 1279
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 80722476360
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5