BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495229 Length=1634 Score E Sequences producing significant alignments: (Bits) Value AT5G51590.1 | Symbols: | AT hook motif DNA-binding family prot... 1917 0.0 AT4G25320.1 | Symbols: | AT hook motif DNA-binding family prot... 448 1e-124 > AT5G51590.1 | Symbols: | AT hook motif DNA-binding family protein | chr5:20956567-20959113 REVERSE LENGTH=1740 Length=1740 Score = 1917 bits (1038), Expect = 0.0 Identities = 1299/1414 (92%), Gaps = 61/1414 (4%) Strand=Plus/Plus Query 103 TCTGTCTTTAATTGTCGGAATCAGAATC-TTTCAGATGGAGGAGAGAGAAGGAACTAACA 161 ||| || ||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 151 TCT-TCCTTAATTGTCGGAATCAGAATCTTTTCAGATGGAGGAGAGAGAAGGAACTAACA 209 Query 162 T------CA---GAACCAGTTTTGGTCTGAAACAACATGAAGCTCCTCTTCTTCCTCCTC 212 | || |||||||||||||||||||||||||||| || | | ||||||||||| Sbjct 210 TCAACAACATCCCAACCAGTTTTGGTCTGAAACAACATGAAACT-C-C-TCTTCCTCCTC 266 Query 213 CTGGTTACCACATGGAACCACCACGGTCTGAAAACCCTAATCTTTTTCCGGTGGGTCAAT 272 |||||| || ||||||||||||||||||||||||||||||||||||||||||| Sbjct 267 CTGGTT---AC------CCACCACGGTCTGAAAACCCTAATCTTTTTCCGGTGGGTCAAT 317 Query 273 CCAGCACTTCCTCCGTCGCCGCCGCCGCCGTGAAAGCTTCTGAGAATGTTGCTCCTCCTT 332 |||||||||||| | |||||||||||| |||||| |||||||||||||||||||||||| Sbjct 318 CCAGCACTTCCT-C--CGCCGCCGCCGCGGTGAAACCTTCTGAGAATGTTGCTCCTCCTT 374 Query 333 TTAGCTTAACAATGCCGGTGGAGAATTCTTCTTCTGACTTGAAGAAGAAGAGAGGGAGAC 392 ||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||| Sbjct 375 TTAGCTTAACAATGCCGGTGGAGAATTCTTCTTCTGAGTTGAAGAAGAAGAGAGGGAGAC 434 Query 393 CGAGAAAGTATAACCCTGACGGCTCACTCGCTGTGACTCTCTCTCCAATGCCTATCTCCT 452 | |||||||||||||||||||||||||||||||||||||||||||| ||||||||||| | Sbjct 435 CAAGAAAGTATAACCCTGACGGCTCACTCGCTGTGACTCTCTCTCCTATGCCTATCTCAT 494 Query 453 CCTCCGTTCCGTTGACGTCTGAGCTTGGTTCTCGGAAACGAGGAAGAGGGCGAGGAAGAG 512 ||||||||||||||||||| ||| ||||||||||||||||||||||||| |||||||||| Sbjct 495 CCTCCGTTCCGTTGACGTCGGAGTTTGGTTCTCGGAAACGAGGAAGAGGTCGAGGAAGAG 554 Query 513 GCAGA-G--GA--A-GAGGACGT------GGACAAGGAAGTAGAGAGCCTAACAGCGACA 560 ||||| | || | |||||||| ||||||||||| |||||||| || | | ||| Sbjct 555 GCAGAGGAAGAGGACGAGGACGTGGACAAGGACAAGGAAGCAGAGAGCCCAATAACAACA 614 Query 561 ACAACAACAACAATTGGCTCAAGAATCCTCAGATGTTCGAATTT---AACAACACTCCTA 617 ||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 615 ACAACGACAACAATTGGCTCAAGAATCCTCAGATGTTCGAATTTAACAACAACACTCCTA 674 Query 618 GTTCTGGAGGTGGAGGACCTGCTGAGTTTGTCAGTCCAAGTTTTACACCTCATGTGCTCA 677 |||||| || |||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 675 CTTCTGGTGGAGGAGGACCTGCTGAAATTGTCAGTCCAAGTTTTACACCTCATGTGCTCA 734 Query 678 CAGTAAACGCCGGTGAGGATGTGACAATGAAGATAATGACATTCTCTCAACAAGGCTCGC 737 ||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 735 CAGTAAATGCCGGTGAGGATGTGACAATGAAGATAATGACATTCTCTCAACAAGGCTCGC 794 Query 738 GTGCTATTTGCATTCTTTCAGCTAACGGTCCCATTTCCAATGTTACAATTCGTCAATCTA 797 |||||||||| ||||||||||| ||||||||||| |||||||||||| |||||||||||| Sbjct 795 GTGCTATTTGTATTCTTTCAGCGAACGGTCCCATATCCAATGTTACACTTCGTCAATCTA 854 Query 798 TGACATCTGGTGGTACTCTCACTTATGAGGGTCATTTTGAGATTCTGTCTTTGACGGGTT 857 |||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||| Sbjct 855 TGACATCTGGTGGTACTCTCACTTATGAGGGTCATTTTGAGATTCTTTCTTTGACGGGTT 914 Query 858 CGTTTATACCAAGCGAGAGTGGAGGAACCCGAAGCAGAGCTGGCGGGATGAGTGTGTCTC 917 ||||||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| Sbjct 915 CGTTTATACCAAGCGAGAGTGGAGGAACCCGAAGCAGAGCTGGTGGGATGAGTGTCTCTC 974 Query 918 TTGCAGGACCAGATGGTCGTGTCTTTGGTGGTGGACTTGCCGGTCTCTTTATAGCCGCTG 977 ||||||||| |||||||||||||||||||||||||||||| ||||||||||| ||||||| Sbjct 975 TTGCAGGACAAGATGGTCGTGTCTTTGGTGGTGGACTTGCTGGTCTCTTTATTGCCGCTG 1034 Query 978 GTCCTGTTCAGGTAATGGTGGGGAGTTTTATAGCGGGTCAGGAGGAATCgcagcaacagc 1037 ||||||||||||||||||| |||||||||||||||||||||||||||| | | |||| Sbjct 1035 GTCCTGTTCAGGTAATGGTAGGGAGTTTTATAGCGGGTCAGGAGGAAT--C-G---CAGC 1088 Query 1038 agcagcagcagcagATAAAGAAGCAAAGAAGGGAAAGACTCGGGATCCCGACAACAACAC 1097 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1089 AGCAGCAGCAGCAGATAAAGAAGCAAAGAAGGGAAAGACTCGGGATCCCGACAACAACAC 1148 Query 1098 AAGCTTCTAATATCTCATTCGGTGGATCAGCAGAAGATCCAAAGGCTAGATACGGTCTCA 1157 ||||||||||||||||||||||||| ||||| |||||||| |||||||||||||| |||| Sbjct 1149 AAGCTTCTAATATCTCATTCGGTGGCTCAGCGGAAGATCCTAAGGCTAGATACGGGCTCA 1208 Query 1158 ACAAGCCTGTTGTTATTCAGCCACCACCTGTGTCCGCACCACCTGTGTCCTTTTCGCATG 1217 |||||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||| Sbjct 1209 ACAAGCCTGTTGTTATTCAGCCACCACCGGTGTCTGCACCACCTGTGTCCTTTTCGCATG 1268 Query 1218 AGCCAAGTACTAACACAGTCCATGGTTACTATGCAAATAACACAGCTAACCATATCAAGG 1277 | |||||||||||||| ||||||||||||||||||||||||||||||||||||||||||| Sbjct 1269 AACCAAGTACTAACACCGTCCATGGTTACTATGCAAATAACACAGCTAACCATATCAAGG 1328 Query 1278 ATCTCTTCTCACCCCTCCCagaagaagatgagg-aagaagatgaagaggatttagaaggt 1336 |||||||||| ||||||| | ||||||| ||| |||||||||| || |||||||||||| Sbjct 1329 ATCTCTTCTCTTCCCTCCCTGGAGAAGAT-AGGGAAGAAGATGAGGATGATTTAGAAGGT 1387 Query 1337 gaagatgatgaagaaTTTGGAGGCCATAGCGAATCTGACACCGAGGTTCCAAGCTGATGA 1396 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 1388 GAAGATGATGAAGAATTCGGAGGCCATAGCGAATCTGACACCGAGGTTCCAAGCTGATGA 1447 Query 1397 TCGATGGAAAGAATCCGACAT-TGATCAGTCAT-AATCTTGAGTTGTTGCGACATTTTTA 1454 ||||||||||||||||||||| | || || || |||||||||||||| || | Sbjct 1448 TCGATGGAAAGAATCCGACATAT-ATGTGTTATGAATCTTGAGTTGTT------TT---A 1497 Query 1455 TTTCGGTGTCTTCAGAtttttttAGAGTGTAATG 1488 ||||||||||||||||||||||||||| |||||| Sbjct 1498 TTTCGGTGTCTTCAGATTTTTTTAGAGCGTAATG 1531 Score = 200 bits (108), Expect = 3e-50 Identities = 138/151 (91%), Gaps = 7/151 (5%) Strand=Plus/Plus Query 1489 TAAACAGAGATATTTCACTAAAAGTTAGGGTTTACTAGAGGATGTAATCTTTAGGGTTCT 1548 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 1570 TAAACAGAGATATTTCACTAAAAGTTAGGGTTTACTAGAGGATGTAATCTTTAGGGTTCT 1629 Query 1549 TTGACTTGTGTCTTTCTTTTTATCCCCA-AGTGGTTGTTGTAGAACTTCAA---AA-CTT 1603 |||||||||||||||||||| |||| || | |||||||||||| ||| | || ||| Sbjct 1630 TTGACTTGTGTCTTTCTTTTAATCCTCAGA-TGGTTGTTGTAGG-CTTGTAGCCAATCTT 1687 Query 1604 AGTGTGTGTTCAAACTCTCTCCTTAAATCAA 1634 |||||||||||||||||||||||| |||||| Sbjct 1688 AGTGTGTGTTCAAACTCTCTCCTTCAATCAA 1718 Score = 178 bits (96), Expect = 2e-43 Identities = 111/117 (95%), Gaps = 6/117 (5%) Strand=Plus/Plus Query 1 CTGAATCTTACGTCCTCTGGA----TCTT-TCT-TCTCTCTCTCTTGTCTATACTTTAAG 54 ||||||||||||||||||||| |||| ||| |||||||||||||||||||||||||| Sbjct 1 CTGAATCTTACGTCCTCTGGATCTTTCTTCTCTCTCTCTCTCTCTTGTCTATACTTTAAG 60 Query 55 TGTCTGTCTGAAGAAGCTTGAATCTGTCGTGATCATCAAGATTCAAGTTCTGTCTTT 111 ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 61 TGTCTGTCTGAAGAAGCTTGAATCTGTCGTGATCATCAAGATTCAAGTTCTGTCTTT 117 > AT4G25320.1 | Symbols: | AT hook motif DNA-binding family protein | chr4:12954077-12956543 FORWARD LENGTH=1827 Length=1827 Score = 448 bits (242), Expect = 1e-124 Identities = 358/414 (86%), Gaps = 7/414 (2%) Strand=Plus/Plus Query 622 TGG-AGGTGGAGGACCTGCTGAGTTTGTCAGT-CCAAGTTTTACACCTCATGTGCTCA-C 678 ||| ||||| |||| ||||||| ||||| || |||| |||||||||||||| || | | Sbjct 869 TGGCAGGTGTAGGAACTGCTGATTTTGTTGGTGCCAA-CTTTACACCTCATGTACTGATC 927 Query 679 AGTAAACGCCGGTGAGGATGTGACAATGAAGATAATGACATTCTCTCAACAAGGCTCGCG 738 || |||||||| ||||||||||| ||||||||||||||||||||||||||||| || || Sbjct 928 -GTCAACGCCGGAGAGGATGTGACGATGAAGATAATGACATTCTCTCAACAAGGATCTCG 986 Query 739 TGCTATTTGCATTCTTTCAGCTAACGGTCCCATTTCCAATGTTACAATTCGTCAATCTAT 798 |||||| ||||| ||||||||||| |||||||| ||||||||||| ||||||||||||| Sbjct 987 TGCTATCTGCATCCTTTCAGCTAATGGTCCCATCTCCAATGTTACGCTTCGTCAATCTAT 1046 Query 799 GACATCTGGTGGTACTCTCACTTATGAGGGTCATTTTGAGATTCTGTCTTTGACGGGTTC 858 |||||| ||||||||||| ||||||||||||| |||||||||||| |||||||||||||| Sbjct 1047 GACATCCGGTGGTACTCTAACTTATGAGGGTCGTTTTGAGATTCTCTCTTTGACGGGTTC 1106 Query 859 GTTTATACCAAGCGAGAGTGGAGGAACCCGAAGCAGAGCTGGCGGGATGAGTGTGT-CTC 917 |||||| | || || ||||||||| ||||| |||||||| || |||||||| | | | Sbjct 1107 GTTTATGCAAAATGACTCTGGAGGAACTCGAAGTAGAGCTGGTGGTATGAGTGTTTGC-C 1165 Query 918 TTGCAGGACCAGATGGTCGTGTCTTTGGTGGTGGACTTGCCGGTCTCTTTATAGCCGCTG 977 ||||||||||||||||||||||||||||||| ||||| || ||||||||| | || |||| Sbjct 1166 TTGCAGGACCAGATGGTCGTGTCTTTGGTGGAGGACTCGCTGGTCTCTTTCTTGCTGCTG 1225 Query 978 GTCCTGTTCAGGTAATGGTGGGGAGTTTTATAGCGGGTCAGGAGGAATCgcagc 1031 ||||||| ||||||||||| |||| ||||||||| ||||| ||| | || |||| Sbjct 1226 GTCCTGTCCAGGTAATGGTAGGGACTTTTATAGCTGGTCAAGAGCAGTCACAGC 1279 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 80722476360 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5