BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495230
Length=2506
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51600.1 | Symbols: PLE, ATMAP65-3, MAP65-3 | Microtubule as... 3648 0.0
> AT5G51600.1 | Symbols: PLE, ATMAP65-3, MAP65-3 | Microtubule
associated protein (MAP65/ASE1) family protein | chr5:20960911-20964484
REVERSE LENGTH=2550
Length=2550
Score = 3648 bits (1975), Expect = 0.0
Identities = 2251/2382 (95%), Gaps = 28/2382 (1%)
Strand=Plus/Plus
Query 145 TCTCGCGAAGTTTCAGTGATAGA-T---TC-AA--TC---ATCATCATCAGTTCTGGAAA 194
||||||||||||||||||| ||| | || || || ||||||||||||||||||||
Sbjct 176 TCTCGCGAAGTTTCAGTGACAGATTCAATCAAACTTCAAAATCATCATCAGTTCTGGAAA 235
Query 195 ATCTCCGAGAAATCTCCCGTTTCAGG-TTAAAGCATTTCGAAATGGCTAGTATTCAAAAA 253
|| | ||||||||||||||||||||| || ||||||||||||||||| ||| ||||||||
Sbjct 236 ATTTACGAGAAATCTCCCGTTTCAGGCTT-AAGCATTTCGAAATGGCAAGTGTTCAAAAA 294
Query 254 GATCCGATTCTTCAAGTAGAGACAACTTGTGGATCTCTTCTATACGAACTCCAGATTATT 313
||||||||||||||||||||||||||||||||||||||| ||| ||||||||||||||||
Sbjct 295 GATCCGATTCTTCAAGTAGAGACAACTTGTGGATCTCTTTTATTCGAACTCCAGATTATT 354
Query 314 TGGGATGAAGTTGGAGAAACTGAAACTGATAGAGAT-AAGATGTTGCTTGAGCTTGAACG 372
|||||||||||||||||||| ||||||||||||||| || ||||||||||||||||||||
Sbjct 355 TGGGATGAAGTTGGAGAAACAGAAACTGATAGAGATCAA-ATGTTGCTTGAGCTTGAACG 413
Query 373 TGAATGTTTGGAAGTGTATAGAAGAAAAGTTGATCAAGCTAATCGATGTAGAGCTCA-AT 431
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||| |
Sbjct 414 TGAATGTTTGGAAGTTTATAGAAGAAAAGTTGATCAAGCTAATCGATGTAGAGCTCAGCT 473
Query 432 TACGACAAGCGATAGCTGATGCTGAAGCAGAATTAGCTGCCATTTGTTCTGCTATGGGAG 491
|| ||||||| |||||||||||||||||| |||||||||| |||||||||||||||||||
Sbjct 474 TA-GACAAGCAATAGCTGATGCTGAAGCACAATTAGCTGCAATTTGTTCTGCTATGGGAG 532
Query 492 AGCGTCCTGTGCATATTAGACAGACTGATCAAAGCGTCGGGAGCTTGAAGCAAGAGCTTG 551
||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||||
Sbjct 533 AGCGTCCTGTGCATATTAGACAGTCTGATCAAAGCGTTGGGAGCTTGAAGCAAGAGCTTG 592
Query 552 GGAGGATTCTTCCTGAACTGGAAGAGATGCAAAAGAGGAAAATTGAAAGAAGAAACCAGT 611
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 593 GGAGGATTCTTCCTGAACTGGAAGAGATGCAAAAGAGGAAAGTTGAAAGAAGAAACCAGT 652
Query 612 TCGTTGTTGTCCTGGAGGAAATAGATAGTATTACTAATGATATTAGAGGTCAAGGAGAAC 671
|| |||||||| ||||| ||||||||||||||||||||||||||| ||||||||||||||
Sbjct 653 TCATTGTTGTCATGGAGCAAATAGATAGTATTACTAATGATATTAAAGGTCAAGGAGAAC 712
Query 672 TCGTTCATTCCAAACCACTTATCGATGAGACTGACTTGTCTATGAGAAAGCTTGAAGAGT 731
| ||||||||| |||| ||||||||||||||| |||||||||||||||||||||||||||
Sbjct 713 TTGTTCATTCCGAACCTCTTATCGATGAGACTAACTTGTCTATGAGAAAGCTTGAAGAGT 772
Query 732 TACACTGCCAGCTGCAAGCACTTCAGAAGGAGAAGATTGATCGTGTGGAGACGATTAGGA 791
|||||||||||||||||| ||||||||||||||||||||||||||||||||||||| |||
Sbjct 773 TACACTGCCAGCTGCAAGTACTTCAGAAGGAGAAGATTGATCGTGTGGAGACGATTCGGA 832
Query 792 AGCACCTGTGTACTTTGTATTCCCATTGTTCAGTACTTGGAATGGATTTTAATGAGGTTG 851
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 833 AGCACCTGTGTACTCTGTATTCCCATTGTTCAGTACTTGGAATGGATTTTAATGAGGTTG 892
Query 852 TTGGCCAAGTGAATCCCACATTGAGTGATCCAGAAGGACCAAGAAGCTTGAGTGATCATA 911
|||||||||||||||||||||||||||||||||||||||||||||| || ||||||||||
Sbjct 893 TTGGCCAAGTGAATCCCACATTGAGTGATCCAGAAGGACCAAGAAGTTTAAGTGATCATA 952
Query 912 CGATAGAGAAATTGGGGGCTGCAGTTCAGAAGCTGAGGGAGGTCAAGATACAGAGAATGC 971
| || ||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 953 CAATTGAGAAATTGGGGGCTGCAGTTCAGAAGCTGATGGAGGTCAAGATACAGAGAATGC 1012
Query 972 A-ACGGCTTCAAGATCTAGCAACAACCATGTTGGAGCTCTGGAATTTGATGGATACACCC 1030
| | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1013 AGA-GGCTTCAAGATCTAGCAACAACCATGTTGGAGCTCTGGAATTTGATGGATACACCC 1071
Query 1031 ATAGAAGAGCAGCAAGAGTATCAGCATATTACCTGCAATATAGCTGCATCAGAACATGAA 1090
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1072 ATAGAAGAGCAGCAAGAGTATCAGCATATTACCTGCAATATAGCTGCATCAGAACATGAA 1131
Query 1091 ATAACTGAAGCCAATAGTCTCTCTGAAGACTTCATTAAATACGTTGAAGCAGAAGTTGTC 1150
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1132 ATAACTGAAGCCAATAGTCTCTCTGAAGACTTCATTAAATACGTTGAGGCAGAAGTTGTC 1191
Query 1151 CGATTGGATGAGGTAAAAGCAAGCAAAATGAAAGAACTTGTTTTGAAGAAAAGGTCAGAA 1210
|||||||| |||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1192 CGATTGGACGAGGTAAAAGCAAGCAAAATGAAAGAACTTGTGTTGAAGAAAAGGTCAGAA 1251
Query 1211 CTAGAGGACATATGTAGGAAAACCCACTTGTTGCCAGTGTCAGACAGTGCTATAGATCAA 1270
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1252 CTAGAGGAGATATGTAGGAAAACCCACTTGTTGCCAGTGTCAGACAGTGCTATAGATCAG 1311
Query 1271 ACTATAGCAGCGATAGAATCTGGTATTGTGGATGCTACAATGGTCCTGGAGCATCTTGAG 1330
||||| | |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1312 ACTATCGTGGCGATAGAATCTGGTATTGTGGATGCTACAATGGTCCTGGAGCATCTTGAG 1371
Query 1331 CAACATATATCTAAGATCAAAGAGGAAGCTTTAAGCCGAAAAGATATACTTGAAAGGGTT 1390
||||||||||||||||||||||||||||| ||||||||||||| |||||||||||||||
Sbjct 1372 CAACATATATCTAAGATCAAAGAGGAAGCACTAAGCCGAAAAGAGATACTTGAAAGGGTT 1431
Query 1391 GAGAAATGGTTATCTGCCTGCGATGAAGAAAGTTGGCTTGAAGAATACAACAGGGATGAT 1450
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 GAGAAATGGTTATCTGCCTGCGATGAAGAAAGTTGGCTTGAAGAATACAACAGGGATGAT 1491
Query 1451 AACCGATACAATGCTGGGAGAGGAGCTCATCTTACTCTCAAGCGTGCTGAGAAAGCTCGT 1510
|||||||||||||||||| | ||||||||||||||||||||||| ||||| |||||||||
Sbjct 1492 AACCGATACAATGCTGGGCGTGGAGCTCATCTTACTCTCAAGCGCGCTGAAAAAGCTCGT 1551
Query 1511 AATCTTGTTAACAAGCTTCCAGGAATGGTTGAAGCACTGGCCTCGAAGACTATAGTTTGG 1570
|||||||||| |||||| ||||| |||||||||||||||||||||||||| |||||||||
Sbjct 1552 AATCTTGTTACCAAGCTCCCAGGTATGGTTGAAGCACTGGCCTCGAAGACAATAGTTTGG 1611
Query 1571 GAACAAGAAAAGGGGATTGAATTTCTCTATGATGGTATCCGTCTCCTTTCTATGCTTGAG 1630
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1612 GAACAAGAAAACGGGATTGAATTTCTCTATGATGGTATCCGTCTCCTTTCTATGCTTGAG 1671
Query 1631 GAGTACAACTTGCTCAGGCAGGAAAGAGAAGAGGAACACCGTCGCCAACGGGATCAGAAG 1690
||||| ||| | |||||||||||||||||||| ||||||||||| ||||||||||||||
Sbjct 1672 GAGTATAACATACTCAGGCAGGAAAGAGAAGAAGAACACCGTCGGCAACGGGATCAGAAA 1731
Query 1691 AAGCTTCAAGGACAGCTCATAGCAGAACAAGAGGCGCTATACGGGTCCAAGCCGAGCCCA 1750
||||||||||||||||||||||||||||||||||| || ||||||||||| || ||||||
Sbjct 1732 AAGCTTCAAGGACAGCTCATAGCAGAACAAGAGGCACTTTACGGGTCCAAACCCAGCCCA 1791
Query 1751 TCTAAACCCCTTGGTGGTAAAAAGGCTCCAAGAATGTCAACCGGTGGTGCAACCAACCGA 1810
|||||||||||||||||||||||||||||||||||||| |||||||||||| | ||| ||
Sbjct 1792 TCTAAACCCCTTGGTGGTAAAAAGGCTCCAAGAATGTCGACCGGTGGTGCATCTAACAGA 1851
Query 1811 AGACTCTCCTTAGGAGCAGCAATGCATCAGACTCCTAAGCCTAACAAGAAAGCAGATCAC 1870
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1852 AGACTTTCCTTAGGAGCAGCAATGCATCAGACTCCTAAGCCTAACAAGAAAGCAGATCAC 1911
Query 1871 CGACAGAATGATGGAGCTTTATCTAATGGAAGAAGAGGGCTTGATATTGCAGGACTTCCC 1930
||||| ||||||||||||||||| |||||||||||||||||||| ||||||||||| |||
Sbjct 1912 CGACATAATGATGGAGCTTTATCAAATGGAAGAAGAGGGCTTGACATTGCAGGACTACCC 1971
Query 1931 TCGAGGAAACAATCAATGAATCCTTCTGAAATGTTGCAATCTCCATTAGTTCGCAAACCA 1990
|| |||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1972 TCAAGGAAACAATCAATGAATCCTTCTGAAATGTTGCAATCCCCATTAGTTCGCAAACCG 2031
Query 1991 TTCTCGCCCATTTCAACCACGGTGATTGCATCAAAGGCCAACATAGcaacaacaaca-ca 2049
|| || ||||| || ||||||||| |||||||||||||||||||||||||||||||| ||
Sbjct 2032 TTTTCCCCCATATCGACCACGGTGGTTGCATCAAAGGCCAACATAGCAACAACAACAACA 2091
Query 2050 acaacaGCTTCCGAAAATCAACGCAGTGAATGAGATCTCATCATTTGCAACTCCTGTCAA 2109
||||| |||||||||| ||||||||||||||||||||||||||||||||||||| ||||
Sbjct 2092 -CAACAACTTCCGAAAAACAACGCAGTGAATGAGATCTCATCATTTGCAACTCCTATCAA 2150
Query 2110 GAACATCAACAGTATTAGGAACTTGGAAGAAGAGAAAATGATGACTATGATGATGCAAAC 2169
||||| ||||| | | |||||||||||||||||||| |||||||||||||||||||||||
Sbjct 2151 GAACAACAACATTCTCAGGAACTTGGAAGAAGAGAAGATGATGACTATGATGATGCAAAC 2210
Query 2170 ACCTAAGAATGTTGCTGCAATGATTCCAATCCCATCGACACCAGCAACAGTCTCTGTCCC 2229
||| || |||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 2211 ACCGAAAAATGTTGCTGCAATGATTCCAATCCCGTCGACACCAGCAACAGTCTCTGTCCC 2270
Query 2230 AATGCACACTGCACCAACACCATTCACCGACAATGCAAGATTGATGTCTGAAAAGCCTGA 2289
||||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 2271 AATGCACACCGCACCAACACCATTCACCAACAATGCAAGATTGATGTCTGAAAAGCCTGA 2330
Query 2290 AGTTGTTGAGTACTCGTTTGAGGAACGAAGGCTCGCCTTCATGCTACAGGCTGAATGTGG 2349
|||||||||||||||||||||||||||||| |||||||||||||||||| |||||||| |
Sbjct 2331 AGTTGTTGAGTACTCGTTTGAGGAACGAAGACTCGCCTTCATGCTACAGTCTGAATGTCG 2390
Query 2350 TTTGGTTTGATCATTAATCCTTTGG-TCTCACTCTTAAGTT-TTTTCATTTGTAAAACTC 2407
|||||||||||||| ||||| |||| | ||| |||||||| |||| |||||||||||||
Sbjct 2391 TTTGGTTTGATCATCAATCCGTTGGAT-TCAA-CTTAAGTTCTTTT-ATTTGTAAAACTC 2447
Query 2408 AAATTGAATGTGGTTTGGTTTGCAAAAGGTCAATTATATGATTGGCtttttttttCTTTA 2467
|||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||
Sbjct 2448 AAATTGAATGTGGTTTGGTTTGTAAAAGGTCAATTATATGATTGGCTTTTTTTTTTTTTT 2507
Query 2468 ---AGTAAGCATTTTTACACGTATGGTTTCTTCTGAGACTGA 2506
||||| |||||||||||||||||||| ||||||||||||
Sbjct 2508 TTGAGTAATCATTTTTACACGTATGGTTTATTCTGAGACTGA 2549
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 124363851697
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5