BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495231
Length=1789
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51640.1 | Symbols: YLS7, TBL17 | Plant protein of unknown f... 2375 0.0
AT4G25360.1 | Symbols: TBL18 | TRICHOME BIREFRINGENCE-LIKE 18 |... 905 0.0
> AT5G51640.1 | Symbols: YLS7, TBL17 | Plant protein of unknown
function (DUF828) | chr5:20975180-20977625 REVERSE LENGTH=1830
Length=1830
Score = 2375 bits (1286), Expect = 0.0
Identities = 1673/1847 (91%), Gaps = 77/1847 (4%)
Strand=Plus/Plus
Query 1 AAACTCCCAGATCTTGTCGATTTTAATAAATTCCTCACCAAAGCAAAAG------C--T- 51
|||||||||||||||||||| ||| || ||||||| |||||||||||| | |
Sbjct 1 AAACTCCCAGATCTTGTCGA-TTT-ATTTATTCCTCTCCAAAGCAAAAGCTTCTTCGATC 58
Query 52 -T-C---T-TCGTTTTCAATTCTAAATGTTGTGTGCAGAAAAATCATGACTTTGGCTTCT 105
| | | ||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 59 GTCCTTGTCTCGTTTTCAATTCTAAATGTTTTGTGCAGAAAAATCATGACTTTGGCTTCT 118
Query 106 CCACGAGTTTCAAATTC---GAAGACTGTGTTGTTGTTTCCTCGGAAAGTTTCTTCAATT 162
||||||||||||||||| || ||||||||||||||||||||| |||||||||||||||
Sbjct 119 CCACGAGTTTCAAATTCAAAGACGACTGTGTTGTTGTTTCCTCGAAAAGTTTCTTCAATT 178
Query 163 GCATTTGCTATTGGTGGATTAACTTCTTTCGTCATCTTCGCTTCTCTGCTTCTTTTCACT 222
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 GCATTTGCTATTGGTGGATTAACTTCTTTCGTCATCTTCGCTTCTCTGCTTCTTTTCACG 238
Query 223 TATCCCATTGGTTCTTCAGTTACTGACTATCTCTACAGAACAGAGACCACTCAAAATGTC 282
|||||||||||||| || |||||||||||| ||||||||||||||||||||||||| |||
Sbjct 239 TATCCCATTGGTTCCTCTGTTACTGACTATTTCTACAGAACAGAGACCACTCAAAACGTC 298
Query 283 CAATTTTACCACAGTAT---TGATCC---T-G------A--------TTCTAGCTCACAC 321
|| ||| |||| ||||| |||||| | | | |||||||||| |
Sbjct 299 CAGTTTCACCATAGTATCCATGATCCTGATCGTAACCCATCTCCTGTTTCTAGCTCAGAG 358
Query 322 TCACCACCATTATTGACACAAGACAGTGATCATAAAGTGCTTCCCAA-GGATTCTTC-GG 379
||||||||| ||||||||||||| |||||| |||||||||||||||| ||| || || |
Sbjct 359 TCACCACCAGTATTGACACAAGATAGTGATGATAAAGTGCTTCCCAAGGGA-TC-TCATG 416
Query 380 ATTCGAACGATGTTAGATTAGGCGAAG----AAA--C---GAAGTCTTCAAATGTTTCCA 430
||||||| |||||||||||||| |||| ||| | ||||||||||||||||||||
Sbjct 417 ATTCGAATGATGTTAGATTAGGTGAAGAAACAAACTCAGGGAAGTCTTCAAATGTTTCCA 476
Query 431 TGGATGAAGAAGAAGCTACACAAGATTC-TGTAGAAACAGAATGTGATCTATATCATGGT 489
| ||| ||||||||||||||||| || ||||||||||||||||||| |||||||||||
Sbjct 477 T---TGATGAAGAAGCTACACAAGA-TCATGTAGAAACAGAATGTGATTTATATCATGGT 532
Query 490 AACTGGTTTTTTGATCCAATGGGACCGGTGTACACAAACAACTCTTGTCCTCTTTTGACA 549
|||||||||| |||||| ||||||||| |||| |||||||||||||||||||||||||||
Sbjct 533 AACTGGTTTTATGATCCGATGGGACCGTTGTATACAAACAACTCTTGTCCTCTTTTGACA 592
Query 550 CAGATGCAGAACTGTCAGGGTAATGGAAGACCTGACAAGGGGTATGAAAACTGGAGATGG 609
|||||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 593 CAGATGCAAAACTGTCAGGGCAATGGAAGACCTGACAAGGGGTATGAAAACTGGAGATGG 652
Query 610 AAACCGTCTCAGTGTGATCTTCCACGGTTTGATGCCAAGAAATTTCTCGAGCTAATGAGA 669
||||||||||||||||||||||| || |||||||| ||||||||||| ||||||||||||
Sbjct 653 AAACCGTCTCAGTGTGATCTTCCGCGTTTTGATGCTAAGAAATTTCTTGAGCTAATGAGA 712
Query 670 GGCAAGACACTAGCTTTTATAGGTGATTCAGTGGCTCGTAATCAGATGGAGTCCATGATG 729
||||||||||||||||||||||| |||||||| |||||||||||||||||||||||||||
Sbjct 713 GGCAAGACACTAGCTTTTATAGGCGATTCAGTAGCTCGTAATCAGATGGAGTCCATGATG 772
Query 730 TGCCTTCTTTGGCAGGTAGAAACTCCGGTTAACCGTGGGAATC-GAAAGATGCAGAGATG 788
|| |||||||||||||||||||||||||||||||||||||| | | ||||||||||||||
Sbjct 773 TGTCTTCTTTGGCAGGTAGAAACTCCGGTTAACCGTGGGAA-CAGGAAGATGCAGAGATG 831
Query 789 GTATTTCAGGTCATCATCAGTAATGATAGCTCGGATGTGGTCATCTTGGCTCGTTCATCA 848
|||||||||||||||||| || ||||||||||||||||||||||||||||| || |||||
Sbjct 832 GTATTTCAGGTCATCATCGGTGATGATAGCTCGGATGTGGTCATCTTGGCTGGTCCATCA 891
Query 849 GTTCAACGAACCGTTTGGTTTTGCTACTGATGGTGTAACCAAACTCAAGCTCGACCAACC 908
|||||| |||||||||||||||||||| ||||||||||| ||||||||||| ||||||||
Sbjct 892 GTTCAATGAACCGTTTGGTTTTGCTACAGATGGTGTAACTAAACTCAAGCTTGACCAACC 951
Query 909 TGACGAGCGCATAATTGAAGCTCTTCCGAAATTCGATGTGGTTGTACTTTCATCGGGTCA 968
|| |||||||||||||||||||||||||| ||||||||||||||||||||||| |||||
Sbjct 952 CGATGAGCGCATAATTGAAGCTCTTCCGAATTTCGATGTGGTTGTACTTTCATCAGGTCA 1011
Query 969 CTGGTTTGCAAAACAGTCTGTCTACATTTTAAATGACGAGATTGTTGGAGGCCAGTTATG 1028
|||||||||||||||||||||||| |||||||||||| ||||||| ||||||||||||||
Sbjct 1012 CTGGTTTGCAAAACAGTCTGTCTATATTTTAAATGACCAGATTGTGGGAGGCCAGTTATG 1071
Query 1029 GTGGCCGGACAAATCAAAACCAGCAAAGATTAACAACGTCAAAGCATTTGGGATCTCTGT 1088
|||||| |||||||||||||| | |||||||||||||||| |||||||||||||||||||
Sbjct 1072 GTGGCCAGACAAATCAAAACCCGAAAAGATTAACAACGTCGAAGCATTTGGGATCTCTGT 1131
Query 1089 AGAAACAATCCTAAAGGCAATGGCTAAACACCCAAACTACACCGGTCTGACCATCTTACG 1148
|||||||||| ||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 1132 AGAAACAATCATAAAGGCAATGGCTAAACACCCAAACTACACGGGTCTGACCATCTTACG 1191
Query 1149 TACTTGGTCGCCTGATCACTATGAGGGCGGTGCATGGAACACTGGTGGATCGTGTACTGG 1208
|||||||||||||||||| ||||| |||||||| ||||||||||||||||| || || ||
Sbjct 1192 TACTTGGTCGCCTGATCATTATGAAGGCGGTGCGTGGAACACTGGTGGATCATGCACAGG 1251
Query 1209 CAAAGTAGAGCCGCTTCCTCCCGGGAAGTTAGTTACAAACGGATTCACAGAGATAATGCA 1268
|||||||||||||||||||| ||||| |||||||||||||| |||||||||||||||||
Sbjct 1252 TAAAGTAGAGCCGCTTCCTCCTGGGAATTTAGTTACAAACGGGTTCACAGAGATAATGCA 1311
Query 1269 CGAGAAGCAAACAACAGGGTTTCACCGAGCTGTGGCGGATGATAAACTCGGCAATAGATC 1328
|||||||||| |||||||||||||||| ||||| ||||||||||| ||||| ||||||||
Sbjct 1312 CGAGAAGCAAGCAACAGGGTTTCACCGTGCTGTCGCGGATGATAAGCTCGGGAATAGATC 1371
Query 1329 GAAGAAGCTGAAGCTAATGGATATCACTGAGGCTTTCGGGTATCGCCACGACGGTCATCC 1388
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1372 GAAGAAGCTGAAGCTAATGGATATCACTGAGGCTTTCGGGTATCGCCACGACGGTCATCC 1431
Query 1389 TGGCCCGTACAGGAGTCCTGACCCGAAAAAGATCACAAAACGTGGACCAGACGGTCAGCC 1448
||| || |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1432 TGGTCCATACAGGAGTCCTGACCCGAAAAAGATCACAAAACGTGGACCAGACGGTCAGCC 1491
Query 1449 TCCTCCACAAGACTGCTTGCATTGGTGCATGCCGGGGCCGGTAGACACATGGAACGAGAT 1508
||||||||||||||| ||||||||||||||||| ||||| || |||||||||||||||||
Sbjct 1492 TCCTCCACAAGACTGTTTGCATTGGTGCATGCCAGGGCCAGTGGACACATGGAACGAGAT 1551
Query 1509 GGTTCTGGAGATTATAAGAAGAGATTTGGAAGGCAGACGAAGTACACCATCATCTTGATC 1568
||||||||||||||| || |||||||| |||||||||| |||| ||||||||||||||||
Sbjct 1552 GGTTCTGGAGATTATTAGGAGAGATTTTGAAGGCAGACAAAGTTCACCATCATCTTGATC 1611
Query 1569 TAGGAGCAAAGAGATATATTTATTTATATATACGTACAAGATAATTTATTCATACCACGG 1628
|||||||||| |||||||||||| ||||| |||||||||| |||||||||||||||||
Sbjct 1612 TAGGAGCAAA-AGATATATTTAT--ATATA--CGTACAAGATCATTTATTCATACCACGG 1666
Query 1629 AGTAGTTGATCTAAGGATTTCTAATTTATATTCAT-ACACAATACACTCACTTGTAGGTC 1687
| |||||||| ||||||||||||| ||||||||| ||||||||||| ||||||||||||
Sbjct 1667 ATTAGTTGATTTAAGGATTTCTAAAGTATATTCATTACACAATACACACACTTGTAGGTC 1726
Query 1688 TCTGTTTTTCTTACATACAA---A-CTTAAAGCAAACGTAAGAGTTTTATTTATTAGATC 1743
||| ||||| |||| ||||| | |||||||||||| |||||||| |||| | |||
Sbjct 1727 TCTCTTTTT-TTACGTACAATGTAACTTAAAGCAAACATAAGAGTTCTATT-A---GATT 1781
Query 1744 AGTTACTCTTTTAGATGAATGAATCTT-ATAATCATAATTTTTGTTT 1789
||||||||||||||||||| ||||||| |||||||||||||||||||
Sbjct 1782 AGTTACTCTTTTAGATGAAAGAATCTTTATAATCATAATTTTTGTTT 1828
> AT4G25360.1 | Symbols: TBL18 | TRICHOME BIREFRINGENCE-LIKE 18
| chr4:12969577-12972644 FORWARD LENGTH=2215
Length=2215
Score = 905 bits (490), Expect = 0.0
Identities = 894/1087 (82%), Gaps = 35/1087 (3%)
Strand=Plus/Plus
Query 462 AGAAACAGAATGTGATCTATATCATGGTAACTGGTTTTTTGATCCAATGGGACCGGTGTA 521
|||| |||| |||||| | ||||| |||| ||||||| |||||| |||||| | ||
Sbjct 886 AGAACCAGAGTGTGATTTGTATCAAGGTAGTTGGTTTTATGATCCTGGGGGACCTCTCTA 945
Query 522 CACAAACAACTCTTGTCCTCTTTTGACACAGATGCAGAACTGTCAGGGTAATGGAAGACC 581
||| ||||||||||| ||| | |||| ||||||||||| || ||||| |||||||||||
Sbjct 946 CACGAACAACTCTTGCCCTGTCCTGACGCAGATGCAGAATTGCCAGGGAAATGGAAGACC 1005
Query 582 TGACAAGGGGTATGAAAACTGGAGATGGAAACCGTCTCAGTGTGATCTTCCACGGTTTGA 641
||||||||| ||||| ||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 1006 TGACAAGGGATATGAGAACTGGAGATGGAAACCGTCTCAGTGTGAGCTTCCTCGGTTTGA 1065
Query 642 TGCCAAGAAA-TTTCTCGAGCTAATGAGAGGCAAGACACTAGCTTTTATAGGTGATTCAG 700
||||| |||| ||||| || || |||| |||||||||||| || |||||||| |||||||
Sbjct 1066 TGCCA-GAAAATTTCTTGAACTTATGAAAGGCAAGACACTGGCCTTTATAGGAGATTCAG 1124
Query 701 TGGCTCGTAATCAGATGGAGTCCATGATGTGCCTTCTTTGGCAGGTAGAAACTCCGGTTA 760
| |||||||||||||||||||||||| ||||||||||||||||||| ||||| || || |
Sbjct 1125 TAGCTCGTAATCAGATGGAGTCCATGTTGTGCCTTCTTTGGCAGGTTGAAACACCAGTCA 1184
Query 761 ACCGTGGGAATCGAAAGATGCAGAGATGGTATTTCAGGTCA-TCATCAGTAATGATAGCT 819
| ||||||| ||||||||||||||||||||||| | | || |||||||||||||| ||
Sbjct 1185 ATCGTGGGAGCCGAAAGATGCAGAGATGGTATTTTAAG-CAATCATCAGTAATGATTGCC 1243
Query 820 CGGATGTGGTCATCTTGGCTCGTTCATCAGTTCAACGAACCGTTTGGTTTTGCTACTGAT 879
|| || |||||||||||||| |||||||||||||||||| || | || |||| ||||
Sbjct 1244 CGTATTTGGTCATCTTGGCTTGTTCATCAGTTCAACGAAAAATTCGATTATGCTCCTGAA 1303
Query 880 GGTGTAACCAAACTCAAGCTCGACCAACCTGACGAGCGCATAATTGAAGCTCTTCCGAAA 939
||||| || ||||| ||||| || | ||||| ||||||||||| |||||| | ||||||
Sbjct 1304 GGTGTCACAAAACTAAAGCTGGATCTTCCTGATGAGCGCATAATGGAAGCTATCCCGAAA 1363
Query 940 TTCGATGTGGTTGTACTTTCATC-GGGTCACTGGTTTGCAAAACAGTCTGTCTACATTTT 998
||||| |||||||| || ||||| ||| |||||||||||||| |||||||||||||| ||
Sbjct 1364 TTCGACGTGGTTGTCCTCTCATCAGGG-CACTGGTTTGCAAAGCAGTCTGTCTACATATT 1422
Query 999 -AAATGACGAGATTGTTGGAGGCCAGTTATGGTGGCCGGACAAATCAAAACC-A-GCAAA 1055
||| || ||||| || |||||||| ||||||||||| |||||||||||||| | | |||
Sbjct 1423 GAAA-GAAGAGATCGTGGGAGGCCAATTATGGTGGCCAGACAAATCAAAACCCATG-AAA 1480
Query 1056 GATTAACAACGTCAAAGCATTTGGGATCTCTGTAGAAACAATCCTAAAGGCAATGGCTAA 1115
| | || ||||| | |||||||| || || || ||||||||||| ||| | |||||||
Sbjct 1481 G-TCAATAACGTGGATGCATTTGGAATATCAGTTGAAACAATCCTTAAGTCCATGGCTAC 1539
Query 1116 ACACCCAAACTACACCGGTCTGACCATCT-T-ACGTAC-TTGGTCGCCTGATCACTATGA 1172
|||||| ||||||| |||| ||||||| | | | | || || || |||||||| || ||
Sbjct 1540 ACACCCGAACTACAGCGGTTTGACCAT-TGTGA-GAACATTC-TCACCTGATCATTACGA 1596
Query 1173 GGGCGGTGCATGGAACACTGGTGGATCGTGTACTGGCAAAGTAGAGCCGCTTCCTCCC-G 1231
|| ||||| |||||||| |||||||| || || || |||| ||| || | |||| || |
Sbjct 1597 AGGTGGTGCTTGGAACACAGGTGGATCATGCACGGGGAAAGAAGAACC-CATCCTTCCAG 1655
Query 1232 GGAAGTTAGTTACAAACGGATTCACAGAGATAATGCACGAGAAGCAAACAACAGGGTTTC 1291
||||| |||| | |||||||||||||||||||||||| ||||||||| | ||||| | |
Sbjct 1656 GGAAGCTAGTGAAAAACGGATTCACAGAGATAATGCATGAGAAGCAAGCGACAGGATATA 1715
Query 1292 ACCGAGCTGTGGCGGATGATAAA-CTCGGC-AATA-GAT-CGAAGAAGCTGAAGCTAATG 1347
||| ||| || || || | || | ||| ||| || | || || || ||||| |||
Sbjct 1716 ACCAAGCCGT--CG-AT-A-AAGTCGCGGAGAATTTGAAGCTAA-AA-CTAAAGCTGATG 1768
Query 1348 GATATCACTGAGGC-TTTCGGGTATCGCCACGACGGTCATCCTGGCCCGTACAGGAGTCC 1406
|||||||| ||||| ||| || |||||||| || ||||||||||| || | ||| |||||
Sbjct 1769 GATATCACAGAGGCATTT-GGATATCGCCATGATGGTCATCCTGGTCCATTCAGAAGTCC 1827
Query 1407 TGACCCGAAAAAGATCACAAAACGTGGACCAGACGGTCAGCCTCCTCCACAAGACTGCTT 1466
|||||| || |||||||| ||||| ||||||||||| | |||||| || || ||||||||
Sbjct 1828 TGACCCTAACAAGATCACTAAACGGGGACCAGACGGACGGCCTCCACCTCAGGACTGCTT 1887
Query 1467 GCATTGGTGCATGCCGGGGCCGGTAGACACATGGAACGAGATGGTTCT-GGAGATTATAA 1525
||| ||||||||||| || || || || ||||||||||| ||||| || |||| | ||||
Sbjct 1888 GCACTGGTGCATGCCAGGACCAGTCGATACATGGAACGAAATGGT-CTTGGAGCTCATAA 1946
Query 1526 GAAGAGA 1532
| |||||
Sbjct 1947 GGAGAGA 1953
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 88503560835
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5