BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495238
Length=2109
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51710.1 | Symbols: KEA5, ATKEA5 | K+ efflux antiporter 5 | ... 3522 0.0
> AT5G51710.1 | Symbols: KEA5, ATKEA5 | K+ efflux antiporter 5
| chr5:21004278-21008718 REVERSE LENGTH=2133
Length=2133
Score = 3522 bits (1907), Expect = 0.0
Identities = 2050/2116 (97%), Gaps = 22/2116 (1%)
Strand=Plus/Plus
Query 1 ATTGATTCAATTTCAAAATTTTGGATC---TAAAACCAAAACTCTCATCTTaaaaaaaaa 57
||||||||||||||||||||||||||| ||||||||||||||||| |||||||||||
Sbjct 1 ATTGATTCAATTTCAAAATTTTGGATCTAATAAAACCAAAACTCTCA--TTAAAAAAAAA 58
Query 58 aa-CACAAAATC-AATCTGAATTCTGAAACATTTTTGAATTCGCGACGATTCCCAAATTC 115
|| | |||||| ||||||| ||||||||| |||||| ||||||||||||||||||||||
Sbjct 59 AATAAAAAAATCAAATCTGATTTCTGAAACGTTTTTG-ATTCGCGACGATTCCCAAATTC 117
Query 116 CTGGGAAAATA--TCTGAATCCATGGCGACGAGATTCGCAGTGATTGGATTTACGTTCCT 173
||||||||||| |||| ||| || | | |||||||||||||||||||||| ||||||||
Sbjct 118 CTGGGAAAATATCTCTG-ATCGAT-G-G-CGAGATTCGCAGTGATTGGATTAACGTTCCT 173
Query 174 CCTTTTACTTGGTACATCCTTATCAGCGAGATCTGATGAAGAAACGCGCGAGCGATTTTA 233
||||||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 174 CCTTTTACTTGGTACGTCCTTATCAGCGAGATCTGATGAAGAAACACGCGAGCGATTTTA 233
Query 234 CGGCAACGTCGTGAACTCGACGGCACCGGGAAACGGTGAAGGAAGTATCGCTAAAATGTT 293
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 234 CGGCAACGTCGTGAACTCGACGGCTCCGGGAAACGGTGAAGGAAGTATCGCTAAAATGTT 293
Query 294 CGATCGAGTTCTGGAGAAAGAGTTTTCCGATAACGATTCTCCCGAAGGATCTGATGGAGC 353
||||||||||||||||||||| |||||||| |||||||| || |||||||||||||||||
Sbjct 294 CGATCGAGTTCTGGAGAAAGAATTTTCCGAAAACGATTCGCCTGAAGGATCTGATGGAGC 353
Query 354 TAGCTTTAACAGCAGTGTTGCTGATCAACAAGCTGAGATAGAGACTGTTGCTAAAGTAAC 413
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 354 TAGCTTTAACAGCAGTGTTGCTGATCAACAAGCTGAAATAGAGACTGTTGCTAAAGTAAC 413
Query 414 TCATGAGAAGGGCAAAAGAAATGATACACAAGAAAACAATGGTACGAGACCGTTTCAACT 473
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 414 TCATGAGAAGGGCAAAAGAAATGATACACAAGAAAATAATGGTACGAGACCGTTTCAACT 473
Query 474 TCAAGATGTGTTTTCCCTGGAAAATGAAGATTCTGATGATATGACTCTTATTGACAAGAA 533
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 474 TCAAGATGTGTTTTCCCTGGAGAATGAAGATTCTGATGATATGACTCTTATTGACAAGAA 533
Query 534 GAATAATGTTTTTGTCATGTCAAACAAGAAATCTAAGTATCCGATCCTTCAAGTAGATTT 593
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 534 GAATAATGTTTTTGTCATGTCAAACAAGAAATCTAAGTATCCGATACTTCAAGTAGATTT 593
Query 594 GAGATTAATATCAGATTTGGTGGTCATTATTGTTTTTGCTGCGATTGGTGGCATCGTCTT 653
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 594 GAGATTAATATCAGATTTGGTGGTCATTATTGTTTTTGCTGCAATTGGTGGCATCGTCTT 653
Query 654 CTCTTGTCTTGGACAACCGGTCATTGTTGGATATCTTCTTGCGGGGTCGATCATTGGGCC 713
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 654 CTCTTGTCTTGGACAACCGGTCATTGTTGGATATCTTCTTGCGGGGTCAATCATTGGGCC 713
Query 714 AGGAGGATTGAAATTCATTAGTGAAATGGTTCAGGTTGAAACCGTAGCACAGTTTGGTGT 773
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 714 AGGAGGATTGAAATTCATTAGTGAAATGGTTCAGGTTGAAACCGTAGCACAGTTTGGTGT 773
Query 774 TGTTTTTCTTCTGTTTGCTTTGGGCTTGGAATTCTCAATGACGAAGCTGAAAGTCGTTGG 833
|||||| ||||||||||||||||| ||||||||||||||||| |||||||||||||||||
Sbjct 774 TGTTTTCCTTCTGTTTGCTTTGGGTTTGGAATTCTCAATGACTAAGCTGAAAGTCGTTGG 833
Query 834 CCCAGTTGCTGTCCTTGGAGGGCTTCTTCAAATTGTCTTACTCATGTTTTTGTGTGGTGT 893
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 834 CCCAGTTGCTGTCCTTGGAGGGCTTCTTCAAATTGTCTTACTCATGTTTTTGTGTGGTGT 893
Query 894 AACTGCCTTGTTGTGTGGAGCAAGGTTGTCAGAGGGTATTTTTGTTGGTGCCTTTTTATC 953
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 894 AACTGCCTTGTTGTGTGGAGCAAGGTTGTCAGAGGGTATTTTTGTTGGTGCCTTTTTATC 953
Query 954 TATGTCATCAACTGCAGTGGTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCT 1013
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 954 TATGTCATCAACTGCAGTGGTGGTAAAGTTTTTGGTAGAACGGAACAGTACAAGTTCTCT 1013
Query 1014 TCATGGTCAAGTTACGATAGGGATACTTATCTTTCAGGACTGTGTTGTTGGTTTACTATT 1073
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1014 TCATGGTCAAGTTACTATAGGGATACTTATCTTTCAGGACTGTGTTGTTGGTTTACTATT 1073
Query 1074 CGCCTTGCTTCCAGTTTTGGGTGGTAACAGTGGTTTACTACAAGGAATTATATCAATGGG 1133
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1074 CGCCTTGCTTCCAGTTTTGGGTGGTAACAGTGGTTTACTACAAGGAATTATATCAATGGG 1133
Query 1134 AAAGCTGCTACTGATATTGTCCATATATCTCATTGTGGCATCTCTATTAACGTGGTCATT 1193
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1134 AAAGCTGCTACTGATATTGTCCATATATCTCACTGTGGCATCTCTATTAACGTGGTCATT 1193
Query 1194 TGTACCCCGTTTTTTGAAGCTAATGATTCAATTATCATCTCAAACAAATGAACTTTACCA 1253
|||||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1194 TGTACCTCGTTTTCTGAAGCTAATGATTCAATTATCATCTCAAACAAATGAACTTTACCA 1253
Query 1254 GTTAGCTGCTGTGGCATTCTGCTTACTATCTGCATGGTGCAGTGACAAGCTGGGTCTTAG 1313
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1254 GTTAGCTGCTGTGGCATTCTGCTTACTATCTGCATGGTGCAGTGACAAGCTGGGTCTTAG 1313
Query 1314 TCTTGAGTTGGGATCATTTGTGGCTGGCGTTATGTTGTCTACGACTGAATTTGCTCAACA 1373
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1314 TCTTGAGTTGGGATCATTTGTGGCTGGCGTTATGTTGTCTACGACTGAATTTGCTCAACA 1373
Query 1374 TACATTAGAGCAGGTGGAACCAATTCGTAATCTGTTTGCCGCTCTCTTTCTATCTAGTAT 1433
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1374 TACACTAGAGCAGGTGGAACCAATTCGTAATCTGTTTGCCGCTCTCTTTCTATCTAGTAT 1433
Query 1434 CGGGATGCTCATTAATGTGCACTTTCTATGGAACCACGTGGATATCCTTCTGGCGTCGGT 1493
|||||||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1434 CGGGATGCTCATTAATGTTCACTTTCTATGGAACCACGTGGATATCCTTCTAGCGTCGGT 1493
Query 1494 GATTCTAGTGATAGTTATTAAGACAGCAATTGCAGCAGTAGTTGTTAAGGCTTTTAGGTA 1553
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1494 GATTCTAGTGATAGTTATTAAGACAGCAATTGCAGCAGTAGTTGTTAAGGCTTTTAGGTA 1553
Query 1554 CAACATGAGGATATCTTTCCATGTCGGGGTACTGCTTGCTCAGATTGGAGAGTTCGCCTT 1613
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1554 CAACATGAGGATATCTTTCCATGTCGGGGTACTGCTTGCTCAGATTGGAGAGTTCGCCTT 1613
Query 1614 TGTTCTTCTAAGCCGAGCGTCAAACCTACACGTAATCGAGGTGAAAATGTATCTACTCCT 1673
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1614 TGTTCTTCTAAGCCGAGCGTCAAACCTACACGTAATCGAGGGGAAAATGTATCTACTCCT 1673
Query 1674 TTTGGGCACAACAGCTCTAAGTCTTGTAACGACTCCGTTGCTATTCAAGTTAATACCGAG 1733
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1674 TTTGGGCACAACTGCTCTAAGTCTCGTAACGACTCCGTTGCTATTCAAGTTAATACCGAG 1733
Query 1734 TGCAATGAACCTCGGTGTCCTCCTTCGATGGTTCCCTTCTGAGAACAGTGCTCCGAACGA 1793
||||||||||||||||||||| ||||||||||||||||||||||||||| ||||||||||
Sbjct 1734 TGCAATGAACCTCGGTGTCCTGCTTCGATGGTTCCCTTCTGAGAACAGTTCTCCGAACGA 1793
Query 1794 GAGTTTGCAGGAGAAAGCATCATTGATAGAAGTACATAACAGAACCAAGTGATCTCTCAT 1853
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1794 GAGTTTGCAGGAGAAAGCATCATTGATAGAAGTACATAACAGAACCAAGTGATCTCTCTT 1853
Query 1854 TTGTGCATTGACTGAAGATTTAAGAAGGaaaaaaaCAGATTTTGATCCGATAAACTCAAC 1913
|||| |||||||||||||||||||||| |||||| ||||||||||||||||| |||||||
Sbjct 1854 TTGTACATTGACTGAAGATTTAAGAAG-AAAAAA-CAGATTTTGATCCGATATACTCAAC 1911
Query 1914 TAGGTGGCaaaaaaaaaaaaaCATTTAAAACTGACCAAATCAGATCCAAGACTTGCTTTT 1973
|||| |||| |||||| ||||| |||||||||||||||||||||||||||||||||
Sbjct 1912 TAGGAGGCAGAAAAAA-----CATTTGAAACTGACCAAATCAGATCCAAGACTTGCTTTT 1966
Query 1974 TGTATTTTCTTAACTCTTTATTTTTTGTAATATGGTATATATTTAGTATTCACTACCTTC 2033
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1967 TGTATTTTCTTAACTCTTTATTTTTTGTAATATCGTATATATTTAGTATTCACTACCTTC 2026
Query 2034 TTGTGTAGTTCAAGTGACTTATAGCTTGTTTTACTTGGTGTAAAAGTTGTAATGATATTA 2093
|||||||||||||| | ||||||||||||||||||||||||||| ||||||| |||||||
Sbjct 2027 TTGTGTAGTTCAAGCG-CTTATAGCTTGTTTTACTTGGTGTAAACGTTGTAACGATATTA 2085
Query 2094 GCCTTATATGCTGTTG 2109
||||||||||||||||
Sbjct 2086 GCCTTATATGCTGTTG 2101
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 104567735235
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5