BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495239

Length=477
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G51720.1 | Symbols:  | 2 iron, 2 sulfur cluster binding | ch...   747    0.0  


> AT5G51720.1 | Symbols:  | 2 iron, 2 sulfur cluster binding | 
chr5:21009592-21010345 FORWARD LENGTH=498
Length=498

 Score =  747 bits (404),  Expect = 0.0
 Identities = 455/479 (95%), Gaps = 6/479 (1%)
 Strand=Plus/Plus

Query  1    CTTCATAAACAAATCACTGCCACATAGAGGGTGAGTAAGAGAGAGTCGTTCCAATGGCTA  60
            ||||||||||||||||||||||||||||| ||||||||||||||||  ||||||||||||
Sbjct  1    CTTCATAAACAAATCACTGCCACATAGAGAGTGAGTAAGAGAGAGTTATTCCAATGGCTA  60

Query  61   TCATCGCAACCACGTTCGGCACGGGGCTAAGTTACGCCGGTCAGCTTCCATTCAAACGAG  120
            ||||||||| ||||||||||||||||||||||||||||||  ||||||||||||| | ||
Sbjct  61   TCATCGCAAGCACGTTCGGCACGGGGCTAAGTTACGCCGGGGAGCTTCCATTCAAGCCAG  120

Query  121  TCACCGCGGGAGAGGTGGGACAAAAGCAGCAGAGAATGGTGGTGGTGAGAGCAGAAGGCG  180
            |||||| |||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct  121  TCACCGGGGGAGAGGTGGGACGAAAGCAGCAGAGAATGGTGGTGGTGAGAGCAGAAGGCG  180

Query  181  GTGGAGGAGGTATCAATCCGGAGATCAGAAAGAACGAAGAGAAGGTTGTTGACTCCGTCG  240
            ||   ||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct  181  GT---GGAGGTATCAATCCGGAGATCAGAAAGAACGAAGATAAGGTTGTTGACTCCGTCG  237

Query  241  TCGTCACCGAGCTTTCCAAGAACATAACTCCCTATTGCAGGTGTTGGAGGTCGGGGACGT  300
            | ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  238  TTGTCACCGAGCTTTCCAAGAACATAACTCCCTATTGCAGGTGTTGGAGGTCGGGGACGT  297

Query  301  TTCCATTGTGTGATGGGAGTCATGTGAAGCACAACAAAGCTAATGGAGATAACGTTGGCC  360
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  298  TTCCATTGTGTGATGGGAGTCATGTGAAGCACAACAAAGCTAATGGAGATAACGTTGGCC  357

Query  361  CTCTTCTTCTCAAGAAACAGTAGTTCtttttgttttttttctcgtt-tttCT-TGGTGAT  418
            |||||||||||||||||||||||||||||||||||||||||| ||| ||| | || ||||
Sbjct  358  CTCTTCTTCTCAAGAAACAGTAGTTCTTTTTGTTTTTTTTCTTGTTGTTTGTGTG-TGAT  416

Query  419  GTATTGATACTCGTCTAATTGAATAAAAAGATCATTATCTAGTGAAATTAAGCTTATAA  477
            |||||||||||||||||||||||||| ||||  ||||||||||||||| ||||||||||
Sbjct  417  GTATTGATACTCGTCTAATTGAATAATAAGAAAATTATCTAGTGAAATGAAGCTTATAA  475



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 22705834444


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5