BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495240
Length=1488
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51740.1 | Symbols: | Peptidase family M48 family protein |... 2063 0.0
> AT5G51740.1 | Symbols: | Peptidase family M48 family protein
| chr5:21017027-21019221 FORWARD LENGTH=1646
Length=1646
Score = 2063 bits (1117), Expect = 0.0
Identities = 1389/1516 (92%), Gaps = 35/1516 (2%)
Strand=Plus/Plus
Query 1 ATTTCTCCTTCAAGCTCCGTTCCCAGCAATGTCATGGTACCGAAGAACAAAACTCGTATT 60
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 56 ATTTCTCCTTCAAGCTCCGTTCCCAGCAATGTCATGGTACAGAAGAACAAAACTCGTATT 115
Query 61 CGATTCCCTGCGACGTAACATAAACCCGAAGATTCTACCTCGGTCTCATCTTCCTTCGAG 120
||||||||||||||| |||||||||||||||||||||||||| |||||| || |||||||
Sbjct 116 CGATTCCCTGCGACGCAACATAAACCCGAAGATTCTACCTCGATCTCATGTTACTTCGAG 175
Query 121 AAT---CAATCCAATTGGG---TCT--T--CT--G---GGTTTTCCTCAATTTCTTCGCG 165
||| ||||||||||||| ||| | || | ||| || ||||| ||||||||
Sbjct 176 AATCAACAATCCAATTGGGTCTTCTAATCCCTCAGCTAAGTTCTCTTCAATCTCTTCGCG 235
Query 166 TCAAGTAGGGTTACGATCATGGACATCTCTCGGCCAAAACACCAACAGAATCGCGTATAA 225
||||||| ||| ||||||||||||||||||||| |||||| |||||||||||||||||
Sbjct 236 AGAAGTAGGATTAAGATCATGGACATCTCTCGGCCGAAACACGAACAGAATCGCGTATAA 295
Query 226 TCCGTTTCTGAGTGTACCCAAGAGAAATTACTACGTTGATCGATACCAAGTTCGTCACTT 285
||||||||||||| |||||||||| ||||||||||||||||||||||||||||||| ||
Sbjct 296 TCCGTTTCTGAGTCAACCCAAGAGATATTACTACGTTGATCGATACCAAGTTCGTCATTT 355
Query 286 CAAGCCACGAGGACCAGGAAGATGGTTTCAAAACCCTAGAACAGTGTTTACGGTGGTGAT 345
||||||||||||||||||| | |||||||||||||||||||| ||||||||||||||| |
Sbjct 356 CAAGCCACGAGGACCAGGACGGTGGTTTCAAAACCCTAGAACTGTGTTTACGGTGGTGCT 415
Query 346 TGTTGGTTCTGTTGCTGTGATCACTTT-ATATGTTGGGAATTTAGAAACGGTTCCGTACA 404
|||||||| |||| | |||||||||| || |||||||||| ||||||| |||||||||
Sbjct 416 CGTTGGTTCCGTTGGTCTGATCACTTTGAT-TGTTGGGAATACAGAAACGATTCCGTACA 474
Query 405 CAAAGAGAACACATTTCATTCTCTTATCAAAACCTATGGAGAAACTTCTTGGGGAAACTC 464
|||||||||||||||||||||||||||| |||||||||||||| |||||||| |||||||
Sbjct 475 CAAAGAGAACACATTTCATTCTCTTATCGAAACCTATGGAGAAGCTTCTTGGTGAAACTC 534
Query 465 AATTTGAGCAGATTAAGAAAACTTACAAAGGGAAAATTCTTCCTGCGATTCATCCTGAGA 524
|||||||||||||||||||||||||| ||||||||||||||||||||| |||||||||||
Sbjct 535 AATTTGAGCAGATTAAGAAAACTTACCAAGGGAAAATTCTTCCTGCGACTCATCCTGAGA 594
Query 525 GTATTAGGGTTAGATTGATAGCTAAAGAGGTTATTGATGCGTTGCAGAGAGGTTTGAGTA 584
|||| |||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 595 GTATCAGGGTTAGATTGATAGCTAAAGAGGTTATTGATGCGTTACAGAGAGGTTTGAGTA 654
Query 585 ATGAGCGTGTGTGGAGTGATTTAGGGTATGCTTCTACAGAGAGTAGTTTAGGAGGT-G-- 641
|||||||||| ||||||||||| |||||||||||||| ||||||||||| |||||| |
Sbjct 655 ATGAGCGTGTATGGAGTGATTTGGGGTATGCTTCTACTGAGAGTAGTTTGGGAGGTGGTA 714
Query 642 GTGATAAGGGAGTTAAGGAGATTGAAATGGCTATGAGTGGCGAAGATACGATGACTGATA 701
||||||| ||||||||||| || ||||||||||||||||| |||||||| ||||||||||
Sbjct 715 GTGATAAAGGAGTTAAGGAAATGGAAATGGCTATGAGTGGTGAAGATACTATGACTGATA 774
Query 702 TGAAATGGTCTAAAGCAGATCAGGTTCTTGATGATGAATGGATTCAACAA-AGTAGGAAG 760
||||||||||||||| ||||||||||||||||||| ||||||||||| || |||||||||
Sbjct 775 TGAAATGGTCTAAAGAAGATCAGGTTCTTGATGATCAATGGATTCAA-AAGAGTAGGAAG 833
Query 761 AAAGATTCAAAGGCGCATGCAGCGAGTAGTCATCTTGAAGGGATTAGTTGGGAGGTTCTT 820
|||||||||||||| |||||||||| ||||||||||||||| ||||||||||||||||||
Sbjct 834 AAAGATTCAAAGGCTCATGCAGCGACTAGTCATCTTGAAGGTATTAGTTGGGAGGTTCTT 893
Query 821 GTGGTTAATGAGCCTATTGTTAACGCGTTTTGCTTGCCTGCTGGGAAGATTGTGGTGTTC 880
|||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 894 GTGGTTAATGAGCCTATTGTTAACGCGTTTTGTTTGCCTGCTGGGAAGATTGTGGTGTTC 953
Query 881 ACTGGGCTGCTTGAT-ATTTTCAAGTCGGATGCTGAAGTTGCCACTGTGATCGGGCATGA 939
|||||||||||| || | ||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 954 ACTGGGCTGCTTAATCA-TTTCAAGTCAGATGCTGAAGTTGCCACTGTGATTGGGCATGA 1012
Query 940 GGTTGGTCATGCGGTGGCCCGACATGTAGCTGAGGGAATAACAAAGAACTTATGGTTTGC 999
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 1013 GGTTGGTCATGCGGTGGCCCGACATGTAGCTGAGGGAATAACTAAGAACTTGTGGTTTGC 1072
Query 1000 -AGTCCTTCAACTGGTGCTATATCAGTTTGTCATGCCCGATCTTGTGAACACAATGTCTG 1058
| ||||||||||||| |||||||||||||||||||| |||||||||||||| ||||| |
Sbjct 1073 TA-TCCTTCAACTGGTCCTATATCAGTTTGTCATGCCTGATCTTGTGAACACTATGTCCG 1131
Query 1059 CTCTTTTCTTGAGGCTTCCTTTCTCCAGAAAGATGGAGATAGAAGCGGATTACATTGGTT 1118
| |||||||||||||||||||||||||||||||||||||||||||| || ||||| ||||
Sbjct 1132 CCCTTTTCTTGAGGCTTCCTTTCTCCAGAAAGATGGAGATAGAAGCAGACTACATCGGTT 1191
Query 1119 TGCTATTACTTGCATCAGCGGGATATGACCCACGAGTAGCTCCGAAAGTGTATGAGAAGC 1178
|||| ||||||||||| ||||| |||||||||||||||||||| | ||||||||||||||
Sbjct 1192 TGCTGTTACTTGCATCTGCGGGCTATGACCCACGAGTAGCTCCCACAGTGTATGAGAAGC 1251
Query 1179 TTGGACAA-CTCGGTGGAAACGTACTTGCAGATTATCTATCGACACATCCGTCTGGAAAA 1237
| ||| || ||||||||| ||| ||| | ||||||||||||||| |||||||| ||||||
Sbjct 1252 TGGGA-AAGCTCGGTGGAGACGCACTCGGAGATTATCTATCGACCCATCCGTCGGGAAAA 1310
Query 1238 AAGAGATCACAACTTTTGGCTCAAGCCAATGTGATGGAAGAAGCACTAATGATCTATAGA 1297
||||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1311 AAGAGATCAAAACTTTTGGCTCAAGCCAATGTGATGGAAGAAGCACTAATGATATATAGA 1370
Query 1298 GAAGTCCAATCAGGTCGC-CGTGGCGTTGAAGGCTTTCTTTAGCCTCTTCTCTATTCATC 1356
||||||||| ||||||| | ||||||||||||||||||||||| ||||| | |||||||
Sbjct 1371 GAAGTCCAAGCAGGTCGTAC-TGGCGTTGAAGGCTTTCTTTAGC-TCTTCACCATTCATC 1428
Query 1357 TCGCCTGCTTCTGTACATTATTACTC-TCCACA-C-ATTAATCATGTTGCATGTTATGGT 1413
||| |||||||||||||||||| ||| ||||| | ||||||||||| | |||||||| |
Sbjct 1429 TCGTCTGCTTCTGTACATTATTTCTCCTCCACCTCCATTAATCATGTGGAATGTTATGTT 1488
Query 1414 AG-ATGTTTATATCGTTAAATTGATTGGTGCAATAGAATGATTCCGATTGAGACGCATAG 1472
|| |||||||| ||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1489 AGTATGTTTATGTCGTTAAATTGATTGGTGCAATAGAATGATTCCGATTGAGACGTATAG 1548
Query 1473 TTTGATATTTTGGTCT 1488
|| |||||||||||||
Sbjct 1549 TTGGATATTTTGGTCT 1564
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 73393196790
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5