BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495242
Length=1392
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51760.1 | Symbols: AHG1 | Protein phosphatase 2C family pro... 1984 0.0
> AT5G51760.1 | Symbols: AHG1 | Protein phosphatase 2C family protein
| chr5:21026916-21029188 FORWARD LENGTH=1527
Length=1527
Score = 1984 bits (1074), Expect = 0.0
Identities = 1296/1401 (93%), Gaps = 23/1401 (2%)
Strand=Plus/Plus
Query 1 ATGACTGAAATTTACAGAACAATTTCCACCGGACGTGGAGACGACGTTTCGCCGACTAAA 60
||||||||||| |||||||||||||| ||||||||||||||||||||||| |||||||||
Sbjct 1 ATGACTGAAATCTACAGAACAATTTCAACCGGACGTGGAGACGACGTTTCTCCGACTAAA 60
Query 61 TGCCGTGAGCGCCGTCGTCGGAGAATCGAGATGCGGAGACAAGCGGCGGTTTTCGGCGAT 120
|||||||| || |||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 61 TGCCGTGAACGTCGTCGTCGGAGAATTGAGATGCGGAGACAAGCGGCGGTTTTCGGCGAA 120
Query 121 CCTAGTTCGTCTAGGAATCGTGATCGGACGGACATGGAAGTTTATTCAAGTTTTGCCGTT 180
|||||||||||||||||||||||||||||||||||||||||||| |||||||||| ||||
Sbjct 121 CCTAGTTCGTCTAGGAATCGTGATCGGACGGACATGGAAGTTTACTCAAGTTTTGACGTT 180
Query 181 CCATTGAGGAAACAAGCTCGGAGGTCAGAGATTGGTGGTCTTCCGGCGGATATCGGAGG- 239
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 181 CCATTGAGGAAACAAGCTCGGAGGTCAGAGATCGGTGGTCTTCCGGCGGATATCGGGGGC 240
Query 240 TTTCATAGCACCT---TCGACATCTTCTTGCCAAATATCGGAAGCACCGGTGTGGAAGGG 296
||| | |||||| || ||||||||||||||| ||||||||| ||||||||||||||
Sbjct 241 TTT-TTGGCACCTCCGGCGGCATCTTCTTGCCAAAAATCGGAAGCGCCGGTGTGGAAGGG 299
Query 297 AGAAGAACCGGAGGAGGAGCCGTTGTACGGAATAGTTTCCGTTATGGGAAGATCTCGTAA 356
||||||| ||||||| |||||||||||||| |||||||| ||||||||||||||||||||
Sbjct 300 AGAAGAAACGGAGGATGAGCCGTTGTACGGTATAGTTTCGGTTATGGGAAGATCTCGTAA 359
Query 357 GATGGAGGATACGGTTAATGTTAAACCGAATTTGTGTAAACCGG-AGTTTAACCGGAAAA 415
|||||||||| |||||| |||||||||||||||||| ||||||| || |||||||| |||
Sbjct 360 GATGGAGGATTCGGTTACTGTTAAACCGAATTTGTGCAAACCGGAAG-TTAACCGGCAAA 418
Query 416 GACCTGTTCATTTCTTCG-GTGTATACGATGGCCACGGCGGTTCTCAGGTGTCAACATTA 474
|||| ||||||||||| | | ||||||||||||||||||||||||||||||||||||||
Sbjct 419 GACCGGTTCATTTCTTTGCG-GTATACGATGGCCACGGCGGTTCTCAGGTGTCAACATTG 477
Query 475 TGCAGCACGACGATGCACACGTTAGTTAAGGAGGAGCTAGAGCAAAACCTAGAAGAGGAA 534
||||||||||| ||||||||||| || ||||||||||||||||||||||| ||||||| |
Sbjct 478 TGCAGCACGACTATGCACACGTTTGTCAAGGAGGAGCTAGAGCAAAACCTCGAAGAGG-A 536
Query 535 GG-AGGAGGAAGCGAAAACGACGTCGTGGAGAAGAAATGGCGGGGAGTGATGAAACGGAG 593
|| || ||||||||||||||| |||||||||| |||||||||||| ||||||||||||||
Sbjct 537 GGAAGAAGGAAGCGAAAACGATGTCGTGGAGAGGAAATGGCGGGGCGTGATGAAACGGAG 596
Query 594 TTTCAAGAGGATGGATGAGATGGCCACGAGCACATGCGTGTGTGGGACTAGTGTGCCTTT 653
|||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| ||
Sbjct 597 TTTCAAGAGGATGGATGAGATGGCAACGAGTACATGCGTGTGTGGGACTAGTGTGCCGTT 656
Query 654 GTGTAACTGCGATCCGAGGGAGGCTGCGATTTCGGGTTCAACGGCGGT-TGTGGCGGTTT 712
||||||||| |||||||||||||||||||||||||||||||||||||| | |||||||
Sbjct 657 GTGTAACTGTGATCCGAGGGAGGCTGCGATTTCGGGTTCAACGGCGGTCACT-GCGGTTT 715
Query 713 TGACGCAAGATCATA-TAGTAGTAGCCAACACTGGTGACTCACGTGCCGTGTTGTGTCGA 771
||||||| ||||||| || | |||||||| ||||||||||||||||| ||||||||||||
Sbjct 716 TGACGCACGATCATATTA-TTGTAGCCAATACTGGTGACTCACGTGCGGTGTTGTGTCGA 774
Query 772 AGTGGATTGGCTATTCCTCTTAGTAACGATCACAAGCCGGATAGACCAGATGAGCGTGCG 831
| |||| ||||||||||||| ||||||||||||||||||||||||||||| |||||||||
Sbjct 775 AATGGAATGGCTATTCCTCTGAGTAACGATCACAAGCCGGATAGACCAGACGAGCGTGCG 834
Query 832 AGGATCGAAGCAGCTGGTGGTCGAGTTTTAGTAGTGGATGGAGCTAGAGTTGAAGGAATT 891
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 835 AGGATTGAAGCAGCTGGTGGTCGAGTTTTAGTAGTGGATGGAGCTAGAGTTGAAGGAATT 894
Query 892 CTAGCCACGTCGAGAGCCATAGGGGACAGGTATCTGAAACCAATGGTAGCATGGGAACCA 951
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 895 CTAGCCACGTCCAGAGCCATAGGGGACAGGTATCTAAAACCAATGGTAGCATGGGAACCA 954
Query 952 GAAGTAACATTCATGAGAAGGGAAGCTGGAGATGAATGCTTAGTATTAGCAAGCGATGGG 1011
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 955 GAAGTAACATTCATGAGAAGGGAATCTGGAGATGAATGCTTAGTATTAGCAAGCGATGGG 1014
Query 1012 CTTTGGGATGTGCTCTCGAGTCAGCTAGCTTGTGACATAGCTAGGTTTTGTCTCCGGGAA 1071
||||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 1015 CTTTGGGATGTACTCTCGAGTCAGCTAGCTTGTGACATAGCTAGGTTTTGTCTCCGCGAA 1074
Query 1072 GAAACTCCCTCAAGCCTTGATTTAAACAGAATGGCACTAGAAGACGACAATGACGGAGAA 1131
||||||||||| |||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 1075 GAAACTCCCTCGAGCCTTGATTTAAATAGAATGGCTCAAGAAGACGACAATGACGGAGAA 1134
Query 1132 CAGAACCCTTCAAGGAGTGTATTGGCTGCAACGTTACTTACTCGGCTGGCTTTGGGTAGA 1191
|| || ||||||||||||||||||||||||||||| || || ||| ||||||||||||||
Sbjct 1135 CAAAATCCTTCAAGGAGTGTATTGGCTGCAACGTTGCTAACGCGGTTGGCTTTGGGTAGA 1194
Query 1192 CAAAGCAGTGACAATATAAGTGTGATTGTCATTGATCTCAAGAATAACACTTAATAATAC 1251
||||||||||| |||||||||||| | ||||||||||||||||||| | || | ||| ||
Sbjct 1195 CAAAGCAGTGATAATATAAGTGTGGTCGTCATTGATCTCAAGAATAGCTCTCAGTAAAAC 1254
Query 1252 TGGTTTTGGATCGGTTTTTGGGTGGTTGTGCAATTAAGAGGTTAAACCAAAGAATAAGAT 1311
| |||||||||| ||||| |||||||||||||||||| |||||||||||||||||||||
Sbjct 1255 TAGTTTTGGATCCTTTTTTTGGTGGTTGTGCAATTAAGTGGTTAAACCAAAGAATAAGAT 1314
Query 1312 GTTGATATAGCGATGAGCCTTGATTAGTTTTAGGGTTTAGCCAGTGCCGGCCCGTCTTTG 1371
||||||||||||||||||||| ||||||||||||||||||| | || | |||||||
Sbjct 1315 GTTGATATAGCGATGAGCCTTAATTAGTTTTAGGGTTTAGC--G--CC--C--GTCTTTG 1366
Query 1372 TTTTGTGAGGAATTGGGGTTA 1392
|||||| | ||||||||||||
Sbjct 1367 TTTTGTTATGAATTGGGGTTA 1387
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 68573944470
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5