BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495243
Length=916
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51780.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-bin... 1358 0.0
> AT5G51780.1 | Symbols: | basic helix-loop-helix (bHLH) DNA-binding
superfamily protein | chr5:21034823-21036773 FORWARD
LENGTH=908
Length=908
Score = 1358 bits (735), Expect = 0.0
Identities = 867/926 (94%), Gaps = 28/926 (3%)
Strand=Plus/Plus
Query 1 GGGACAAGAGAAGAAGACGGTGTACGAAGCTGACATGTAGTACAGATAATAACAACGACA 60
|||||||||||||||||||||||||||||||||||||| |||| |||||| |||||||
Sbjct 1 GGGACAAGAGAAGAAGACGGTGTACGAAGCTGACATGTGGTACTGATAAT---AACGACA 57
Query 61 TGGAGAAGATGATGCATAGAGAAACTGAGAGACAAAGGAGACAAGAAATGGCTTCTCTTT 120
|||||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||
Sbjct 58 TGGAGAAGATGATGCACAGAGAAACTGAGAGGCAAAGGAGACAAGAAATGGCTTCTCTTT 117
Query 121 ATGCTTCTCTTCGTTCTCTTCTCCCTCTTCACTTCATCAAGGGTAAGCGTTCGACGTCAG 180
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 118 ATGCCTCTCTTCGTTCTCTTCTCCCTCTTCACTTCATCAAGGGTAAGCGTTCGACGTCAG 177
Query 181 ATCAAGTCAACGAGGCGGTTAACTACATAAAGTATCTACAGAGGAAGATCAAGGAGCTGA 240
||||||||||||||||||| |||||||||||||||||||||||||||||||||||||| |
Sbjct 178 ATCAAGTCAACGAGGCGGTGAACTACATAAAGTATCTACAGAGGAAGATCAAGGAGCTAA 237
Query 241 GTGTGAGGAGAGATTATCTCATGGTACTGTCTAGAGGAAGCTTCTTGGGTAGTAGTAATG 300
|||||||||||||| ||||||||||||||||||||||||| || ||||||||||||||||
Sbjct 238 GTGTGAGGAGAGATGATCTCATGGTACTGTCTAGAGGAAGTTTATTGGGTAGTAGTAATG 297
Query 301 ATGATTCTAAGGAGGAGGTGGAGATGATGAGTAGGAAGAATCATGTGGTGGTTCGTCAGT 360
||||| |||||| || ||||||||||| ||| |||| ||||||||||||||||||||||
Sbjct 298 GTGATTTTAAGGAAGATGTGGAGATGATAAGTGGGAAAAATCATGTGGTGGTTCGTCAGT 357
Query 361 GTTTGGTGGGTGTGGAAATCGTATTTAGTAGCCGCTGCTGCGGTGGCCAACCGCGGTTTT 420
||||||| |||||||||||| | || ||||||||||||||||||||||||||||||||||
Sbjct 358 GTTTGGTTGGTGTGGAAATCATGTTGAGTAGCCGCTGCTGCGGTGGCCAACCGCGGTTTT 417
Query 421 CGAGTGTTCTTCAAGTGCTTAGTGAACATGGTCTCTGCCTTCTTAACTCCATCTCCTCTA 480
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 418 CGAGTGTTCTTCAAGTGCTTAGTGAATATGGTCTCTGCCTTCTTAACTCCATCTCCTCTA 477
Query 481 TTGTTGATGATAGGCTAATTTACACCATACAGGCCGAGGTCAACGATATGGCTTTGATGA 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 478 TTGTTGATGATAGGCTAGTTTACACCATACAGGCCGAGGTCAACGATATGGCTTTGATGA 537
Query 541 TTGACTTAGCAGAACTTGAAAAGAGATTAATCAGAATGAAGTAAATTCTTGTTGAGTAGG 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 538 TTGACTTAGCAGAACTTGAAAAGAGATTAATCAGAATGAAGTAAATTCTTGTTGAGTAGG 597
Query 601 TTGCTCTAATAACTTGTCAAGCAAACGACATATATAGTTAAGTACGTACTTTATTCGTAC 660
||||||| |||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 598 TTGCTCT--TAACTTGTCAAGTAAACGACATATATAGTTAAGTACGTACTTTATTCGTAC 655
Query 661 TTGTGATTGTTGTGTCGTGTTCACATCTATCTGTATGTATAT-AT-TTCTATTCCATCTG 718
||||||||||||||||||||||||||||||||||||||||| || || |||||||||||
Sbjct 656 CTGTGATTGTTGTGTCGTGTTCACATCTATCTGTATGTATATTATGTT-TATTCCATCTG 714
Query 719 ATTGTCATTAGCTCATTTAGTTGTTTATAGATCGGAAAATTATGTTTCCCATAAGCTGAG 778
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 715 ATTGTCATTAGCTCATTTAGTTGTTTATAGATCGGAAAATTATGTTTCCCATAAGCTGAG 774
Query 779 TTAGTACCTT-ATC-tt-t-t-ttttttCCTTAATATACGTTATGGTTATATGCTATGAT 833
||||||| || || || | | |||||| ||||||| ||||||||||||||||||||
Sbjct 775 TTAGTAC-TTCATGGTTATATGTTTTTT--TTAATATT--TTATGGTTATATGCTATGAT 829
Query 834 TGGGATTTTATTTTAATAAATTTCaaaaa-aaCAT-AAAGTTTTT-GATGGTGTCTAGCT 890
||||||||||||| | | ||||||||||| || || ||||||||| | ||||||||||
Sbjct 830 TGGGATTTTATTTGA-TCAATTTCAAAAAGAA-ATTAAAGTTTTTAG-TGGTGTCTAG-- 884
Query 891 AGGCAGTGTTCGAAGTTGGTAGCATT 916
| ||||||| |||| ||||||||||
Sbjct 885 -G-CAGTGTTTGAAGCTGGTAGCATT 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 44758624977
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5