BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495246
Length=1273
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51810.1 | Symbols: GA20OX2, AT2353, ATGA20OX2 | gibberellin... 1908 0.0
AT4G25420.1 | Symbols: GA5, GA20OX1, AT2301, ATGA20OX1 | 2-oxog... 754 0.0
> AT5G51810.1 | Symbols: GA20OX2, AT2353, ATGA20OX2 | gibberellin
20 oxidase 2 | chr5:21055188-21056808 REVERSE LENGTH=1400
Length=1400
Score = 1908 bits (1033), Expect = 0.0
Identities = 1152/1209 (95%), Gaps = 10/1209 (1%)
Strand=Plus/Plus
Query 1 AACaaaacaaaaaaaaaacccaaaaactctcaagaaaaaaagaaaaaaagaaaaaaaaaa 60
||||| |||||| |||||||| |||||||||||| ||| |||||||| |||| |||
Sbjct 11 AACAAGACAAAACAAAAACCCCAAAACTCTCAAG----AAA-AAAAAAAG--AAAAGAAA 63
Query 61 TGGCGATATTATGCACAACAACATCTCCGGCAGAGAAAGAACACGAACCAAAACAAGATC 120
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 64 TGGCGATACTATGCACAACAACATCTCCGGCAGAGAAAGAACACGAACCAAAACAAGATC 123
Query 121 TTGAAAAAGACCAAA---CTCCATTAATCCTTAATCCTTCCCTTCTAAACCTCCAATCCC 177
||||||||||||||| ||||| ||||| |||| ||||| ||||| |||||||||||||
Sbjct 124 TTGAAAAAGACCAAACTTCTCCACTAATCTTTAACCCTTCTCTTCTTAACCTCCAATCCC 183
Query 178 AAATCCCAAACCAGTTCATTTGGCCAGACGAAGAGAAACCTTCCATTGACATTCCCGAGC 237
||||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 184 AAATCCCAAACCAATTCATTTGGCCAGACGAAGAGAAACCTTCCATTGACATTCCAGAGC 243
Query 238 TCAACGTCCCTTTCATCGATCTCTCAAGCCAAGACTCAACTCTTGAAGCTCCTAGAGTCA 297
|||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 244 TCAACGTCCCGTTCATCGATCTCTCAAGCCAAGACTCGACTCTTGAAGCTCCTAGAGTCA 303
Query 298 TCGCAGAAGCTTGCACCAAACACGGCTTCTTCCTCGTCGTCAATCATGGCGTCAGCGAGT 357
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 304 TCGCAGAAGCTTGCACCAAACACGGCTTCTTCCTCGTCGTCAATCATGGCGTCAGCGAGT 363
Query 358 CACTCATATCCGACGCTCACCGTTTAATGGAACGTTTCTTCGACATGCCTCTCGCCGGTA 417
|||| ||| | || ||||||||||| |||||| ||||||||||||||||||||||||| |
Sbjct 364 CACTAATAGCGGATGCTCACCGTTTGATGGAAAGTTTCTTCGACATGCCTCTCGCCGGCA 423
Query 418 AACAGAAAGCTCAGAGAAAACCCGGTGAGAGCTGTGGCTACGCAAGTAGCTTCACCGGTA 477
||||||||||||||||||||||||||||||| |||||||| ||||||||||||||||| |
Sbjct 424 AACAGAAAGCTCAGAGAAAACCCGGTGAGAGTTGTGGCTATGCAAGTAGCTTCACCGGCA 483
Query 478 GATTCTCCACCAAGCTCCCATGGAAGGAGACTCTCTCTTTTCAGTTTTCAAACGAGAATA 537
|||||||||| |||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 484 GATTCTCCACTAAGCTCCCATGGAAGGAGACTCTCTCTTTTCAGTTTTCCAACGATAATA 543
Query 538 GTGGCTCAAGAACCGTTCAAGATTACTTTTCCGATACATTAGGACAAGAGTTCGAGCAGG 597
||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 544 GTGGCTCGAGAACCGTTCAAGATTACTTTTCCGATACATTAGGACAAGAGTTCGAGCAGT 603
Query 598 TTGGGAAGGTGTATCAAGACTATTGTGAAGCAATGAGTTCTCTATCACTCAAGATCATGG 657
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 604 TTGGGAAGGTGTATCAAGACTATTGTGAAGCAATGAGTTCTCTATCACTCAAGATCATGG 663
Query 658 AGCTTATGGGGTTAAGTTTAGGCGTAAACCGAGACTATTTCCGAGGATTTTTCCAAGAGA 717
||||| |||| |||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 664 AGCTTCTGGGCTTAAGTTTAGGCGTAAACCGAGACTATTTCCGAGGATTTTTCGAAGAGA 723
Query 718 ATGATTCGATAATGAGGCTCAATCATTATCCTCCATGCCAAACACCAGAGCTCACATTAG 777
| ||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||
Sbjct 724 ACGATTCGATAATGAGGCTCAATCATTATCCTCCATGCCAAACACCAGATCTCACGTTAG 783
Query 778 GTACAGGACCTCATTGTGATCCAAGTTCTTTGACCATCCTTCATCAAGACCATGTCAATG 837
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 784 GTACAGGACCTCATTGTGATCCAAGTTCTTTGACCATCCTTCATCAAGACCATGTCAATG 843
Query 838 GCCTTCAAGTCTTTGTTGACAATCAATGGCAATCTATTCGTCCCAATCCCAAGGCTTTCG 897
|||||||||||||||| ||||||||||||||||| |||||||||||||||||||||||||
Sbjct 844 GCCTTCAAGTCTTTGTCGACAATCAATGGCAATCCATTCGTCCCAATCCCAAGGCTTTCG 903
Query 898 TTGTCAATATTGGTGACACTTTCATGGCTCTATCGAACGGGATATTCAAGAGTTGTTTGC 957
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 904 TTGTCAATATTGGTGACACTTTCATGGCTCTATCGAACGGGATATTCAAGAGCTGTTTGC 963
Query 958 ATAGAGCGGTTGTGAATAGGGAAAGCGCGAGGAAATCGATGGCGTTTTTCTTGTGTCCGA 1017
||||||||||||||||||| || |||||||| ||||||||||||||||||||||||||||
Sbjct 964 ATAGAGCGGTTGTGAATAGAGAGAGCGCGAGAAAATCGATGGCGTTTTTCTTGTGTCCGA 1023
Query 1018 AGAAAGACAAAGTGGTGAAACCACCAAGTGATATTTTGGAGAAGATGACAACAAGAAAAT 1077
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 1024 AGAAAGACAAAGTGGTGAAACCACCAAGTGATATTTTGGAGAAGATGAAAACAAGAAAAT 1083
Query 1078 ACCCTGACTTCACTTGGTCTATGTTCCTTGAGTTCACTCAAAAACATTACAGAGCAGATG 1137
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1084 ACCCTGACTTCACTTGGTCTATGTTCCTTGAGTTCACTCAAAAACATTACCGAGCAGATG 1143
Query 1138 TGAATACTCTCGATTCCTTTTCAAATTGGGTCATTACCAACAAAAATCCCATCTAAGAAA 1197
|||||||||||||||||||||| |||||||| ||||||||||| ||||||||||||||||
Sbjct 1144 TGAATACTCTCGATTCCTTTTCGAATTGGGTTATTACCAACAACAATCCCATCTAAGAAA 1203
Query 1198 CAACATTAT 1206
||| |||||
Sbjct 1204 CAAAATTAT 1212
> AT4G25420.1 | Symbols: GA5, GA20OX1, AT2301, ATGA20OX1 | 2-oxoglutarate
(2OG) and Fe(II)-dependent oxygenase superfamily
protein | chr4:12990884-12992458 REVERSE LENGTH=1281
Length=1281
Score = 754 bits (408), Expect = 0.0
Identities = 897/1127 (80%), Gaps = 57/1127 (5%)
Strand=Plus/Plus
Query 77 AACAACATCTCCGGCAGAGAAAGAACACGAACCAAAACAAGATCTT-GAAAAAGACCAAA 135
|||||||||||| | || | ||||| || |||| || | || ||| |||| | ||||
Sbjct 67 AACAACATCTCCTG-AG-G-AAGAAGACAAACCGAAGCTAGGCCTTGGAAATA-TTCAAA 122
Query 136 CTCCATTAATCCTT-AATCCTTCCCTTCTAAACCTCCAATCCCAA-ATCCCAAACCAGTT 193
|||| ||||| ||| || ||||| | || ||||| ||| |||| ||||||||||| ||
Sbjct 123 CTCCGTTAAT-CTTCAACCCTTCAATGCTTAACCTTCAA-GCCAATATCCCAAACCAATT 180
Query 194 CATTTGGCCAGACGAAGAGAAACCTTCCATTGACATTCCCGAGCTCAACGTCCCTTTCAT 253
||| ||||| ||||| || ||||||||||| || ||| |||||| | || ||| ||||
Sbjct 181 CATCTGGCCTGACGACGAAAAACCTTCCATCAACGTTCTCGAGCTTGATGTTCCTCTCAT 240
Query 254 CGATCTCTC-AAGCCAAGACTC--A---A--CT---C-TT-GAAGCTCCTAGAGTCATCG 300
||| || || || || ||| | | || | || || ||| | ||| | |||
Sbjct 241 CGACCT-TCAAAACCTTCTCTCTGATCCATCCTCCACTTTAGATGCTTCGAGACTGATCT 299
Query 301 CAGAAGCTTGCACCAAACACGGCTTCTTCCTCGTCGTCAATCATGGCGTCAGCGAGTCA- 359
| || || || | || ||||| ||||||||||| |||||||| ||| |||||||| |
Sbjct 300 CTGAGGCCTGTAAGAAGCACGGTTTCTTCCTCGTGGTCAATCACGGCATCAGCGAG-GAG 358
Query 360 CTCATATCCGACGCTCACCGTTTA-ATGGA-ACGTTTCTTCGACATGCCTCTCGCCGGTA 417
|| || || |||||||| | || | || || ||||| || ||||||||| ||| |
Sbjct 359 CTTATTTCAGACGCTCA-TGAATACA-CGAGCCGCTTCTTTGATATGCCTCTCTCCGAAA 416
Query 418 AACAGAAAGCTCAGAGAAAACCCGGTGAGAGCTG-TGGCTACGCAAGTAGCTTCACCGGT 476
|||||| | || |||||| |||||||||| || |||||||||||| || ||||||||
Sbjct 417 AACAGAGGGTTCTTAGAAAATCCGGTGAGAG-TGTTGGCTACGCAAGCAGTTTCACCGG- 474
Query 477 A-GATTCTCCACCAAGCTCCCATGGAAGGAGACTCTCTCTTTTCAGTTTT-CAAACGAGA 534
| | |||||||||||||| |||||||||||||| || ||||| | ||||| | ||||
Sbjct 475 ACGCTTCTCCACCAAGCTTCCATGGAAGGAGACCCTTTCTTTCCGGTTTTGC-GACGA-C 532
Query 535 AT-AGTGGCTCAAGAA-CCGTTCAAGATTACTTTTCCGATACATTAGGACAAGAG-TTCG 591
|| || |||||| || |||||||||||||||| | |||| | || ||||| | | |||
Sbjct 533 ATGAGCCGCTCAA-AATCCGTTCAAGATTACTTCTGCGATGCGTTGGGACATGGGTTTC- 590
Query 592 AG-CAGGTTGGGAAGGTGTATCAAGACTATTGTGAAGCAATGAGTTCTCTATCACTCAAG 650
|| || ||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct 591 AGCCA-TTTGGGAAGGTGTATCAAGAGTATTGTGAAGCAATGAGTTCTCTATCACTGAAG 649
Query 651 ATCATGGAGCTTATGGGGTTAAGTTTAGGCGTAAACCGAGACTA-TTTCCGAG-GATTTT 708
|||||||||||| ||||| |||||||||||||||| || ||||| ||| ||| | ||||
Sbjct 650 ATCATGGAGCTTCTGGGGCTAAGTTTAGGCGTAAAACGGGACTACTTTA-GAGAG-TTTT 707
Query 709 TCCAAGAGAATGATTCGATAATGAGGCTCAATCATTATCCTCCATGCC-AAACACCAGAG 767
|| |||| || ||||| |||||||| || ||| | || |||||||| ||| ||||||
Sbjct 708 TCGAAGAAAACGATTCAATAATGAGACTGAATTACTACCCTCCATGTATAAA-ACCAGAT 766
Query 768 CTCACATTAGGTACAGGACCTCATTGTGATCCAAGTTCT-TTGACCATCCTTCATCAAGA 826
|||||| |||| |||||||||||||||||||||| ||| || ||||||||||| |||||
Sbjct 767 CTCACACTAGGAACAGGACCTCATTGTGATCCAACATCTCTT-ACCATCCTTCACCAAGA 825
Query 827 CCATGTCAATGGCCTTCAAGTCTTTGTTGACAATCAATGGCAATCTATTCGTCCCAATCC 886
|||||| |||||||||||||||||||| || |||||||||| || ||||||||||| ||
Sbjct 826 CCATGTTAATGGCCTTCAAGTCTTTGTGGAAAATCAATGGCGCTCCATTCGTCCCAACCC 885
Query 887 CAAGGC-TTTCGTTGTCAATATTGGTGACACTTTCATGGCTCTATCGAACGGGATATTCA 945
|||||| ||| || |||||||| || || |||||||||||||||||||||| | || ||
Sbjct 886 CAAGGCCTTT-GTGGTCAATATCGGCGATACTTTCATGGCTCTATCGAACGATAGATACA 944
Query 946 AGAGTTGTTTGCATAGAGCGGTTGTGAATAGGGAAAGCGCGAGGAAATCGA-TGGCGTTT 1004
|||| || ||||| | ||||| ||||| || || |||| ||||||||| | | || ||
Sbjct 945 AGAGCTGCTTGCACCGGGCGGTGGTGAACAGCGAGAGCGAGAGGAAATC-ACTTGCATTC 1003
Query 1005 TTCTTGTGTCCGAAGAAAGACAAAGTGGTGAAACCACCAAGTGATATTTTGGAGAAG-AT 1063
|||||||||||||| ||||||| ||| |||| ||||| || || ||||||| | | ||
Sbjct 1004 TTCTTGTGTCCGAAAAAAGACAGAGTAGTGACGCCACCGAGAGAGCTTTTGGACA-GCAT 1062
Query 1064 GACAACAAGAAAATACCCTGACTTCACTTGGTCTATGTTCCTTGAGTTCACTCAAAAACA 1123
||| |||||| ||||||||||||||| |||||||||||||||||||||||||| |||||
Sbjct 1063 CACATCAAGAAGATACCCTGACTTCACATGGTCTATGTTCCTTGAGTTCACTCAGAAACA 1122
Query 1124 TTACAGAGCAGATGTGAATACTCTCGATTCCTTTTCAAATTGGGTCA 1170
||| |||||||| |||| |||||| | |||||||| ||||| |||
Sbjct 1123 TTATAGAGCAGACATGAACACTCTCCAAGCCTTTTCAGATTGGCTCA 1169
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62600079615
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5