BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495247
Length=1984
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51820.1 | Symbols: PGM, ATPGMP, PGM1, STF1 | phosphoglucomu... 2977 0.0
> AT5G51820.1 | Symbols: PGM, ATPGMP, PGM1, STF1 | phosphoglucomutase
| chr5:21063368-21068057 REVERSE LENGTH=2159
Length=2159
Score = 2977 bits (1612), Expect = 0.0
Identities = 1884/2009 (94%), Gaps = 43/2009 (2%)
Strand=Plus/Plus
Query 1 ATGACGTCGACCTACACGAGATTCGATACCGTATTTCTCTTTTCTAGGTTCGCCGGCGCT 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 125 ATGACGTCGACCTACACGAGATTCGATACCGTATTTCTCTTTTCTAGGTTCGCCGGCGCT 184
Query 61 AAGTATTCGCCGTTGTTTCCCTCACCTTCTTCGTCACACTCTTCTCTTCTACCTTCCGGA 120
|||||||||||||| || || | || | |||| | ||| | |||| |||||||
Sbjct 185 AAGTATTCGCCGTTATTGCCGT---CTCCGTCGT-TTA--CTT-T-ATCTA-CTTCCGGC 235
Query 121 ATTCATCTTAGAACCAAACCGACTTCGCGTTTACACTCGATTATCGCATCCTCTTCATC- 179
|||||| | ||||||||||||| ||| ||||| ||||||||||| |||||||| |||||
Sbjct 236 ATTCATATCAGAACCAAACCGAATTCTCGTTTTCACTCGATTATAGCATCCTCCTCATCT 295
Query 180 T-ATC----GTCGCCGGAACTGAAAGCATTGAGATTAAATCGTTGCCGACGAAGCCTATT 234
| ||| |||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 296 TCATCTGTAGTCGCCGGAACTGATAGCATTGAGATTAAATCGTTGCCGACGAAGCCTATT 355
Query 235 GAAGGACAAAAGACTGGAACTAGCGGACTCCGGAAGAAGGTGAAAGTTTTCATGGAAGAG 294
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 GAAGGACAAAAGACTGGAACTAGCGGACTCCGGAAGAAGGTGAAAGTTTTCATGGAAGAT 415
Query 295 AATTATCTAGCCAATTGGATTCAGGCATTGTTTAATTCATTGCCACTGGAGAATTATAAG 354
|||||| ||||||| |||||||||||||||||||||||||||||||| ||| ||||||||
Sbjct 416 AATTATTTAGCCAACTGGATTCAGGCATTGTTTAATTCATTGCCACTTGAGGATTATAAG 475
Query 355 AATGCGACGTTGGTTTTAGGAGGTGATGGTCGTTACTTTAACAAAGAAGCTTCACAGATC 414
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 476 AATGCAACGTTGGTTTTAGGAGGTGATGGTCGTTACTTTAACAAAGAAGCTTCACAGATC 535
Query 415 ATTATTAAAATTGCTGCTGGGAATGGAGTTGGGCAAATTTTAGTTGGAAAGGAAGGCATT 474
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 536 ATTATCAAAATTGCTGCTGGGAATGGAGTTGGACAAATTTTAGTTGGAAAGGAAGGCATT 595
Query 475 TTGTCAACCCCAGCGGTTTCCGC-----T-------------GCAAATGGAGGATTCATT 516
||||||||||||||||||||||| | ||||||||||||||||||
Sbjct 596 TTGTCAACCCCAGCGGTTTCCGCTGTAATCAGGAAAAGAAAGGCAAATGGAGGATTCATT 655
Query 517 ATGAGTGCAAGTCATAATCCTGGTGGACCTGAATATGACTGGGGTATCAAGTTCAATTAC 576
||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 656 ATGAGTGCAAGCCATAATCCTGGTGGACCTGAATATGACTGGGGTATCAAGTTCAATTAC 715
Query 577 AGCAGTGGTCAGCCTGCTCCTGAAACCATTACTGACAAAATTTATGGAAATACACTTTCA 636
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 716 AGCAGTGGTCAGCCTGCTCCTGAAACCATTACTGACAAAATATATGGAAATACACTTTCA 775
Query 637 ATCTCTGAGATTAAGGTGGCAGAGATTCCCGACATTGATCTTTCTCATGTTGGAGTTACC 696
||||||||||||||||||||||||||||| || |||||||||||||| |||||||| |||
Sbjct 776 ATCTCTGAGATTAAGGTGGCAGAGATTCCTGATATTGATCTTTCTCAAGTTGGAGTGACC 835
Query 697 AAATATGGGAATTTCAGTGTGGAAGTTATAGATCCTGTTTCTGACTACTTGGAGCTCATG 756
|||||||||||||||||||| |||||||||||||||||||| ||||| ||||||||||||
Sbjct 836 AAATATGGGAATTTCAGTGTAGAAGTTATAGATCCTGTTTCCGACTATTTGGAGCTCATG 895
Query 757 GAGGACGTGTTCGACTTTGATCTCATCAGAGGTCTTCTTTCAAGATCAGATTTTGGGTTT 816
||||| || ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 896 GAGGATGTTTTCGACTTTGATCTCATCAGAGGTCTTCTTTCAAGATCAGATTTTGGGTTC 955
Query 817 ATGTTTGATGCCATGCATGCTGTTACTGGTGCTTATGCGAAACCAATCTTTGTCGATAAT 876
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||
Sbjct 956 ATGTTTGATGCCATGCATGCTGTTACTGGTGCTTATGCGAAACCAATTTTTGTCGACAAT 1015
Query 877 CTTGGAGCCAAACCGGATTCAATTTCCAATGGAGTTCCCCTGGAAGATTTTGGGCATGGC 936
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1016 CTTGGAGCCAAACCGGATTCAATTTCCAACGGAGTTCCCCTGGAAGATTTTGGGCATGGC 1075
Query 937 CATCCAGATCCTAATTTAACATATGCAAAGGATTTGGTTGATGTCATGTATCGTGACAAT 996
||||| ||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1076 CATCCTGATCCTAATTTGACATATGCAAAGGATTTGGTTGATGTCATGTATCGTGACAAT 1135
Query 997 GGACCTGATTTCGGAGCAGCAAGTGATGGTGATGGTGACAGAAATATGGTTTTAGGAAAC 1056
||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1136 GGACCGGATTTCGGAGCAGCAAGTGATGGTGATGGTGACAGAAATATGGTTTTAGGAAAC 1195
Query 1057 AAGTTCTTTGTCACTCCTTCAGACTCTGTCGCTATCATCGCTGCCAATGCACAAGAAGCA 1116
|| |||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||
Sbjct 1196 AAATTCTTTGTCACTCCTTCAGACTCTGTAGCTATCATCGCAGCCAATGCACAAGAAGCA 1255
Query 1117 ATTCCATATTTCCGTGCTGGTCCTAAGGGGCTAGCACGCTCTATGCCAACAAGTGGTGCT 1176
|||||||||||||||||||||||||||||||| ||||| |||||||| ||||||||||||
Sbjct 1256 ATTCCATATTTCCGTGCTGGTCCTAAGGGGCTGGCACGTTCTATGCCGACAAGTGGTGCT 1315
Query 1177 CTTGATCGTGTTGCGGAGAAGTTGAAGCTTCCTTTCTTCGAGGTTCCCACCGGATGGAAA 1236
|||||||||||||| ||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1316 CTTGATCGTGTTGCCGAGAAGTTGAAGCTTCCTTTCTTCGAGGTTCCCACTGGATGGAAA 1375
Query 1237 TTTTTTGGAAATCTTATGGATGCTGGAAAATTGTCAATCTGTGGAGAAGAGAGTTTTGGC 1296
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1376 TTTTTTGGAAATCTTATGGATGCTGGAAAATTGTCAATCTGTGGAGAAGAGAGCTTTGGC 1435
Query 1297 ACAGGTTCTGATCACATCCGTGAGAAAGATGGCATATGGGCTGTGTTGGCGTGGCTTTCG 1356
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1436 ACAGGTTCTGATCACATCCGTGAGAAGGATGGAATATGGGCTGTGTTGGCGTGGCTTTCG 1495
Query 1357 ATCCTAGCTCATCGCAACAAGGACACAAAACCAGGGGACAAGTTGGTGTCTGTTGCAGAT 1416
||||| |||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 1496 ATCCTTGCTCATCGCAACAAGGACACGAAACCAGGGGACAAGTTGGTGTCTGTTGCAGAT 1555
Query 1417 GTTGTAAAAGAGTATTGGGCGACATACGGAAGGAACTTTTTCTCAAGATACGACTATGAA 1476
||||| ||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 1556 GTTGTGAAAGAGTATTGGGCGACATACGGAAGGAACTTTTTTTCAAGATACGACTATGAA 1615
Query 1477 GAGTGTGAATCTGAAGGAGCCAATAAAATGATCGAGTATCTGAGAGATATCGTGTCTAAA 1536
|| |||||||||||||||||||||||||||||||||||||| ||||| ||| |||||||
Sbjct 1616 GAATGTGAATCTGAAGGAGCCAATAAAATGATCGAGTATCTTAGAGAAATCTTGTCTAAG 1675
Query 1537 AGCAAGGCCGGTGAAAG-TTATGGAAACTATGTCCTCCAGTTTGCAGATGACTTTTCATA 1595
||||||||||||| | | |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1676 AGCAAGGCCGGTG-ACGTTTATGGAAACTATGTCCTCCAGTTTGCAGATGACTTCTCATA 1734
Query 1596 CACAGACCCTGTTGATGGAAGTGTTGCATCCAAGCAAGGTGTTCGGTTTGTGTTCACGGA 1655
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1735 CACAGACCCTGTTGATGGAAGTGTTGCATCCAAGCAAGGTGTTCGGTTTGTGTTCACGGA 1794
Query 1656 TGGATCCAGAATCATATTTCGTTTATCCGGAACTGGTTCGGCTGGAGCTACAGTTCGAAT 1715
|||||||||||||||||||||||||||||||||||| || |||||||||||||| |||||
Sbjct 1795 TGGATCCAGAATCATATTTCGTTTATCCGGAACTGGCTCAGCTGGAGCTACAGTGCGAAT 1854
Query 1716 ATACATTGAACAATATGAGCCAGACGTTTCAAAGCATGATGTTGATGCACAAATAGCTCT 1775
|||||||||||||| |||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 1855 ATACATTGAACAATTTGAGCCAGACGTTTCAAAACATGATGTGGATGCACAAATAGCTCT 1914
Query 1776 AAAACCTTTAATTGATCTTGCATTGTCTGTATCAAAGCTGAAGGAATTCACAGGGAGGGA 1835
||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 1915 TAAACCTTTAATCGATCTTGCATTGTCTGTATCAAAGCTGAAGGACTTCACAGGGAGGGA 1974
Query 1836 GAAGCCCACTGTCATCACATGAAGAATAAAATCCTGTGTCACATGGTCTTTTTGAAAAGG 1895
||||||||||||||| ||||||||| || ||||||||||||| ||| || ||||
Sbjct 1975 GAAGCCCACTGTCATTACATGAAGAG-AA------GTGTCACATGGTCCTTTCGATAAGG 2027
Query 1896 CAAGTTGGGTTCCTGACTTCAGTTTTGTCTGCCATGTTTATTTGAAAAATTCCAGAGCAA 1955
||| |||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 2028 CAATTTGGGTTCCTGACTTCAGTTTTGTCTGCCATGTTTATTTGAAAA-TTCCAGAGCAA 2086
Query 1956 TGAAATGCTTATCAGTGTAACATATATAA 1984
||||||||||||| ||||||||||||||
Sbjct 2087 TGAAATGCTTATCCTTGTAACATATATAA 2115
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 98292667110
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5