BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495249
Length=1010
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51840.1 | Symbols: | unknown protein; Has 30201 Blast hits... 1341 0.0
> AT5G51840.1 | Symbols: | unknown protein; Has 30201 Blast hits
to 17322 proteins in 780 species: Archae - 12; Bacteria -
1396; Metazoa - 17338; Fungi - 3422; Plants - 5037; Viruses
- 0; Other Eukaryotes - 2996 (source: NCBI BLink). | chr5:21071944-21074438
FORWARD LENGTH=1244
Length=1244
Score = 1341 bits (726), Expect = 0.0
Identities = 932/1026 (91%), Gaps = 35/1026 (3%)
Strand=Plus/Plus
Query 1 TCAAAATCAAAATCCGGGACGATAATTCT----CACGTTCTCTCCATCACCTTCCCTCGA 56
||||||||||||||||||||||||||||| |||| | |||||||||| |||||||||
Sbjct 18 TCAAAATCAAAATCCGGGACGATAATTCTCGCACACG-T-TCTCCATCACTTTCCCTCGA 75
Query 57 TCCAAACCAGAGCGAAGAGTGGGAGCTACACGCGAatcatcatcatcatcatcTCTACGT 116
||| || | | | ||||||||| ||||||||||||| | ||||| | | |
Sbjct 76 TCC-AA--A-A-C-CAGAGTGGGAACTACACGCGAATC--GA--ATCAT-A----AATGG 120
Query 117 AATGTGAATTTTGAATTCGAGGAAGAAGGCGAAATCGGAGCATTGTTGGATCGAATTTTG 176
||||||||||||||| |||||||||||| ||||||||||||||| |||||| || |||||
Sbjct 121 AATGTGAATTTTGAAATCGAGGAAGAAGACGAAATCGGAGCATTATTGGATTGAGTTTTG 180
Query 177 AAG--TTT-GGAGAAGGAAATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAGC 233
||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 181 AAGTTTTTAGGAGAAGGAAATGATGGCGTCGGATCCAAAACTGAAGGCTGAGATCGGAGC 240
Query 234 CGATGGTCTTGCAAGAGAAGCTCCTGTTATTGCTTACACAGAGAAGATAATCGAAGAAGA 293
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 241 CGATGGTCTTGCAAGAGAAGCTCCTGTTATTGCTTACACAGAGAAGATAATCGAGGAAGA 300
Query 294 GCAAGTTCAGTTGAGGAAATATATTGAGGAGAACTATACAAAGATTAGGGATGTTGAAAG 353
|||||||||| |||||||||| |||||||||||||||||||| |||||||||||||||||
Sbjct 301 GCAAGTTCAGCTGAGGAAATACATTGAGGAGAACTATACAAAAATTAGGGATGTTGAAAG 360
Query 354 GGAATTTGGAAACCTTTCAATGGAATTGAAACTTACTGCTGGACCTAAGAAAGCAGCAAT 413
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 361 GGAATTTGGAAACCTTTCAATGGAATTGAAACTCACTGCTGGACCTAAGAAAGCAGCAAT 420
Query 414 GGAACACTTGCGAAAGAAAATCGAAGTCGCAACTGAAAAGATCCATGTTGCTAAGTTGAA 473
|||||||||| ||||||||||||||||| ||||||||| |||||||| ||||||||||||
Sbjct 421 GGAACACTTGAGAAAGAAAATCGAAGTCTCAACTGAAAGGATCCATGCTGCTAAGTTGAA 480
Query 474 AGAAGAAGAAGCTCGAAAGGCATTTGAAGCAGCATCAAAAGTTGTAAAGGATGAAGAAGC 533
|||||||||||| |||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 481 AGAAGAAGAAGCGCGAAAGGCATTTGAAGCAGCATCAAAAGTTGTGAAGGATGAAGAAGC 540
Query 534 AGCAAAACAGAGTCTTTGTGATGATTTAAACCGTCTGGTACAACAAAGCAGCAATACGCA 593
| |||||||||||||||| || ||||||||| ||||||||||||||||||||||||||||
Sbjct 541 AACAAAACAGAGTCTTTGCGAAGATTTAAACAGTCTGGTACAACAAAGCAGCAATACGCA 600
Query 594 GTACGCCAGACTTGAGGAATTAAAAAGAAGATTAGAAGCGCTGAATCCAAATAGATCATC 653
||||||||||||||||||||| ||||||||| |||||||| ||||||||||| |||||||
Sbjct 601 GTACGCCAGACTTGAGGAATTGAAAAGAAGACTAGAAGCGTTGAATCCAAATCGATCATC 660
Query 654 TACTTCTGTTCAGCAAGTCCAAGAACCGGAGATTAAATCTGTAGTAGACAACTCACCAGC 713
||||||| |||||||||| ||||||||||||| ||||||||||||||||| | |||||||
Sbjct 661 TACTTCTATTCAGCAAGTGCAAGAACCGGAGACTAAATCTGTAGTAGACAGCGCACCAGC 720
Query 714 AGCCAATGCTAATCAGACTCACACGGAAAAACCAGA---T------GGGAAGGAGGAGGG 764
||||||||| || || |||||| ||| |||||| || | ||||| ||||| ||
Sbjct 721 AGCCAATGCGAACCAAACTCACCCGGGAAAACCTGAAAATAACCACGGGAACGAGGAAGG 780
Query 765 AGGTAAAGAACATGGACAGAGGCCAGCAACAGCTGAAGGAGAATCAAAAGCGAAAAAGAA 824
|||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 781 TGGTAAAGAACATGGACAGAGACCAGCAACAGCTGAAGGAGAATCAAAAGCGAAAAAGAA 840
Query 825 ACCACAGAATCAAGGAAAGGGAAGAGGAGTTGGAATCATGAACAAAGGCAGAGGAGGTTG 884
||||||||||||||| | |||||||||| ||||||| |||||||||||||||||||||||
Sbjct 841 ACCACAGAATCAAGGGAGGGGAAGAGGAATTGGAATAATGAACAAAGGCAGAGGAGGTTG 900
Query 885 GACAGGTGCTGGATTCGATGTCGATGGTAGAACTTGAGATACACATATCTATTATAATAC 944
|||||||||||||||||||||||||||||||| |||||||||| ||||||| ||||| |
Sbjct 901 GACAGGTGCTGGATTCGATGTCGATGGTAGAAATTGAGATACATATATCTAG-ATAATCC 959
Query 945 ATATACCGAAAGCTGCCTTTTCAAATCAGAAGTATGTCAAATATTTTGTTACCAGGTACG 1004
||||||||||||| | | |||| ||||||||||||||||||||| ||||||||||||| |
Sbjct 960 ATATACCGAAAGC-GTCATTTCGAATCAGAAGTATGTCAAATATATTGTTACCAGGTATG 1018
Query 1005 TTCTAT 1010
||||||
Sbjct 1019 TTCTAT 1024
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49480634795
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5