BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495255
Length=1216
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51890.1 | Symbols: | Peroxidase superfamily protein | chr5... 1893 0.0
> AT5G51890.1 | Symbols: | Peroxidase superfamily protein | chr5:21090992-21092405
REVERSE LENGTH=1210
Length=1210
Score = 1893 bits (1025), Expect = 0.0
Identities = 1156/1218 (95%), Gaps = 13/1218 (1%)
Strand=Plus/Plus
Query 1 CATCAAATCCTCAAACAACTTCAAGACCAAAAGAGTGCTTTTCGAGGCCCaaaacaaaaa 60
|||||||||||||||||||||||||| | |||||||||||||||||||||||||| |
Sbjct 4 CATCAAATCCTCAAACAACTTCAAGAAC-AAAGAGTGCTTTTCGAGGCCCAAAAC----A 58
Query 61 caaaaaaCCATAAAATGGCATTCTCGAAAGTACTCATTTTCGCGATGACCA-TTGTGGTT 119
| | |||||||||||||||||||||| | ||||||||| ||||||| | ||| ||||
Sbjct 59 C--ATTACCATAAAATGGCATTCTCGAAGGGACTCATTTTTGCGATGA-TATTTGCGGTT 115
Query 120 TTGGCGATAGTTAGGCCCTCAGAAGCTGCTCTTGATGCTCATTACTATGATCGATCGTGC 179
|| |||||||||| |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 116 TTAGCGATAGTTAAGCCCTCAGAAGCTGCTCTTGATGCTCATTACTATGATCAATCGTGC 175
Query 180 CCCGCTGCTGAAAAAATCATACTTGAAACTGTTAGGAATGCTACTTTGTATGATCCCAAA 239
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 176 CCTGCTGCTGAAAAAATCATACTTGAAACTGTTAGGAATGCTACTTTGTATGATCCCAAA 235
Query 240 GTGCCTGCTCGTCTCCTCAGAATGTTCTTCCACGATTGCTTCATCAGGGGATGTGATGCG 299
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 236 GTGCCTGCTCGTCTCCTAAGAATGTTCTTCCACGATTGCTTCATCAGGGGATGTGATGCG 295
Query 300 TCCATTCTACTTGATTCGGCACGGTCAAACCAAGCTGAGAAGGATGGTCCTCCTAACATC 359
||||||||||| |||||| |||||||||||||||||||||||||||||||||| ||||||
Sbjct 296 TCCATTCTACTAGATTCGACACGGTCAAACCAAGCTGAGAAGGATGGTCCTCCAAACATC 355
Query 360 TCGGTACGGTCATTTTACGTGATCGAAGATGCTAAGAGAAAGCTCGAAAAGGCTTGTCCT 419
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 356 TCAGTACGGTCATTTTACGTGATCGAAGATGCTAAGAGAAAGCTCGAAAAGGCTTGTCCT 415
Query 420 CGTACCGTGTCTTGTGCCGATGTAATCGCCATCGCAGCCAGAGATGTGGTCACCCTGTCC 479
|||||||||||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 416 CGTACCGTGTCTTGTGCCGATGTAATCGCCATTGCCGCCAGAGATGTGGTCACCCTGTCC 475
Query 480 GGTGGTCCTTATTGGAGCGTATTGAAAGGGCGAAAAGATGGGACAATTTCGCGAGCCAAC 539
||||||||||||||||||||| |||||||||||||||| ||||||||||| |||||||||
Sbjct 476 GGTGGTCCTTATTGGAGCGTACTGAAAGGGCGAAAAGACGGGACAATTTCACGAGCCAAC 535
Query 540 GAGACTAGAAATCTCCCAGCACCAACGTTCAATGTTTCTCAACTGATCCAAAGCTTTGCA 599
|||||||||||||||||| |||||||||||||||||||||||||||| ||||||||||||
Sbjct 536 GAGACTAGAAATCTCCCACCACCAACGTTCAATGTTTCTCAACTGATACAAAGCTTTGCA 595
Query 600 GCAAGAGGATTGTCGGTGAAAGACATGGTTACACTCTCAGGTGGCCACACCATAGGGTTC 659
|||||||| ||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 596 GCAAGAGGCTTGTCGGTGAAAGACATGGTTACGCTCTCAGGTGGCCACACCATAGGGTTC 655
Query 660 TCTCACTGTTCTTCTTTCGAGTCCCGTCTTCAAAACTTCAGCAAAATCCATGACATTGAT 719
||||||||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct 656 TCTCACTGTTCTTCTTTCGAGTCCCGTCTTCAAAACTTCAGCAAATTCCATGACATAGAT 715
Query 720 CCTTCGATGAACTATGCGTTTGCACAAACCCTGAAAAGGAAATGTCCGAGATCGTCTAAC 779
|||||||||||||||||||| || |||||| |||||| |||||| |||||| | ||||||
Sbjct 716 CCTTCGATGAACTATGCGTTCGCGCAAACCTTGAAAAAGAAATGCCCGAGAACATCTAAC 775
Query 780 CGAGGCAAGAACGCAGGGACAGTCTTGGACTCTACGTCCTCGGTTTTCGACAATGTTTAC 839
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 776 CGAGGCAAGAACGCAGGGACAGTCTTGGACTCTACTTCCTCGGTTTTCGACAATGTTTAC 835
Query 840 TACAAGCAGATTTTGTCCGGGAAAGGAGTGTTTGGGTCTGATCAGGCCCTTCTAGGCGAT 899
|||||||| |||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 836 TACAAGCAAATTTTGTCCGGGAAAGGAGTGTTTGGGTCTGATCAGGCACTTCTAGGCGAT 895
Query 900 TCTCGGACTAAGTGGATCGTTGAGACGTTTGCTCGAGACCAAAAAGCTTTCTTCAAAGAG 959
|| ||||||||||||||||||||||||||||||| |||||||||||||||||||| ||||
Sbjct 896 TCCCGGACTAAGTGGATCGTTGAGACGTTTGCTCAAGACCAAAAAGCTTTCTTCAGAGAG 955
Query 960 TTTGCAGCTTCCATGGTAAAACTTGGAAACTTTGGAGTCAAGGAGACCGGACAAGTGAGA 1019
||||||||||||||||||||||||||||||||||||||||| ||||| |||||||| |||
Sbjct 956 TTTGCAGCTTCCATGGTAAAACTTGGAAACTTTGGAGTCAAAGAGACTGGACAAGTTAGA 1015
Query 1020 GTTAACACTCGCTTCGTCAACTAAAAGCATAACCCTAACAAGCAACCAAATGAGAGTTTT 1079
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1016 GTTAACACTCGCTTCGTCAACTAAAAGCATATTCCTAACAAGCAACCAAATGAGAGTTTT 1075
Query 1080 CTTTTCTTCAAATTTGATTTCATTTATACTTGATATATTATAATAATGTAGACCGGCCAA 1139
|||||||||||||||||||||||||||||||||||| | |||||||||||||||||||||
Sbjct 1076 CTTTTCTTCAAATTTGATTTCATTTATACTTGATAT-T-ATAATAATGTAGACCGGCCAA 1133
Query 1140 TTTATGGATCGGTTATTAAA-CCTTCTAATTCTCTATGAGTTGCAGAGTATGCTTTAAAA 1198
| |||||||||||| ||||| ||| ||||||||| |||||||||||||||||||||||||
Sbjct 1134 TATATGGATCGGTT-TTAAAACCTCCTAATTCTCCATGAGTTGCAGAGTATGCTTTAAAA 1192
Query 1199 GTAAATTTGTTCTGCTTC 1216
||||||||||||||||||
Sbjct 1193 GTAAATTTGTTCTGCTTC 1210
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 59738648550
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5