BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495258
Length=959
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51910.1 | Symbols: | TCP family transcription factor | ch... 1247 0.0
> AT5G51910.1 | Symbols: | TCP family transcription factor |
chr5:21094547-21095702 REVERSE LENGTH=1156
Length=1156
Score = 1247 bits (675), Expect = 0.0
Identities = 848/926 (92%), Gaps = 34/926 (4%)
Strand=Plus/Plus
Query 41 TTCTAGGGTTTTGTTGTAAATGGAATCGAATCAAGAAGGCAAAGCGATACAAGAGATTGA 100
|||||||||||||| |||||||||||||||||| |||||||| |||||||||| ||||||
Sbjct 99 TTCTAGGGTTTTGTGGTAAATGGAATCGAATCACGAAGGCAACGCGATACAAGTGATTGA 158
Query 101 CCAAGTAGCAACCATGACCCATCTGTCTGACCCGAATCCGAAAACCAAACCGGGTATGAT 160
||||||| |||||||||||||||||||||||||||||||||||||||||||||| | ||
Sbjct 159 CCAAGTAACAACCATGACCCATCTGTCTGACCCGAATCCGAAAACCAAACCGGG--T-AT 215
Query 161 GATGCTCATGAAACAAGAAGACGGGTATTTGCAGCCGGTGATGGCTAAACCGGCTCCGAA 220
||||||||||||||||||||||||||||||||||||||||| | ||||||||||||||||
Sbjct 216 GATGCTCATGAAACAAGAAGACGGGTATTTGCAGCCGGTGAAGACTAAACCGGCTCCGAA 275
Query 221 GAGAGCGA---CTAAAGACCGTCACACGAAAGTAGAAGGACGAGGTCGGAGGATCCGAAT 277
|||| ||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 276 GAGACCGACTTCTAAAGACCGTCACACGAAAGTAGAAGGACGAGGTCGGAGGATCCGAAT 335
Query 278 GCCTGCGGGTTGCGCTGCTCGGGTCTTTCAATTGACCCGTGAACTTGGTCACAAATCTGA 337
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 336 GCCGGCGGGTTGCGCTGCTCGGGTCTTTCAATTGACCCGTGAACTTGGTCACAAATCCGA 395
Query 338 CGGAGAAACCATTCGGTGGTTATTGGAACGAGCTGAACCGGCGATAATTGAAGCAACCGG 397
||||||||| || |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 396 CGGAGAAACGATACGGTGGTTATTGGAACGAGCTGAACCGGCGATAATTGAAGCAACCGG 455
Query 398 AACCGGGACTGTACCGGCTATTGCTGTTTCGGTTAACGGAACTTTAAAAATACCGACGAG 457
|||||| |||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct 456 AACCGGAACTGTACCGGCTATTGCTGTATCGGTTAACGGAACTTTAAAAATCCCGACGAG 515
Query 458 CGCTCC-G-GTAGAGAGTAACGGCGGTGGTGACGGTGACGGTGACGGTGACCTAATGAAG 515
| |||| | || || | | ||||||| || ||||||||||||||||||||| |||
Sbjct 516 CTCTCCAGTGTTGA-A-TGACGGCGGC-----CG-TGACGGTGACGGTGACCTAATAAAG 567
Query 516 AAACGGAGGAAGAGAAACTGTACGAGTGAGTTCGTAGACGTTAATGAACATGACAGCTGT 575
|||||||||||||||||||||||||| || ||||||||||||||||| || | | |||
Sbjct 568 AAACGGAGGAAGAGAAACTGTACGAGCGATTTCGTAGACGTTAATGA-CA-G-C---TGT 621
Query 576 TACAGCTCCGTTACTTCTGGGTTAGCTCCGATAACGGCGTCAAATTACGGTGTTAATATC 635
| ||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||
Sbjct 622 CATAGCTCCGTTACTTCTGGGTTAGCTCCGATAACGGCGTCAAACTACGGCGTTAATATC 681
Query 636 ATGAACGTCAATACGCATGGGTT-GATGCCGTTTTGGCCTATGGGTATGGGTACTACGTA 694
||||||| ||||| || ||||| | ||||||||||||||||||||||||||||| |||
Sbjct 682 CTGAACGTTAATACACAGGGGTTTG-TGCCGTTTTGGCCTATGGGTATGGGTACTGCGTT 740
Query 695 TGTTACTGGTGGGCCGAATCAAATGGGCCAAATGTGGGCTATTCCTACGGTTGCTACAGC 754
|||||||||||||||| ||||||||||||||||||||||||||||||| |||||||||||
Sbjct 741 TGTTACTGGTGGGCCGGATCAAATGGGCCAAATGTGGGCTATTCCTACCGTTGCTACAGC 800
Query 755 TTCGTTTCTGAACGTTGGTGCTACG-CCGGTGTCTAGTTACGACGTCTCAAACGCTTCAG 813
| |||||||||| |||||||||| | |||||||||||||| | |||||||||||||||
Sbjct 801 TCCGTTTCTGAATGTTGGTGCTA-GACCGGTGTCTAGTTATG---TCTCAAACGCTTCAG 856
Query 814 CCGCTGAACCGGAGATGGAAACGAGCGGTGGTGGTGGTGCGACGCAACCGCTGAGGGATT 873
|||||| |||||||||||||||||||||| || |||||||||||||||||||||
Sbjct 857 ACGCTGAGGCGGAGATGGAAACGAGCGGTGGCGGAA---CGACGCAACCGCTGAGGGATT 913
Query 874 TTTCGTTGGAGATTTATGATAAGA-AGGAGCTTCAGTTTTTGGGTGGCTCAGGGAACTCA 932
|||||||||||||||||||||||| || ||||||||||||||||||||||||||||||||
Sbjct 914 TTTCGTTGGAGATTTATGATAAGAGAG-AGCTTCAGTTTTTGGGTGGCTCAGGGAACTCA 972
Query 933 TCTCCGTCTTCATGTCACGAGACTTA 958
||||||||||||||||| ||||||||
Sbjct 973 TCTCCGTCTTCATGTCATGAGACTTA 998
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 46918693298
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5