BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495258 Length=959 Score E Sequences producing significant alignments: (Bits) Value AT5G51910.1 | Symbols: | TCP family transcription factor | ch... 1247 0.0 > AT5G51910.1 | Symbols: | TCP family transcription factor | chr5:21094547-21095702 REVERSE LENGTH=1156 Length=1156 Score = 1247 bits (675), Expect = 0.0 Identities = 848/926 (92%), Gaps = 34/926 (4%) Strand=Plus/Plus Query 41 TTCTAGGGTTTTGTTGTAAATGGAATCGAATCAAGAAGGCAAAGCGATACAAGAGATTGA 100 |||||||||||||| |||||||||||||||||| |||||||| |||||||||| |||||| Sbjct 99 TTCTAGGGTTTTGTGGTAAATGGAATCGAATCACGAAGGCAACGCGATACAAGTGATTGA 158 Query 101 CCAAGTAGCAACCATGACCCATCTGTCTGACCCGAATCCGAAAACCAAACCGGGTATGAT 160 ||||||| |||||||||||||||||||||||||||||||||||||||||||||| | || Sbjct 159 CCAAGTAACAACCATGACCCATCTGTCTGACCCGAATCCGAAAACCAAACCGGG--T-AT 215 Query 161 GATGCTCATGAAACAAGAAGACGGGTATTTGCAGCCGGTGATGGCTAAACCGGCTCCGAA 220 ||||||||||||||||||||||||||||||||||||||||| | |||||||||||||||| Sbjct 216 GATGCTCATGAAACAAGAAGACGGGTATTTGCAGCCGGTGAAGACTAAACCGGCTCCGAA 275 Query 221 GAGAGCGA---CTAAAGACCGTCACACGAAAGTAGAAGGACGAGGTCGGAGGATCCGAAT 277 |||| ||| ||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 276 GAGACCGACTTCTAAAGACCGTCACACGAAAGTAGAAGGACGAGGTCGGAGGATCCGAAT 335 Query 278 GCCTGCGGGTTGCGCTGCTCGGGTCTTTCAATTGACCCGTGAACTTGGTCACAAATCTGA 337 ||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| || Sbjct 336 GCCGGCGGGTTGCGCTGCTCGGGTCTTTCAATTGACCCGTGAACTTGGTCACAAATCCGA 395 Query 338 CGGAGAAACCATTCGGTGGTTATTGGAACGAGCTGAACCGGCGATAATTGAAGCAACCGG 397 ||||||||| || ||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 396 CGGAGAAACGATACGGTGGTTATTGGAACGAGCTGAACCGGCGATAATTGAAGCAACCGG 455 Query 398 AACCGGGACTGTACCGGCTATTGCTGTTTCGGTTAACGGAACTTTAAAAATACCGACGAG 457 |||||| |||||||||||||||||||| ||||||||||||||||||||||| |||||||| Sbjct 456 AACCGGAACTGTACCGGCTATTGCTGTATCGGTTAACGGAACTTTAAAAATCCCGACGAG 515 Query 458 CGCTCC-G-GTAGAGAGTAACGGCGGTGGTGACGGTGACGGTGACGGTGACCTAATGAAG 515 | |||| | || || | | ||||||| || ||||||||||||||||||||| ||| Sbjct 516 CTCTCCAGTGTTGA-A-TGACGGCGGC-----CG-TGACGGTGACGGTGACCTAATAAAG 567 Query 516 AAACGGAGGAAGAGAAACTGTACGAGTGAGTTCGTAGACGTTAATGAACATGACAGCTGT 575 |||||||||||||||||||||||||| || ||||||||||||||||| || | | ||| Sbjct 568 AAACGGAGGAAGAGAAACTGTACGAGCGATTTCGTAGACGTTAATGA-CA-G-C---TGT 621 Query 576 TACAGCTCCGTTACTTCTGGGTTAGCTCCGATAACGGCGTCAAATTACGGTGTTAATATC 635 | ||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||| Sbjct 622 CATAGCTCCGTTACTTCTGGGTTAGCTCCGATAACGGCGTCAAACTACGGCGTTAATATC 681 Query 636 ATGAACGTCAATACGCATGGGTT-GATGCCGTTTTGGCCTATGGGTATGGGTACTACGTA 694 ||||||| ||||| || ||||| | ||||||||||||||||||||||||||||| ||| Sbjct 682 CTGAACGTTAATACACAGGGGTTTG-TGCCGTTTTGGCCTATGGGTATGGGTACTGCGTT 740 Query 695 TGTTACTGGTGGGCCGAATCAAATGGGCCAAATGTGGGCTATTCCTACGGTTGCTACAGC 754 |||||||||||||||| ||||||||||||||||||||||||||||||| ||||||||||| Sbjct 741 TGTTACTGGTGGGCCGGATCAAATGGGCCAAATGTGGGCTATTCCTACCGTTGCTACAGC 800 Query 755 TTCGTTTCTGAACGTTGGTGCTACG-CCGGTGTCTAGTTACGACGTCTCAAACGCTTCAG 813 | |||||||||| |||||||||| | |||||||||||||| | ||||||||||||||| Sbjct 801 TCCGTTTCTGAATGTTGGTGCTA-GACCGGTGTCTAGTTATG---TCTCAAACGCTTCAG 856 Query 814 CCGCTGAACCGGAGATGGAAACGAGCGGTGGTGGTGGTGCGACGCAACCGCTGAGGGATT 873 |||||| |||||||||||||||||||||| || ||||||||||||||||||||| Sbjct 857 ACGCTGAGGCGGAGATGGAAACGAGCGGTGGCGGAA---CGACGCAACCGCTGAGGGATT 913 Query 874 TTTCGTTGGAGATTTATGATAAGA-AGGAGCTTCAGTTTTTGGGTGGCTCAGGGAACTCA 932 |||||||||||||||||||||||| || |||||||||||||||||||||||||||||||| Sbjct 914 TTTCGTTGGAGATTTATGATAAGAGAG-AGCTTCAGTTTTTGGGTGGCTCAGGGAACTCA 972 Query 933 TCTCCGTCTTCATGTCACGAGACTTA 958 ||||||||||||||||| |||||||| Sbjct 973 TCTCCGTCTTCATGTCATGAGACTTA 998 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 46918693298 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5