BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495261
Length=486
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51940.1 | Symbols: NRPB6A, NRPD6A, NRPE6A | RNA polymerase ... 809 0.0
AT2G04630.1 | Symbols: NRPB6B, NRPE6B | RNA polymerase Rpb6 | c... 614 3e-175
> AT5G51940.1 | Symbols: NRPB6A, NRPD6A, NRPE6A | RNA polymerase
Rpb6 | chr5:21104571-21105947 FORWARD LENGTH=694
Length=694
Score = 809 bits (438), Expect = 0.0
Identities = 470/486 (97%), Gaps = 0/486 (0%)
Strand=Plus/Plus
Query 1 AGGAGAAAGCGAAATCTAAAATCGACATTAATGGCTGACGAAGATTACAACGAAGTCGAT 60
|||||||||||||| | |||||||||||||||||||||||||||||||||||| ||||||
Sbjct 79 AGGAGAAAGCGAAACCAAAAATCGACATTAATGGCTGACGAAGATTACAACGACGTCGAT 138
Query 61 GACTTGGGATATGAGGATGAGCCAGTGGAGCCTGAGATTGAAGAAGGAGTAGAGGAAGAT 120
||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 139 GACTTGGGATATGAGGATGAGCCAGCAGAGCCTGAGATTGAAGAAGGAGTAGAGGAAGAT 198
Query 121 GCTGATATGAAGGAGAATGATGATGTCAATGGTGAGCCTCTTGAAGCTGAAGATAAGGTC 180
| ||| ||||||||||||||||||||||||||||||||| |||||||||||||||| |||
Sbjct 199 GTTGAAATGAAGGAGAATGATGATGTCAATGGTGAGCCTATTGAAGCTGAAGATAAAGTC 258
Query 181 GAAACAGAACCTGTCCAACGTCCACGTAAAACGTCAAAGTTTATGACCAAGTATGAGCGT 240
|||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 259 GAAACAGAACCTGTGCAACGTCCACGCAAAACGTCAAAGTTTATGACCAAGTATGAGCGT 318
Query 241 GCTCGTATCCTCGGCACTCGCGCTTTGCAGATTAGCATGAATGCTCCTGTCATGGTTGAG 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 319 GCTCGTATCCTCGGCACTCGCGCTTTGCAGATTAGCATGAATGCTCCTGTCATGGTTGAG 378
Query 301 CTGGAGGGTGAGACTGATCCACTTGAGATTGCGATGAAGGAGCTTAGGCAGCGGAAGATA 360
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 379 CTAGAGGGTGAGACTGATCCACTTGAGATTGCGATGAAGGAGCTTAGGCAGCGGAAGATA 438
Query 361 CCATTCACTATTAGACGATATCTACCTGATGGGAGTTTCGAGGAATGGGGAGTTGATGAA 420
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 439 CCATTCACTATTAGACGCTATCTACCTGATGGGAGTTTCGAGGAATGGGGAGTTGATGAA 498
Query 421 CTGATCGTGGAAGACTCATGGAAACGTCAAGTAGGTGGTGATTGATAATCTGACCACCGA 480
|||||||||||||||||||||||||||||||| ||||||||||||||||||||||| ||
Sbjct 499 CTGATCGTGGAAGACTCATGGAAACGTCAAGTTGGTGGTGATTGATAATCTGACCAGAGA 558
Query 481 CAAATC 486
||||||
Sbjct 559 CAAATC 564
> AT2G04630.1 | Symbols: NRPB6B, NRPE6B | RNA polymerase Rpb6 |
chr2:1618936-1620336 REVERSE LENGTH=757
Length=757
Score = 614 bits (332), Expect = 3e-175
Identities = 419/462 (91%), Gaps = 2/462 (0%)
Strand=Plus/Plus
Query 8 AGCGAAATCTAAAATCGACATTAATGGCTGACGAAGATTACAACGAAGTCGATGACTTGG 67
||||| ||| |||||||| |||||||||||||| |||||||| ||||||||||||||||
Sbjct 68 AGCGATTTCTCAAATCGACTTTAATGGCTGACGACGATTACAATGAAGTCGATGACTTGG 127
Query 68 GATATGAGGATGAGCCAGTGGAGCCTGAGATTGAAGAAGGAGTAGAGGAAGATGCTGATA 127
||||||| |||||||||| ||||||||||| ||||||||||||||||||||||||||||
Sbjct 128 GATATGAAGATGAGCCAGCAGAGCCTGAGATCGAAGAAGGAGTAGAGGAAGATGCTGATA 187
Query 128 TGAAGGAGAATGATGATGTCAATGGTGAGCCTCTT-GAAGCTGAAGATAAGGTCGAAACA 186
| |||||||| |||||||| |||| ||| ||| || ||| | ||||||||||| ||||||
Sbjct 188 TCAAGGAGAACGATGATGTTAATGTTGACCCT-TTGGAAACAGAAGATAAGGTTGAAACA 246
Query 187 GAACCTGTCCAACGTCCACGTAAAACGTCAAAGTTTATGACCAAGTATGAGCGTGCTCGT 246
|||||||| ||||| ||||||||||| || ||||||||||| |||||||| ||||| |||
Sbjct 247 GAACCTGTGCAACGCCCACGTAAAACCTCTAAGTTTATGACTAAGTATGAACGTGCACGT 306
Query 247 ATCCTCGGCACTCGCGCTTTGCAGATTAGCATGAATGCTCCTGTCATGGTTGAGCTGGAG 306
|||||||||||||| ||||||||||||||||||||||||||||| ||||||||| |||||
Sbjct 307 ATCCTCGGCACTCGTGCTTTGCAGATTAGCATGAATGCTCCTGTTATGGTTGAGTTGGAG 366
Query 307 GGTGAGACTGATCCACTTGAGATTGCGATGAAGGAGCTTAGGCAGCGGAAGATACCATTC 366
|||||||||||||||||||||||||||||||| ||||||||||| ||||||| |||||
Sbjct 367 GGTGAGACTGATCCACTTGAGATTGCGATGAAAGAGCTTAGGCAAAGGAAGATTCCATTT 426
Query 367 ACTATTAGACGATATCTACCTGATGGGAGTTTCGAGGAATGGGGAGTTGATGAACTGATC 426
|| |||||||| |||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 427 ACCATTAGACGTTATCTACCTGATATGAGTTACGAGGAATGGGGAGTTGATGAACTGATC 486
Query 427 GTGGAAGACTCATGGAAACGTCAAGTAGGTGGTGATTGATAA 468
|| |||||||| |||||||||||||| |||||||||||||||
Sbjct 487 GTCGAAGACTCGTGGAAACGTCAAGTCGGTGGTGATTGATAA 528
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23157941767
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5