BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495266
Length=1714
Score E
Sequences producing significant alignments: (Bits) Value
AT5G51980.2 | Symbols: | Transducin/WD40 repeat-like superfami... 2169 0.0
AT4G25440.1 | Symbols: ZFWD1 | zinc finger WD40 repeat protein ... 1197 0.0
> AT5G51980.2 | Symbols: | Transducin/WD40 repeat-like superfamily
protein | chr5:21113650-21116197 REVERSE LENGTH=1512
Length=1512
Score = 2169 bits (1174), Expect = 0.0
Identities = 1379/1474 (94%), Gaps = 29/1474 (2%)
Strand=Plus/Plus
Query 1 TTTTTCTCTTCATTATTATTACTTCACCACATTCACAACAATCCCAAATTTTTCTTTCTT 60
||||||||| ||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 48 TTTTTCTCTGCATTATTATCACTTCACCACATTCACAACAATCCCAAATTTTTCTTTCTC 107
Query 61 ATACTTCCATATTTTGATTACTACTTTTCAGAGATTGTTTTTAGAAAGAGAGT--GAGTC 118
|||||| ||||||||||||||||||| ||||||||| |||| ||||||||||| ||| |
Sbjct 108 ATACTTTCATATTTTGATTACTACTTCTCAGAGATTCTTTTGAGAAAGAGAGTGAGAGGC 167
Query 119 AATAAAAGAAGCTATGGATTTTGATTTGAACGGAGGAAACAAACGAGTCTTCAACAGACT 178
||||||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 168 AATAAAAAAAGCTATGGATTTCGATTTGAACGGAGGAAACAAACGAGTCTTCAACAGACT 227
Query 179 cggcggcggcggcggcggcggcggGTCAACTCGTACGATGGCACCAACGGATACAAGGCA 238
||| ||||| ||||||||||||||| |||||||||||||||||||||| ||
Sbjct 228 ---------CGGTGGCGGTGGCGGGTCAACTCGTCCGATGGCACCAACGGATACAAGACA 278
Query 239 AAAGGTTTGTTTCCACTGGCGAGCCGGGCGTTGTAATCGTTCTCCTTGTCCTTATCTACA 298
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 279 AAAGGTTTGTTTCCACTGGCGAGCCGGGCGTTGTAATCGTTCTCCTTGTCCTTATCTACA 338
Query 299 TCGAGAATTACCGGGTCCTGGTCCGGGTCAGGGTCAAGGTCCGGGTTATACAAACAAAAG 358
||| |||||||||||||||||||||||||| |||||||| ||||||||||| ||||||||
Sbjct 339 TCGGGAATTACCGGGTCCTGGTCCGGGTCAAGGTCAAGGCCCGGGTTATACGAACAAAAG 398
Query 359 GGTCGCTGAAGAATCTGGTTTTGCGGGTCCGAGTCATCGGAGAGGACCTGGGTTTAACGG 418
||||||||| ||||||||||| ||||||||||||||||||||||||||||||||||| ||
Sbjct 399 GGTCGCTGAGGAATCTGGTTTCGCGGGTCCGAGTCATCGGAGAGGACCTGGGTTTAATGG 458
Query 419 GAACTCGAATAGTAGTTGGGGGAGATTTGGTGGGAACAGAACGGTGACAAAGACTGAGAA 478
|||||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 459 GAACTCGAGTAGTAGTTGGGGGAGATTTGGTGGGAACAGAACGGTGACGAAGACTGAGAA 518
Query 479 AGTTTGCAACTTTTGGGTAGATGGGAATTGCACGTACGGTGATAAGTGTAGGTACTTGCA 538
||||||||||||||||||||||||||||||||| ||||||||||||||||| ||||||||
Sbjct 519 AGTTTGCAACTTTTGGGTAGATGGGAATTGCACATACGGTGATAAGTGTAGATACTTGCA 578
Query 539 TTGTTGGAGTAAAGGAGAGAGCTTTTCGTTGTTGACTCAGCTTGATGGTCATGAGAAGCT 598
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 579 TTGTTGGAGTAAAGGAGAGAGCTTTGCGTTGTTGACTCAGCTTGATGGTCATGAGAAGCT 638
Query 599 TGTTAGTGGTATTGCTTTGCCTTCTGGCTCTGATAAGCTTTACACTGGAAGTAAAGATGA 658
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 639 TGTTAGTGGTATTGCTTTGCCTTCTGGTTCTGATAAGCTTTACACTGGAAGTAAAGATGA 698
Query 659 GACCTTGCGTGTTTGGGATTGTGCTTCTGGACAGTGTACAGGAGTACTTAAACTTGGTGG 718
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 699 GACCTTGCGTGTTTGGGATTGTGCTTCTGGACAGTGTACAGGAGTACTCAAACTTGGTGG 758
Query 719 GGAAGTTGGCTGTGTGCTTAGCGAAGGCCCGTGGCTATTGGTTGGCATGCCAAATCTTGT 778
|||| |||||||||||||||| ||||||||||||||||| |||||||||||||| |||||
Sbjct 759 GGAAATTGGCTGTGTGCTTAGTGAAGGCCCGTGGCTATTAGTTGGCATGCCAAACCTTGT 818
Query 779 CAAGGCGTGGAATATTGAAACCAATGCAGACCAGAGTCTAAATGGACCTGTTGGCCAAGT 838
||||||||||||||||||||||||||| ||||||||||||| ||||||||||||||||||
Sbjct 819 CAAGGCGTGGAATATTGAAACCAATGCTGACCAGAGTCTAAGTGGACCTGTTGGCCAAGT 878
Query 839 ATACTCTCTCGTTGTGGGTACTGATCTTCTCTTCGCTGGTACACAGGATGGCTCTATTTT 898
|| ||||| ||||||||||||||||| ||||| ||||| ||||||||||||||||||||
Sbjct 879 CTATTCTCTTGTTGTGGGTACTGATCTGCTCTTTGCTGGAACACAGGATGGCTCTATTTT 938
Query 899 GGCATGGAGATATAATGCTGCCACTAACTGTTTCGAACCAGCGGCATCACTGACGGGCCA 958
||||||||||||||||||||||||||||||||| |||||| | || ||||||||||||||
Sbjct 939 GGCATGGAGATATAATGCTGCCACTAACTGTTTTGAACCATCAGCGTCACTGACGGGCCA 998
Query 959 TACACTTGCAGTTGTTACCTTATATGTTGGGGCAAACAGACTTTATTCTGGTTCCATGGA 1018
||||||||||||||||||||||||||||||||| |||||||||||||| |||||||||||
Sbjct 999 TACACTTGCAGTTGTTACCTTATATGTTGGGGCGAACAGACTTTATTCGGGTTCCATGGA 1058
Query 1019 CAAAACTATAAAAGTTTGGAGCCTGGATAATCTGCAGTGTATACAAACACTCACGGACCA 1078
||||||||||||||||||||| |||||||||| |||||||||||||||||||| || ||
Sbjct 1059 CAAAACTATAAAAGTTTGGAGTTTGGATAATCTACAGTGTATACAAACACTCACTGATCA 1118
Query 1079 TACATCAGTTGTGATGTCTCTCATTTGCTGGGATCAGTTTCTTTTGTCTTGTTCATTGGA 1138
| |||||||||||||||||||||||||||||||||| || ||||||||||||||||||||
Sbjct 1119 TTCATCAGTTGTGATGTCTCTCATTTGCTGGGATCAATTCCTTTTGTCTTGTTCATTGGA 1178
Query 1139 CAACACGGTTAAGATATGGGCTGCAGTTGAAGGTGGAAATTTGGAAGCGACATACACTCA 1198
||||||||||||||||||||||||| | |||||||| |||||||||| ||||| |||||
Sbjct 1179 CAACACGGTTAAGATATGGGCTGCAATCGAAGGTGGCAATTTGGAAGTAACATATACTCA 1238
Query 1199 CAAAGAAGAACATGGAGTGCTAGCTCTATGTGGTGTACATGATGCAGAAGCCAAGCCGGT 1258
||||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 1239 CAAAGAAGAACATGGAGTGCTAGCTCTATGTGGTGTACATGATGCAGAAGCCAAGCCTGT 1298
Query 1259 TTTGTTATGCTCTTGCAATGACAATACCTTGCGCCTCTACGACTTACCATC---A--TTT 1313
|||||||||| ||||||||||||| |||||||||||||||||||||||||| | |||
Sbjct 1299 TTTGTTATGCGCTTGCAATGACAACACCTTGCGCCTCTACGACTTACCATCCTTAGGTTT 1358
Query 1314 ----A---------CGGAGAGGGGGAAAATCTTTGCAAAGCAAGAGATACGGGCGATCCA 1360
| |||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 1359 GTTCATTAGATTTACGGAGAGGGGAAAAATCTTTGCAAAGCAAGAGATACGGGCGATCCA 1418
Query 1361 GATTGGTCCTGGGGGCATATTTTTCACGGGTGACGGAACTGGTCAAGTTAAAGTATGGAA 1420
||| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1419 GATAGGTCCCGGGGGCATATTTTTCACGGGTGACGGAACTGGTCAAGTTAAAGTATGGAA 1478
Query 1421 ATGGTGCACTGAACCAACCGCGGCTTTGCCTTGA 1454
||||||||||||||||||||||||||||||||||
Sbjct 1479 ATGGTGCACTGAACCAACCGCGGCTTTGCCTTGA 1512
> AT4G25440.1 | Symbols: ZFWD1 | zinc finger WD40 repeat protein
1 | chr4:13006727-13009608 REVERSE LENGTH=1799
Length=1799
Score = 1197 bits (648), Expect = 0.0
Identities = 1028/1208 (85%), Gaps = 39/1208 (3%)
Strand=Plus/Plus
Query 240 AAGGTTTGTTTCCACTGGCGAGCCGGGCGTTGTAATCGTT-CTCCTTGTCCTTATCTACA 298
||||||||||||||||||||||| || || || ||||||| | || || ||||| || ||
Sbjct 214 AAGGTTTGTTTCCACTGGCGAGCTGGCCGGTGCAATCGTTAC-CCATGCCCTTACCTGCA 272
Query 299 TCGAGAATTACCGGGTCCTGGTCCGGGT-CAGGGTCAAGGTCCGGGTTATACAAACAAAA 357
| ||||||| |||||||| ||| ||||| || || | | | | || | |||| ||||
Sbjct 273 TAGAGAATTGCCGGGTCCGGGTTCGGGTCCA--GT--A-G--CAGCTTCTTCAAATAAAA 325
Query 358 GGGTCGCTGAAGAATCTGGTTTTGCGGGTCCGAGTCATCGGAGAGGACCTGGGTTTAACG 417
|||||||||| |||||||| ||||||||||||||||| |||||||| |||||||| | ||
Sbjct 326 GGGTCGCTGATGAATCTGGGTTTGCGGGTCCGAGTCACCGGAGAGGGCCTGGGTTCAGCG 385
Query 418 GGAACTCGAATAGTAGTTGGGGGAGATTTGGTGGGAACAGAACGGTGACAAAGACTGAGA 477
|| ||| | || || ||||| |||||||||||||||||||||||||| ||||| ||||
Sbjct 386 GG-ACT-G-CTAATAACTGGGGAAGATTTGGTGGGAACAGAACGGTGACCAAGACGGAGA 442
Query 478 AAGTTTGCAACTTTTGGGTAGATGGGAATTGCACGTACGGTGATAAGTGTAGGTACTTGC 537
|| ||||||| || ||||| ||||| |||||| | || |||||||| ||||| |||||||
Sbjct 443 AACTTTGCAAATTCTGGGTTGATGGAAATTGCCCTTATGGTGATAAATGTAGATACTTGC 502
Query 538 ATTGTTGGAGTAAAGGAGAGAGCTTT-TCGTTGTTGACTCAGCTTGATGGTCATGAGAAG 596
|||| ||||| |||||||| || ||| || |||||||| |||||||| || ||| |||||
Sbjct 503 ATTGCTGGAGCAAAGGAGATAG-TTTCTCCTTGTTGACGCAGCTTGACGGGCATCAGAAG 561
Query 597 CTTGTTAGTGGTATTGCTTTGCCTTCTGGCTCTGATAAGCTTTACACTGG-AAGTAAAGA 655
|||||| ||| |||||| ||||||| || || |||||||||||||| || ||||||||
Sbjct 562 GTTGTTACTGGGATTGCTCTGCCTTCAGGATCAGATAAGCTTTACAC-GGCGAGTAAAGA 620
Query 656 TGAGACCT-TGCGTGTTTGGGATTGTGCTTCTGGACAGTGTACAGGAGTACTTAAACTTG 714
||| | || |||| | ||||||||||||||||||||||||||||| ||||| || ||||
Sbjct 621 TGA-AACTGTGCGAATATGGGATTGTGCTTCTGGACAGTGTACAGGTGTACTCAATCTTG 679
Query 715 GTGGGGAAGTTGGCTGTGTGC-TTAGCGAAGG-CCCGTGGCTATTGGTTGGCATGCCAAA 772
|||||||||||||||| | | |||| ||||| ||| |||||||||||||||||||||||
Sbjct 680 GTGGGGAAGTTGGCTGCAT-CATTAGTGAAGGTCCC-TGGCTATTGGTTGGCATGCCAAA 737
Query 773 TCTTGTCAAGGCGTGGAATATTGAAACCAATGCAGACCAGAGTCTAAATGGACCTGTTGG 832
|||||| |||||||||||||| ||| ||||||||||| ||| || ||||||||||||||
Sbjct 738 TCTTGTTAAGGCGTGGAATATCCAAAACAATGCAGACCTGAGCCTCAATGGACCTGTTGG 797
Query 833 CCAAGTATACTC-TCTCGTTGTGGGTACTGATCT-TCTCTTCGCTGGTACACAGGATGGC 890
||||||||| || | | ||||||||||||||||| | | |||||||| ||||| ||||||
Sbjct 798 CCAAGTATATTCAT-TGGTTGTGGGTACTGATCTAT-TGTTCGCTGGCACACAAGATGGC 855
Query 891 TCTATTTTGGCATGGAGATATAAT-GCTGCCACTAACTGTTTCGAACCAGCGGCATCACT 949
|||||||||| |||||||| ||| || |||||| |||||| || ||||| ||||||||
Sbjct 856 TCTATTTTGGTTTGGAGATACAATAGC-ACCACTAGCTGTTTTGATCCAGCTGCATCACT 914
Query 950 GA-CGGGCCATACACTTGCAGTTGT-TACCTTATATGTTGGGGCAAACAGACTTTATTCT 1007
| ||| || || ||||||||||| | | ||||||||||||||||||||||| ||||||
Sbjct 915 -ATTGGGTCACACGCTTGCAGTTGTCT-CTTTATATGTTGGGGCAAACAGACTCTATTCT 972
Query 1008 GGTTCCATGGACAAAACTATAAAAGTTTGGAGCCTGGATAATCTGCAGTGTATACAAACA 1067
||| |||||||||| ||||||||||||||||||||||||||||||||||||| |||||
Sbjct 973 GGTGCCATGGACAATTCTATAAAAGTTTGGAGCCTGGATAATCTGCAGTGTATTCAAACG 1032
Query 1068 CTCACGGACCATACATCAGTTGTGATGTCTCTCATTTGCTGGGATCAGTTTCTTTTGTCT 1127
|| || || |||||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 1033 CTTACAGAGCATACATCAGTTGTTATGTCTCTCATTTGCTGGGATCAGTTTCTTCTGTCA 1092
Query 1128 TGTTCATTGGACAACACGGTTAAGATATGGGCTGC-AGTTGAAGGTGGAAATTTGGAAGC 1186
|||||||||||||| || || |||||||||||||| | | ||||||||||| || ||||
Sbjct 1093 TGTTCATTGGACAATACCGTCAAGATATGGGCTGCTACT-GAAGGTGGAAACTTAGAAGT 1151
Query 1187 GACATACACTCACAAAGAAGAACATGGAGTGCTAGCTCTATGTGGTGTACATGATGCAGA 1246
|||||| ||||||||||||||| | || ||||||||||| ||||| || |||||||||||
Sbjct 1152 GACATATACTCACAAAGAAGAATACGGCGTGCTAGCTCTCTGTGGCGTCCATGATGCAGA 1211
Query 1247 AGCCAAGCCGGTTTTGTTATGCTCTTGCAATGACAATACCTTGCGCCTCTACGACTTACC 1306
||||||||| || ||| |||| || |||||||||||| | |||| |||||| || || ||
Sbjct 1212 AGCCAAGCCAGTATTGCTATGTTCGTGCAATGACAATTCGTTGCACCTCTATGATTTGCC 1271
Query 1307 ATCATTTACGGAGAGGGGGAAAATCTTT-GCAAAGCAAGAGATACGGGCGATCCAGATTG 1365
||| |||||||| ||||| ||||| ||| || ||||||||||| ||| | |||||||| |
Sbjct 1272 ATCGTTTACGGAAAGGGGCAAAAT-TTTAGCTAAGCAAGAGATTCGGTCAATCCAGATAG 1330
Query 1366 GTCCTGGGGGCATATTTTTCACGGGTGACGGAACTGGTCAAGTTAAAGTATGGAAATGGT 1425
|||| ||||||||||||||||| ||||| |||| ||||||||||||||||||||| ||||
Sbjct 1331 GTCCCGGGGGCATATTTTTCACCGGTGATGGAAGTGGTCAAGTTAAAGTATGGAAGTGGT 1390
Query 1426 GC-ACTGA 1432
| |||||
Sbjct 1391 -CTACTGA 1397
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 84738519960
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5