BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495273
Length=1341
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52030.2 | Symbols: | TraB family protein | chr5:21128129-2... 1696 0.0
> AT5G52030.2 | Symbols: | TraB family protein | chr5:21128129-21130090
FORWARD LENGTH=1427
Length=1427
Score = 1696 bits (918), Expect = 0.0
Identities = 1192/1320 (90%), Gaps = 36/1320 (3%)
Strand=Plus/Plus
Query 40 AATGAAAATCTAAACCAAT-AAAAAA-TTCAATC--tttttt-ttCACAATTATCG---- 90
|||| |||||||||||||| |||||| ||||||| |||||| |||||||||||||
Sbjct 71 AATG-AAATCTAAACCAATAAAAAAACTTCAATCTTTTTTTTCTTCACAATTATCGATCC 129
Query 91 AAATCAAGAAAATCTTGATTTGAATTCTTTCCGATGAAACTCCTTCCGAATCCACCACTA 150
||||||||| ||||||||||||||| || ||||||||||||||||||||||| |||||
Sbjct 130 AAATCAAGATTTTCTTGATTTGAATTCCTTGCGATGAAACTCCTTCCGAATCCATCACTA 189
Query 151 ACCTTCTTCTTCCCCTTCTCCACTACCTTA-ACTTCAAAACCT-TTCTTCAGACCCATCA 208
| | ||| ||||| |||| |||| || || |||||||| | | || |||||||||||||
Sbjct 190 A-C--CTTGTTCCCTTTCTTCACT-CCCTATACTTCAAAGCATATT-TTCAGACCCATCA 244
Query 209 AAGTCTCCGTCTCCGTTCAAACTCCTCCGCCGGACTTCGATTTCCGAAACGAGATCGCGT 268
|||||||||||||||||||||||||||||||||| ||||||||||| ||||| |||||||
Sbjct 245 AAGTCTCCGTCTCCGTTCAAACTCCTCCGCCGGATTTCGATTTCCGCAACGACATCGCGT 304
Query 269 CGGACTCACGCGCTGCAATTGCAAAAACTTTCCCGGAGTTGCTTGACCTCGCCGATAACG 328
|||| |||||||| ||||| || ||||||| ||||||||||||||||||||| |||||||
Sbjct 305 CGGAATCACGCGCCGCAATCGCGAAAACTTACCCGGAGTTGCTTGACCTCGCTGATAACG 364
Query 329 GGACTTTGATTCTTGTCCAGAAACAGAGTTTTGGTCCTGTTCCAGCTTGGCGCAAAGAAT 388
||||| |||||||| |||||||||||||||| |||||||||||||||||||||||||| |
Sbjct 365 GGACTCTGATTCTTCTCCAGAAACAGAGTTTCGGTCCTGTTCCAGCTTGGCGCAAAGAGT 424
Query 389 TCGTTGAGCCAGAGGCGATTTGGCTTGTGGGCACTTCTCATATCTCGCCGGAGTCTGCTT 448
|||||||||| || |||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 425 TCGTTGAGCCGGAAGCGATTTGGCTTGTGGGCACTTCTCATATCTCGCCGGAATCTGCTT 484
Query 449 CCGTCGTTGAACGCGTCGTCCGTACGGTGAAACCTGATAATGTCGCCGTCGAGCTCTGTC 508
|| |||||||||||||||||||||| ||||| ||||||||||||||||| || |||||||
Sbjct 485 CCATCGTTGAACGCGTCGTCCGTACTGTGAAGCCTGATAATGTCGCCGTTGAACTCTGTC 544
Query 509 GTAGCAGGAAAGTTCATTTCTTTATCC-AGCTGAAATTAGGAGCTGGGATTATGTACACT 567
||||||||||||| || |||||||||| | | |||||| |||||||||||||||||||||
Sbjct 545 GTAGCAGGAAAGTCCAATTCTTTATCCAAAC-GAAATTCGGAGCTGGGATTATGTACACT 603
Query 568 TCGAGTGTTGGACGAGAGGTCGACCAAAACTTAAAATCCGGTGTGTTGTCGTTGACAGGG 627
|| ||||||||| ||||||| |||||||||||||||||||| | |||||||||||| |||
Sbjct 604 TCAAGTGTTGGAGGAGAGGTTGACCAAAACTTAAAATCCGGAGAGTTGTCGTTGACCGGG 663
Query 628 ACTGGCTTTCTCGGTGCTGTTGGCCGGAGTTTAGACTTGGGAGGCCAAACTGCGTTGGCT 687
|||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 664 ACTGGCTTTCTCGGTGCTGTTGGCCGGAGTTTAGACTTGGGAGGGCAAACTGCGTTGGCA 723
Query 688 TTGCGACTTCTCTTGGCGGTTTTCTCTTCTAAGTTATCTTCTGTTGCTGACCGACCTTTC 747
||||||||||| ||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 724 TTGCGACTTCTATTGGCGGTTTTCTCTTCTAAGTTATCTTCTGTTGCTGACCGCCCTTTC 783
Query 748 GGTGATGAGTTTCGTGCAGCTCGAAAAGCGTCTGAGGAAGTTGGTGCGCAGCTAGTTCTT 807
|| |||||||||||||| ||||| ||||| ||||||||||||||||||||||| ||||||
Sbjct 784 GGGGATGAGTTTCGTGCTGCTCGGAAAGCATCTGAGGAAGTTGGTGCGCAGCTGGTTCTT 843
Query 808 GGAGACCGACCCATCGAAATAACACTCCAAAGGGCTTGGAACTCTTTGAAATGGGGAGAG 867
||||| ||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 844 GGAGATCGACCCATCGAAATAACTCTCCAAAGGGCTTGGAACTCTTTGAAATGGGGAGAG 903
Query 868 AAACTTAATCTGGTGATGGCTGTGACTCGGGCAATTACATCATCATCGGGGATATCCGCA 927
|| ||||||||||||||||||||||||||| ||| ||||| |||||||| |||||||||
Sbjct 904 AAGTTTAATCTGGTGATGGCTGTGACTCGGGTAATCACATCGTCATCGGGTATATCCGCA 963
Query 928 GCCGAGCTTAAGGAACAAGAGACCGATGAAAGCAATGGAAGTTTGCAGCTTTATGAACGG 987
|| |||||||||||||||||||||||||||| || |||||||||||||||||| ||||||
Sbjct 964 GCGGAGCTTAAGGAACAAGAGACCGATGAAAACAGTGGAAGTTTGCAGCTTTACGAACGG 1023
Query 988 CTTAGTTTCTCATACCCATCACTTCTACTGCCTCTAATACACGAAAGAGACACCTATCTA 1047
|| |||||||||||||| |||| ||| ||||||| |||||||||||||| ||||||||
Sbjct 1024 CTAAGTTTCTCATACCCGGCACTCCTAATGCCTCTTATACACGAAAGAGATACCTATCTT 1083
Query 1048 GCTTGGTCATTGAAGAGAAGTAAGGCAGTGAACGGGTGCAAAACAGTGGTGGGAGTAATC 1107
|||||||||||||||||||||||||||||||| ||||| ||||||||||||||||| |||
Sbjct 1084 GCTTGGTCATTGAAGAGAAGTAAGGCAGTGAATGGGTGTAAAACAGTGGTGGGAGTGATC 1143
Query 1108 GGAAAAGGACACATGAATGGTGTCATCTACGCATTGGTATCGGATTCCGGGGACCTCCGG 1167
|| ||||||||||||||||||||||||||||| ||||| || || || ||||| ||||||
Sbjct 1144 GGGAAAGGACACATGAATGGTGTCATCTACGCGTTGGTGTCAGACTCTGGGGATCTCCGG 1203
Query 1168 TTTA-AGGATTTAGTAGGAAGAAGAGATTCATCTGATGGT---A--G-TACTACATCGAA 1220
|||| || |||| || |||||| ||||||||| | ||||| | | ||||||||||||
Sbjct 1204 TTTAGAG-ATTTGGTGGGAAGAGGAGATTCATATAATGGTGGTACTGGTACTACATCGAA 1262
Query 1221 CGGTTGGATTCAAAAGGTTTTAAAGAGCCTCGCAAGAGACACAATCATAGGGTTCTTGTT 1280
|||||||||||||||||||||||||||| ||| |||||||||||| |||||||||||| |
Sbjct 1263 CGGTTGGATTCAAAAGGTTTTAAAGAGCTTCGTAAGAGACACAATTATAGGGTTCTTGCT 1322
Query 1281 ATGGGAGTTATATGAAGAGTATCTCAAGTTTATGATGATGAATCAAAACCTTTCATGATA 1340
|||||||||||||||| ||||||| | ||||||| | ||||||||||||||||||
Sbjct 1323 ATGGGAGTTATATGAACAGTATCT---G---ATGATGA--A-TCAAAACCTTTCATGATA 1373
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 66013716675
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5