BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495276
Length=1755
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52050.1 | Symbols: | MATE efflux family protein | chr5:211... 2514 0.0
AT5G19700.1 | Symbols: | MATE efflux family protein | chr5:666... 62.1 2e-08
> AT5G52050.1 | Symbols: | MATE efflux family protein | chr5:21138862-21140643
FORWARD LENGTH=1782
Length=1782
Score = 2514 bits (1361), Expect = 0.0
Identities = 1627/1753 (93%), Gaps = 28/1753 (2%)
Strand=Plus/Plus
Query 23 ctctctctcACAGATATTGACAAAAACAAAAAGAATGAGTCAATCAAATCGTGTCAGAGA 82
|||| || ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 38 CTCTGTCACACAGATATTGACAAAAACAAAAAGAATGAGTCAATCAAATCGTGTCAGAGA 97
Query 83 CGAAGTTACAACACCTTTACTCCAAAAAAGCTCTCATCTCAAAAATCA-----C---TC- 133
|||||||||| ||||||||||||||||| ||||||||| |||||||| | ||
Sbjct 98 CGAAGTTACATTACCTTTACTCCAAAAAACCTCTCATCTGAAAAATCACTCCTCTGTTCT 157
Query 134 CTCTGTTTTCATAAATGAAGCAATCTCAATCGGCAAAATCTCTTACCCATTGGTCCTCAC 193
|||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 158 CTCTGTTTTCCTAAATGAAGCAATCTCAATCTGCAAAATCTCTTACCCATTGGTCCTCAC 217
Query 194 AGGTCTCTTCCTCTACGTTCGCTCCTTCGTCTCTCTGTCTTTCCTCGGCGGTCTCGGGGA 253
||||||||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct 218 TGGTCTCTTCCTCTACGTTCGCTCCTTCGTCTCTCTGTCTTTCCTCGGTGGTCTCGGTGA 277
Query 254 CGCCACTCTCGCCGGTGGCTCCCTCGCCGCCGCATTCGCAAACATCACCGGATATTCTCT 313
|||||||||||||||||||||||||||||||||||| ||||||||||||||||| |||||
Sbjct 278 CGCCACTCTCGCCGGTGGCTCCCTCGCCGCCGCATTTGCAAACATCACCGGATACTCTCT 337
Query 314 TTTCTCCGGTTTAACCATGGGTGTTGAATCTATTTGCTCTCAAGCCTTTGGAGCTAGACG 373
||||||||||||||||||||| ||||| ||||| || || |||||||||||||| |||||
Sbjct 338 TTTCTCCGGTTTAACCATGGGCGTTGAGTCTATCTGTTCACAAGCCTTTGGAGCCAGACG 397
Query 374 CTATAACTACGTCCGCGCGACTATCAAGAGAGGAATCATCCTCCTCCTCGTCACTTCTCT 433
||||||||||||| |||||| | |||||||||||||||||||||| ||||||||||||||
Sbjct 398 CTATAACTACGTCTGCGCGAGTGTCAAGAGAGGAATCATCCTCCTTCTCGTCACTTCTCT 457
Query 434 CCCTGTTACACTTCTTTGGATGAATATGGAGAAGATTCTTTTAATCTTGAAACAGGACAA 493
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 458 CCCTGTTACACTTCTTTGGATGAATATGGAGAAGATTCTTCTAATCTTGAAACAGGACAA 517
Query 494 GAAGCTCGCGTCCGAAGCTCATATCTTTTTGCTTTACTCTGTTCCAGATCTTGTTGCTCA 553
|||||||||||||||||| || |||||||||||||||||||||||||||||||| |||||
Sbjct 518 GAAGCTCGCGTCCGAAGCGCACATCTTTTTGCTTTACTCTGTTCCAGATCTTGTCGCTCA 577
Query 554 ATCTTTCTTACACCCATTAAGAGTTTATCTTCGGACACAGTCAAAGACTCTTCCTTTATC 613
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 578 ATCTTTCTTACACCCATTAAGAGTTTATCTTCGGACTCAGTCAAAGACTCTTCCTTTATC 637
Query 614 AATCTGCACAGTGATCGCCAGTTTTCTTCACTTGCCAATCACGTTCTTCTTTGTAAGTTA 673
|||||| ||||||||||| |||||||||||||||||||||||||||||| ||||||||||
Sbjct 638 AATCTGTACAGTGATCGCGAGTTTTCTTCACTTGCCAATCACGTTCTTCCTTGTAAGTTA 697
Query 674 TCTTGGTTTGGGGATTAAAGGCATCGCCTTGAGTGGTGTTGTGTCTAATTTCAACCTTGT 733
|| ||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 698 CCTCGGTTTGGGGATTAAAGGAATCGCTTTGAGTGGTGTTGTGTCTAATTTCAACCTTGT 757
Query 734 CGCCTTT-CTCTTCCTCTACATTTGTTTCTTCGAAGACAAGCTAAGTATCAACGAGGAGG 792
|| |||| ||||| |||||||| |||||||||||||||||||||||| | || ||||| |
Sbjct 758 CG-CTTTCCTCTTTCTCTACATCTGTTTCTTCGAAGACAAGCTAAGTGTTAATGAGGACG 816
Query 793 AGAAGATAACAGAGGAGACAAATGAAGATAGTGTGAGAGAATGGAAGAAATTACTCTGTC 852
|||||||||||||||||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 817 AGAAGATAACAGAGGAGACATGTGAAGATAGTGTGAGAGAATGGAAGAAACTACTCTGTC 876
Query 853 TCGCGATACCAAGTTGTATATCGGTTTGTCTCGAGTGGTGGTGCTATGAGATTATGATTT 912
| ||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 877 TTGCGATACCAAGTTGTATATCGGTTTGTCTTGAGTGGTGGTGCTATGAGATTATGATTT 936
Query 913 TGCTTTGTGGGTTTCTCTTAGACCCTAAAGCAAGCGTTGCTTCAATGGGAATTCTCATCC 972
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 937 TGCTTTGTGGGTTTCTCTTAGACCCTAAAGCAAGTGTTGCTTCAATGGGAATTCTCATCC 996
Query 973 AAATCACTTCCCTTGTTTACATTTTCCCTCATTCCTTGAGTTTAGGAGTCTCCACTCGGG 1032
|||||||||| ||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 997 AAATCACTTCTCTTGTGTACATTTTCCCTCATTCCTTGAGTTTAGGAGTCTCCACCCGGG 1056
Query 1033 TCGGAAACGAGCTTGGTTCGAACCAGCCACAGAA-AGCGAGAAGAGCCGCCATTGTTGGA 1091
||||||||||||||||||| ||||||||| | || |||||||||||| ||||||||||||
Sbjct 1057 TCGGAAACGAGCTTGGTTCTAACCAGCCAAA-AAGAGCGAGAAGAGCAGCCATTGTTGGA 1115
Query 1092 CTTGGCCTCAGCATCGCCCTCGGGTTTACGGCTTTTATGTTTACTGTCTCGGTCAGAAAC 1151
||||| |||||||||||||| |||||||||||||| ||||||||||||||| ||||||
Sbjct 1116 CTTGGTCTCAGCATCGCCCTAGGGTTTACGGCTTTCGCGTTTACTGTCTCGGTTAGAAAC 1175
Query 1152 ACATGGGCAATGTTTTTCACCGATGACAAAGAAATCATGAAGCTGACTGCGATGGCTCTG 1211
|||||||| ||||||||||| ||||||||||||||||||||| ||||||| |||||||||
Sbjct 1176 ACATGGGCGATGTTTTTCACTGATGACAAAGAAATCATGAAGTTGACTGCCATGGCTCTG 1235
Query 1212 CCAATCGTTGGCCTTTGCGAGCTCGGGAACTGCCCGCAAACTACCGGATGCGGTGTTCTT 1271
||||||||||| || || |||||||||||||||||||||||||| ||||||||||||||
Sbjct 1236 CCAATCGTTGGTCTATGTGAGCTCGGGAACTGCCCGCAAACTACGGGATGCGGTGTTCTC 1295
Query 1272 AGAGGCTCCGCGAGGCCGAAGATCGGAGCTAATATTAATGGAGTGGCGTTTTATGTGGTC 1331
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |||
Sbjct 1296 AGAGGCTCCGCGAGGCCGAAGATCGGAGCTAATATTAATGGAGTGGCGTTTTACGCGGTT 1355
Query 1332 GGCATTCCGGTTGGAGCTGTTATGGCGTTTTGGTTTGGGTTCGGATTCAAGGGACTTTGG 1391
||||||||||||||||| ||| ||||||||||||||||||| ||||| ||||||||||||
Sbjct 1356 GGCATTCCGGTTGGAGCAGTTTTGGCGTTTTGGTTTGGGTTTGGATTTAAGGGACTTTGG 1415
Query 1392 CTTGGGATGCTCGCGGCGCAGATCACGTGTGTGATTGGCATGATGGCGGCGACGTGTAGG 1451
||||||||||| |||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1416 CTTGGGATGCTTGCGGCGCAGATCACGTGTGTGATTGGTATGATGGCGGCGACGTGTAGG 1475
Query 1452 ACCGACTGGGAACTGGAGGCGGAAAGGGCTAAGGAGCTCACAACAGCTGTGGATTGTGGC 1511
||||| |||||||| ||||||||||||||||||| ||||||||| || ||||||||||||
Sbjct 1476 ACCGATTGGGAACTTGAGGCGGAAAGGGCTAAGGTGCTCACAACGGCGGTGGATTGTGGC 1535
Query 1512 AGCAG---CGACGAC---AAGGAGGATGTGGAGGCTGGGATGGTTGATAATTAGGGAGGA 1565
|| || ||||||| ||||||||| |||||||||||||||||||||| |||||||||
Sbjct 1536 AGTAGTGACGACGACGCCAAGGAGGATATGGAGGCTGGGATGGTTGATAAGTAGGGAGGA 1595
Query 1566 ATGAGTCATG-GTTGGTCTTTAACaaaaaaaaaCAAAATTGACTTTCTTTTGAATTAATT 1624
|||||||||| | ||||||||||||||| |||| |||||||| |||||||||| ||
Sbjct 1596 ATGAGTCATGAGGAGGTCTTTAACAAAAA----CAAA-TTGACTTTGTTTTGAATTAGTT 1650
Query 1625 TATAACTTTTTTCTTT-ATTTAGAAGGGAATCGCTGGATGATTAATGTAAATTTTGTAGT 1683
||||||||||||||| ||| ||||| || ||| |||| |||||||||||||||||||||
Sbjct 1651 GATAACTTTTTTCTTTTATTGAGAAGAGATTCGTTGGAGGATTAATGTAAATTTTGTAGT 1710
Query 1684 GTAATGATAACACAAT-TCAGAGATTCGTAGTTGTATTCAAGGTTTATAAATTCATAAGT 1742
|||||||||||||||| | |||||||||| |||||||||||||||| ||||||||||||
Sbjct 1711 GTAATGATAACACAATCT-AGAGATTCGTCGTTGTATTCAAGGTTTTTAAATTCATAAGG 1769
Query 1743 TCAAATTTTGCTC 1755
|||||||||||||
Sbjct 1770 TCAAATTTTGCTC 1782
> AT5G19700.1 | Symbols: | MATE efflux family protein | chr5:6660821-6662347
REVERSE LENGTH=1527
Length=1527
Score = 62.1 bits (33), Expect = 2e-08
Identities = 49/56 (88%), Gaps = 4/56 (7%)
Strand=Plus/Plus
Query 1224 CTTTGCGAGCTCGGGAACTGCCCGCAAAC--TACCGGATGCGGTGTTCTTAGAGGC 1277
||||||||||||||||||||||||||||| || || ||||| ||| ||||||||
Sbjct 1162 CTTTGCGAGCTCGGGAACTGCCCGCAAACAGTA--GGTTGCGGGGTTGTTAGAGGC 1215
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86796742305
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5