BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495277
Length=468
Score E
Sequences producing significant alignments: (Bits) Value
AT1G17277.1 | Symbols: | transposable element gene | chr1:5915... 593 4e-169
AT1G78355.1 | Symbols: | transposable element gene | chr1:2947... 475 1e-133
> AT1G17277.1 | Symbols: | transposable element gene | chr1:5915644-5916212
REVERSE LENGTH=498
Length=498
Score = 593 bits (321), Expect = 4e-169
Identities = 445/499 (89%), Gaps = 32/499 (6%)
Strand=Plus/Plus
Query 1 ATGAGCTGCAATTCAAGGAATTCGAATGTTGAAAGTGGAGGCTGCAATTCAGGGATGATT 60
||||||||||| ||||||||||||| || |||||||||||||||||||||||| ||||||
Sbjct 1 ATGAGCTGCAACTCAAGGAATTCGAGTGGTGAAAGTGGAGGCTGCAATTCAGGAATGATT 60
Query 61 TCGAATGTTGAAGCTGGAGGTTTCAATAGCCGTGGGTTTCCTGTTAAGTGTAAATGTGGG 120
||||||| |||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 61 TCGAATGCTGAAGCTGGAGGTTTCAAGAGCCGTGGGTTTCCTGTTAAGTGTAAATGTGGG 120
Query 121 CTAGACGTCGTCATGTTAACATCGAGCACGGCAAAGAACCCTGGAAGGCCTTTCTTTCGG 180
|| |||||||||||||| |||||||||||||| |||||||||||||||||||||||||||
Sbjct 121 CTCGACGTCGTCATGTTTACATCGAGCACGGCTAAGAACCCTGGAAGGCCTTTCTTTCGG 180
Query 181 TGCAAAAGCTGTAAAGATGATCATTTTTTCAAATGGGTGGAGGATTGTATGTATGAAGAG 240
|||||||||||| ||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 TGCAAAAGCTGTGAAGATGATCATTTGTTCAAATGGGTGGAGGATTGTATGTATGAAGAG 240
Query 241 GTTGTAGATGCTCTACCCAAAATCTCCAGCATTGATAACGAGATTATCAATGCAAAAGCT 300
||| |||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GTTATAGATGCTCTACCCAAAATCTCCAGCATTGATAACGAGATAATCAATGCAAAAGCT 300
Query 301 GA----G--GTTGCAGTTG-AAA-TT------GC-----A-A-ACTT-AAAGGAGCT--A 336
|| | |||| | ||| ||| || || | | | || |||| || | |
Sbjct 301 GAGGTTGCTGTTGAAATTGCAAACTTAAAGGAGCTAATGATAGAGTTGAAAGAAGATGGA 360
Query 337 A--T-GA--TAGA-AGAAATTCAGAGATGGAAAAAGATGACGAAAGTGTGCTTGGTGTGC 390
| | || | | ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 ATGTGGAGCAAAAGAGAAATTCAGAGATGGAAAAAGATGACGAAAGTGTGCTTGGTGTGC 420
Query 391 CTTTGTTTTAGTGTCATTGCAATTGTGATATCAATGTTCTATAAGACAAAAAACC-AGAA 449
|||||||||||||| ||||||||||| ||||||||||||||||||| |||||||| ||||
Sbjct 421 CTTTGTTTTAGTGTGATTGCAATTGTAATATCAATGTTCTATAAGA-AAAAAACCCAGAA 479
Query 450 ATTTGTTCTTGGTTATTAG 468
|||||||||||||||||||
Sbjct 480 ATTTGTTCTTGGTTATTAG 498
> AT1G78355.1 | Symbols: | transposable element gene | chr1:29478504-29479108
REVERSE LENGTH=450
Length=450
Score = 475 bits (257), Expect = 1e-133
Identities = 279/290 (96%), Gaps = 0/290 (0%)
Strand=Plus/Plus
Query 55 ATGATTTCGAATGTTGAAGCTGGAGGTTTCAATAGCCGTGGGTTTCCTGTTAAGTGTAAA 114
|||||||| ||||||||||||||||||||||| || ||||||||||||||||||||||||
Sbjct 1 ATGATTTCAAATGTTGAAGCTGGAGGTTTCAAGAGTCGTGGGTTTCCTGTTAAGTGTAAA 60
Query 115 TGTGGGCTAGACGTCGTCATGTTAACATCGAGCACGGCAAAGAACCCTGGAAGGCCTTTC 174
|||||||| || ||||||||||| |||||||||||| | |||||||||||||||||||||
Sbjct 61 TGTGGGCTCGAAGTCGTCATGTTTACATCGAGCACGACTAAGAACCCTGGAAGGCCTTTC 120
Query 175 TTTCGGTGCAAAAGCTGTAAAGATGATCATTTTTTCAAATGGGTGGAGGATTGTATGTAT 234
|||||||||||||||||||||||||||||||| ||||||||||||||||| |||||||||
Sbjct 121 TTTCGGTGCAAAAGCTGTAAAGATGATCATTTGTTCAAATGGGTGGAGGAGTGTATGTAT 180
Query 235 GAAGAGGTTGTAGATGCTCTACCCAAAATCTCCAGCATTGATAACGAGATTATCAATGCA 294
|||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 181 GAAGAGGTTGTAGATGCTCTACCCAAAATCTCCAGCATTGATAACGAGATAATCAATGCA 240
Query 295 AAAGCTGAGGTTGCAGTTGAAATTGCAAACTTAAAGGAGCTAATGATAGA 344
||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AAAGCTGAGGTTGCAGTTGAAATTGCAAACTTAAAGGAGCTAATGATAGA 290
Score = 76.8 bits (41), Expect = 2e-13
Identities = 44/45 (98%), Gaps = 1/45 (2%)
Strand=Plus/Plus
Query 345 AGAAATTCAGAGATGGAAAAAGATGACGAAAGTGTGCTTG-GTGT 388
|||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 321 AGAAATTCAGAGATGGAAAAAGATGACGAAAGTGTGCTTGTGTGT 365
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 22253727121
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5