BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495281
Length=1162
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52100.1 | Symbols: crr1 | Dihydrodipicolinate reductase, ba... 1672 0.0
> AT5G52100.1 | Symbols: crr1 | Dihydrodipicolinate reductase,
bacterial/plant | chr5:21170145-21172346 FORWARD LENGTH=1194
Length=1194
Score = 1672 bits (905), Expect = 0.0
Identities = 988/1029 (96%), Gaps = 2/1029 (0%)
Strand=Plus/Plus
Query 1 ATGAGAAAACCATCAAGCAACAAAAAGAAACACAAAAGCTATCTCCGAGGTTAGAGCAAT 60
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGAGAAAACCATCAAGCAAAAAAAAGAAACACAAAAGCTATCTCCGAGGTTAGAGCAAT 60
Query 61 GGCAGCTGTGAACTGCCACTTCTTCAAGCTATCAAGACATCTCAAACCCTCAAGGCCTTC 120
|||||||||||||||||| |||||| |||||||| ||||||||||||| || ||||||||
Sbjct 61 GGCAGCTGTGAACTGCCATTTCTTCCAGCTATCACGACATCTCAAACCTTCTAGGCCTTC 120
Query 121 CTTTTCCTGCTCGGCTTCTCAACCTTCACAAAACAACATTAAGGTAATCATAAATGGAGC 180
||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 TTTTTCCTGCTCTGCTTCTCAACCTTCACAAAACAACATTAAGGTAATCATAAATGGAGC 180
Query 181 TGCAAAGGAAATAGGTAGAGCGGCTGTGATTGCTGTGACTAAGGCTAGGGGAATGGAGTT 240
||| |||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct 181 TGCTAAGGAAATAGGTAGAGCGGCTGTGGTGGCTGTGACTAAGGCTAGGGGAATGGAGTT 240
Query 241 AGCTGGTGCTGTCGATAACCATTTTGTTGGCGAAGATATTGGCTTGCTGTGTGACATGGA 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 241 AGCTGGTGCTGTCGATAATCATTTTGTTGGCGAAGATATTGGCTTGCTGTGTGACATGGA 300
Query 301 GGAGCCTTTAGAGATACCCGTAGTGAGTGATCTAACAATGGTGTTAGGCTCAATATCTCA 360
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 301 GGAGCCTTTAGAGATACCTGTAGTGAGTGATCTAACAATGGTGTTAGGCTCAATATCTCA 360
Query 361 GGGAAAAGAAGTCGGAGTTGTGATCGACTTTACAGACCCATCAACAGTGTATGAGAATGT 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 361 GGGAAAAGAAGTCGGAGTTGTGATCGACTTTACAGACCCATCAACAGTGTATGAGAATGT 420
Query 421 AAAACAGGCAACTGCATTTGGGATGAAGAGTGTGGTGTATGTACCTCGGATTAAGCCAGA 480
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 421 AAAACAGGCAACGGCATTTGGGATGAAGAGTGTGGTGTATGTACCTCGGATTAAGCCAGA 480
Query 481 GACAATATCTGCGTTATCTTCACTATGTGACAAGGCCACCATGGGATGCCTTGTAGCACC 540
|||| |||||||||| ||| |||||||||||||||||||||||||||| |||||||||||
Sbjct 481 GACAGTATCTGCGTTGTCTGCACTATGTGACAAGGCCACCATGGGATGTCTTGTAGCACC 540
Query 541 AACTCTATCCATAGGATCTATACTTCTCCAACAGGCTGTGATCATGGCCTCCTTCCACTA 600
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 541 AACTCTATCCATAGGATCTATACTTCTCCAACAGGCTGTGATCATGGCCTCCTTCCACTA 600
Query 601 CAACAATGTAGAACTAGTGGAGTCAAGGCCTAATGCAGCGGATTTTCCTTCTCCAGAAGC 660
|||||||||||| |||||||||||||||||||||||||||||| |||||||||| |||||
Sbjct 601 CAACAATGTAGAGCTAGTGGAGTCAAGGCCTAATGCAGCGGATCTTCCTTCTCCTGAAGC 660
Query 661 TATCCAAATTGCAAACAACATATCAAATCTTGGTCAAATCTACAACAGAGAGGATAGTTC 720
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 661 TATCCAAATTGCAAACAACATATCAAATCTTGGTCAGATCTACAACAGAGAGGATAGTTC 720
Query 721 AACTGATGTTAAGGCAAGAGGTCAAGTGATTGGAGAAGACGGGGTTCGTGTTCACAGTAT 780
|||||||||| |||||||||||||||| || |||||||||||||||||||||||||||||
Sbjct 721 AACTGATGTTCAGGCAAGAGGTCAAGTAATCGGAGAAGACGGGGTTCGTGTTCACAGTAT 780
Query 781 GGTTCTACCAGGACTACCATCGAGTACACAAGTCTACTTCTCAAGTCCAGGAGATGTTTA 840
||||||||||||||||||||| |||||||||||||||||||||||||||||||| |||||
Sbjct 781 GGTTCTACCAGGACTACCATCTAGTACACAAGTCTACTTCTCAAGTCCAGGAGACGTTTA 840
Query 841 CACTCTTAAACATGACATAATTGACGTGAGGTCTCTAATGCCTGGCCTACTCCTAGCTAT 900
|||| |||||||||||||||||||||| ||||| |||||||| |||||||||||||| ||
Sbjct 841 CACTGTTAAACATGACATAATTGACGTAAGGTCCCTAATGCCCGGCCTACTCCTAGCAAT 900
Query 901 CAGAAAGGTGGTACGCCTCAAGAATCTGGTTTATGGCCTCGAGAAATT-CTTGTAAGAAC 959
|||||||||||||||||||||||||||||||||||||||||||||||| || ||| ||||
Sbjct 901 CAGAAAGGTGGTACGCCTCAAGAATCTGGTTTATGGCCTCGAGAAATTTCT-GTAGGAAC 959
Query 960 TGAAGTGTTTCGCCAGTCAAAGATTACATTATCATAAACAGCTAATGTCATCCTGCAAGT 1019
||||||||||| |||||||||||| |||| ||||| ||||||| |||||||||||||||
Sbjct 960 TGAAGTGTTTCACCAGTCAAAGATAACATCATCATGAACAGCTCATGTCATCCTGCAAGA 1019
Query 1020 CATATGAAG 1028
|||||||||
Sbjct 1020 CATATGAAG 1028
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 57027819120
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5