BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495283
Length=1003
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52110.1 | Symbols: HCF208, CCB2 | Protein of unknown functi... 1456 0.0
> AT5G52110.1 | Symbols: HCF208, CCB2 | Protein of unknown function
(DUF2930) | chr5:21172421-21174005 REVERSE LENGTH=1112
Length=1112
Score = 1456 bits (788), Expect = 0.0
Identities = 943/1016 (93%), Gaps = 17/1016 (2%)
Strand=Plus/Plus
Query 1 AGAAATGAGTCTTCGAATTTGTAATTTCCCGTTCCATCCAAAATTCGCTCTACAACCTCG 60
||| |||||| ||| |||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 49 AGAGATGAGTATTCAAATTTGTAATTTCCCGTTCCATCCTAAATTCGCGCTACAACCTCG 108
Query 61 CGCCCAAAGGTCAACACGAATCTTCGCTCGTACAGAGAACGATTCTCCacaa-c--a-ac 116
|||||||||||||||||||||||||||||||||||||||||||||||||||| | | ||
Sbjct 109 CGCCCAAAGGTCAACACGAATCTTCGCTCGTACAGAGAACGATTCTCCACAATCAAAGAC 168
Query 117 a----a-caacaacTCAATCTCTCTGTTCTTCGCTTCACTTTCGGAATTCCTGGGCTTGA 171
| | ||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct 169 ATCTGATCAACAACTCAATCTCTCTGTTCTTCGCTTCACTTTTGGAATTCCTGGGTTTGA 228
Query 172 CGAATCTTATCTGCCGAGATGGATCGGGTACGGGTTTGGATCACTTCTTCTTCTTAACCA 231
|||||||||||| |||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 229 CGAATCTTATCTACCGAGATGGATCGGGTACGGCTTTGGATCACTTCTTCTTCTTAACCA 288
Query 232 CTTCTCAGCATCTGCTCCAATCAGTGAATCTCAAATGAGATCAGAGGCTTTGGGATTATC 291
||||||||| |||||||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 289 CTTCTCAGCTTCTGCTCCAATCAGTGAATCTCAAATGAGATCAGAGGCTTTGGGTTTATC 348
Query 292 ACTTGCTGCGTTTTCAATAGCTTTACCTTACATTGGTAAATTCCTTAAGGGCTCTGTAGT 351
||| ||||| |||||||||||||||||||||||||| |||||||||||||| ||||||||
Sbjct 349 ACTAGCTGCATTTTCAATAGCTTTACCTTACATTGGAAAATTCCTTAAGGGTTCTGTAGT 408
Query 352 GGAGCAGAGAACTCTACCTGAAGAAGGAGAGCAGATTTTTGTGATATCATCAAATATTGG 411
||||||||||| ||| |||||||||||||||||| |||||||||||||||||||||||||
Sbjct 409 GGAGCAGAGAAGTCTCCCTGAAGAAGGAGAGCAGGTTTTTGTGATATCATCAAATATTGG 468
Query 412 AGATTCTTTGAAGGAGGATTTAGCGTGGGCAACGTATGTTTTGTTGAGGAATACAAGTAC 471
|||||||||||| ||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 469 AGATTCTTTGAAAGAGGATTTAGCATGGGCAACGTATGTTTTGTTGAGGAATACAAGTAC 528
Query 472 TATAGCTGTGTTGATATCGGTTCAAGGTGAGCTTTGTGTTCGCGGGTACTGGAATTGTCC 531
||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||
Sbjct 529 TATAGCTGTGTTGATATCGGTTCAAGGCGAGCTTTGTGTTCGCGGGTACTGGAATTGTCC 588
Query 532 AGATCAGATGTCAAAGGCTCAACTACATGATTGGTTTACGAAAAAAGTGGATAAGATTGG 591
|||||| ||||||||||||||||| ||||||||||||| ||||||||||||| |||||||
Sbjct 589 AGATCAAATGTCAAAGGCTCAACTTCATGATTGGTTTAAGAAAAAAGTGGATGAGATTGG 648
Query 592 CTTGGCTGATGTGAAGGACACCCTTTACTTCCCTCAATATGCAGGTTCTGCACAATCTTG 651
|||||||||||||||||| |||||||| |||||||| |||||||||||||||| |||||
Sbjct 649 CTTGGCTGATGTGAAGGAGACCCTTTATTTCCCTCAGTATGCAGGTTCTGCACTATCTTT 708
Query 652 GGATATTCTTCCCGATGGGACGCGTTCTCTTTTTGTGCAACCTCTCGTACAAAATATAAA 711
|||||| ||||| ||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct 709 GGATATACTTCCTGATGGGACGCGTTCTCTTTTTGTGCAACCTCTCGTACAAAATACAAA 768
Query 712 TGAACCGCAGAAAATGGATGGGTTTTTGCTGGTGGCTTCTACTGCTGGATATGCATATAG 771
||||||||||||| || ||||||||||||||||||| |||||||||||||||||||||||
Sbjct 769 TGAACCGCAGAAAGTGAATGGGTTTTTGCTGGTGGCCTCTACTGCTGGATATGCATATAG 828
Query 772 CGATAAAGATAGAGCCTGGATTGGAGCTATGGCTGAGAAATTCAGAGGTTAGATTGTTCC 831
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 829 CGATAAAGATAGAGCCTGGATTGGAGCTATGGCTGAGAAATTCAGAGGTTAGATTGTTCC 888
Query 832 CATGGATCAAAG-ACTTCTTGCTTCCATTTT-TTCTCTTTTTGTGGGTTTCAGTT-AAGT 888
||||||| |||| | || |||||| ||||| |||| |||| ||||| ||| ||| ||||
Sbjct 889 CATGGATTAAAGGATTTGTTGCTT--ATTTTGTTCTGTTTTGGTGGGCTTC-GTTGAAGT 945
Query 889 TGAAACTGTGCAGTCACAACTTTGACAGACTTT-CATCGCAGTATTTATGCTTCGCCACT 947
| ||| ||||||||| ||||||||||||||||| |||| ||| |||||||||| | ||
Sbjct 946 TAAAATTGTGCAGTCTCAACTTTGACAGACTTTTCATCTTGGTAATTATGCTTCGTCGCT 1005
Query 948 GTTCCATCTGAATATGGGTGGACTTTGCACATTTTTATAGAATGTTAATTGGACCA 1003
|||||||||||||||||| ||| |||| |||||| |||||| |||||||||||||
Sbjct 1006 GTTCCATCTGAATATGGGAGGAATTTGTACATTTC-ATAGAACGTTAATTGGACCA 1060
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49128995766
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5