BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495284
Length=884
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52140.1 | Symbols: | RING/U-box superfamily protein | chr5... 1218 0.0
AT1G60360.1 | Symbols: | RING/U-box superfamily protein | chr1... 54.7 2e-06
> AT5G52140.1 | Symbols: | RING/U-box superfamily protein | chr5:21184522-21186872
REVERSE LENGTH=887
Length=887
Score = 1218 bits (659), Expect = 0.0
Identities = 812/887 (92%), Gaps = 6/887 (1%)
Strand=Plus/Plus
Query 1 ATGTCTCGGCTTGTAAACCAGTCGTCTCTCGATGAAAATATTGCAATCTATTTACAATAT 60
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||| |
Sbjct 1 ATGTCTCGGCTTGTAAACCAGTCGTCTGTCGATGAAAATATTGCAGTCTATTTACAAAAC 60
Query 61 GAGTTATCAGAACTGACGGTTAATGATTATGTTATTGGTCGGGAGATTCAACAACAATAT 120
||||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||
Sbjct 61 GAGTTATCAGAACTGACGGTTAATGATTATGCTATTGGTCGGGAGATACAACAACAATAT 120
Query 121 CAAAATAAATTTATATGTAATGATGCTGCTATTGCTTTAGAGATGCAGCAAGAAGAAGTT 180
|||||||||| |||||||| ||||||||||||||||| ||||| ||| |||||||||
Sbjct 121 CAAAATAAATCGATATGTAACGATGCTGCTATTGCTTTGGAGATTCAGAAAGAAGAAGAA 180
Query 181 GCTTGTGTGCACTCTTGCCTACATGATGATGAAGGATTGGCAAGAACGTTGCAAGACTTG 240
|||||||| ||||||||| ||||||| |||||||||||||||||||||||||||||||||
Sbjct 181 GCTTGTGTACACTCTTGCTTACATGACGATGAAGGATTGGCAAGAACGTTGCAAGACTTG 240
Query 241 GAGGGTAATCTGCAGCCCTCTCTAAGCGATGATGAAAAACTTGCTAGATATTTGCAAGAA 300
|||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 241 GAGGCTAATCTGCAGCCCTCTCTAAGCGATGATGAAAAACTTGCAAGATATTTGCAAGAA 300
Query 301 CAAGATGAATCGGCAAATAATACGGACGATGATATTCAAGAAACCCATCACCATCATTAC 360
|| ||||||| ||||||||||||||| |||||||| |||||||| ||||||||||| |||
Sbjct 301 CATGATGAATTGGCAAATAATACGGAAGATGATATCCAAGAAACACATCACCATCAGTAC 360
Query 361 CAACCCATGCAAGTGAATCGTTCATACATACCTCAACGTGATGCTCCATCGACTAGTAGA 420
|| |||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 361 CACCCCATGCAAGTGAATCGTTCATACATACCTCAACGTGATGCTCCATCGTCTAGTAGA 420
Query 421 GCCTTTTTTGACTATGACGATGGTGAGAACTTCTCGGGCCATCATACCCATATTCGTAGT 480
||| ||||| |||||||||||||||||||||||||||| | | |||| |||| || ||||
Sbjct 421 GCCATTTTTCACTATGACGATGGTGAGAACTTCTCGGGTCGTTATACGCATACTCATAGT 480
Query 481 CCTTCTAAT-ATCTCCCACAATCCTCCAGATAATGAGAACATTGATCCCGCAAGTATGAC 539
||||| || || |||||||||||| | ||| ||||||||| |||||||| || ||||||
Sbjct 481 CCTTC-AAGCATTTCCCACAATCCTACTGATGATGAGAACAATGATCCCGAAAATATGAC 539
Query 540 GTATGAGGAATTATCTGAATTAGAAGACTCGATTGGAGATGTCAGTAAAGGATTATCGCA 599
||||||||||||| |||| |||| ||||||| ||||||||||| ||||||||||||||||
Sbjct 540 GTATGAGGAATTAACTGAGTTAGGAGACTCGGTTGGAGATGTCGGTAAAGGATTATCGCA 599
Query 600 AGAGAGAATCTCTCGATTATCG-ACTCATAAGTATGGTACTAAAACCAAAACTTGGTCCT 658
|||||| |||||| |||| || ||||||||||||||||||||||||||| |||||| ||
Sbjct 600 AGAGAGGATCTCTAGATTG-CGGACTCATAAGTATGGTACTAAAACCAAATCTTGGTACT 658
Query 659 GTTGGCTTAAGAAAAAGAAGTTTGTTGCCGATGATTCTCAGTGTTCGATATG-CTTAGTG 717
||| || || |||||||||||||||||||||||||||||||||||||||||| || | ||
Sbjct 659 GTTTGCATATGAAAAAGAAGTTTGTTGCCGATGATTCTCAGTGTTCGATATGTCTAA-TG 717
Query 718 GACTATGCGGAGGGAGATAAGATCACAACTTTGCCATGTAAACATATTTACCATAAAGAT 777
|| ||||| | ||||||||||| ||||||||||||||||||||||| || |||||||||
Sbjct 718 GAGTATGCAAAAGGAGATAAGATTACAACTTTGCCATGTAAACATATCTATCATAAAGAT 777
Query 778 TGCATTTCACAATGGCTGAAACAAAACAAGGTATGCTGCGTTTGCAAAGCCGAGGTTTAT 837
||||||||||||||||||||||||||||||||||||||| ||||||| ||||||||||||
Sbjct 778 TGCATTTCACAATGGCTGAAACAAAACAAGGTATGCTGCATTTGCAAGGCCGAGGTTTAT 837
Query 838 CCATAATACTAAATTTCGTCGGACCAACAATCTATAATGCTCGGTTT 884
|||||||||||||| ||||||||||||| |||||||||| |||||||
Sbjct 838 CCATAATACTAAATCTCGTCGGACCAACGATCTATAATGTTCGGTTT 884
> AT1G60360.1 | Symbols: | RING/U-box superfamily protein | chr1:22242748-22243731
REVERSE LENGTH=984
Length=984
Score = 54.7 bits (29), Expect = 2e-06
Identities = 29/29 (100%), Gaps = 0/29 (0%)
Strand=Plus/Plus
Query 751 CCATGTAAACATATTTACCATAAAGATTG 779
|||||||||||||||||||||||||||||
Sbjct 721 CCATGTAAACATATTTACCATAAAGATTG 749
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 43151132273
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5