BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495285
Length=611
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52150.1 | Symbols: | RING/U-box superfamily protein | chr5... 854 0.0
> AT5G52150.1 | Symbols: | RING/U-box superfamily protein | chr5:21189988-21191303
REVERSE LENGTH=603
Length=603
Score = 854 bits (462), Expect = 0.0
Identities = 567/615 (92%), Gaps = 17/615 (3%)
Strand=Plus/Plus
Query 1 ATGTCTCAATCCT-TAAATCAGGCGGCCATTGATGAAGCAATTGCACTAGGAATAGATTT 59
|||||||||| || ||||||||| ||||||||||||||||||||| | |||||||
Sbjct 1 ATGTCTCAAT-CTCTAAATCAGGATGCCATTGATGAAGCAATTGCA-T-----TAGATTT 53
Query 60 GCAGTTTGATGATTTATACCTAACGATTAACGACCCGGATGATATCGCATTGAAAATCAA 119
||||||||||||||||||||||||||||||||||| | | |||||||||||||||||||
Sbjct 54 GCAGTTTGATGATTTATACCTAACGATTAACGACCAG--T-ATATCGCATTGAAAATCAA 110
Query 120 ACAAAAAGAAGAAGCGCTTTCCATACAAGCTGATGAAGAATATGCAAAAATGTTGCAATT 179
|||||| ||||||||| | |||||||||||||||||||| ||||||||||||||||||||
Sbjct 111 ACAAAACGAAGAAGCGATGTCCATACAAGCTGATGAAGATTATGCAAAAATGTTGCAATT 170
Query 180 ACAGGAAGATGAAGAATTGGCAAAAAATTTGCATGCCATGGAAGAAAACCCTCCAAACAT 239
|||||||||||||||| ||||||| |||||||||||||||||||| ||||| |||||
Sbjct 171 ACAGGAAGATGAAGAAACAGCAAAAACCTTGCATGCCATGGAAGAAAATCCTCCGAACAT 230
Query 240 TCCTCAG-CCTGATGTTCCTTCGACTAGTAGAGGA-ACTAGTGGCCTTAACGATGGTGAG 297
||||||| || |||||||||||||||||||| ||| || ||||||||||||||||||||
Sbjct 231 TCCTCAGTCC-GATGTTCCTTCGACTAGTAG-GGACACAAGTGGCCTTAACGATGGTGAT 288
Query 298 AGGCCTCAGGATCAGCCTACCCTTGTTGCTAATCAAACTGCTATTGAGAACAACGATCCC 357
|||| ||||||||||||||||||||||| ||| ||||||||||||||||||||| |||||
Sbjct 289 AGGCGTCAGGATCAGCCTACCCTTGTTGTTAACCAAACTGCTATTGAGAACAACAATCCC 348
Query 358 GAAAATGGGTTAGGAGAATCAACCGAGGAAGTCAGTAAAGAAGGATTACCAGAAAATATA 417
| |||||||| ||||||||||||||||| ||||| |||||||||||||||||||||||||
Sbjct 349 GGAAATGGGTCAGGAGAATCAACCGAGGTAGTCAATAAAGAAGGATTACCAGAAAATATA 408
Query 418 ATCTC-GGGATTACCAACTCAAAAGTACAGTCGCAAAACTTGGTGGTGTTCAAAGAAAAC 476
||||| ||| |||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 409 ATCTCCGGG-TTACCAACTCAAAAGTACAGTCGCAAAACTTGGTGGTGGTCAAAGAAAAC 467
Query 477 TTTTGTTCCCGATAAAAAAGAGTGTTCCATATGTATAGTCGACTATGAGAAGGGAGATAA 536
||||||||| |||| |||||||||||| |||||||||| |||||||||||||||||||||
Sbjct 468 TTTTGTTCCTGATAGAAAAGAGTGTTCTATATGTATAGCCGACTATGAGAAGGGAGATAA 527
Query 537 GATAACTATCTTACCATGTAAACATGCCTTCCATAAGGATTGCATTTCAAATTGGTTAAA 596
|||||| ||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 528 GATAACCATCTTACCATGTAAACATGCCTTCCATAAGGATTGCATTGCAAATTGGTTAAA 587
Query 597 AGAAAACAAGGTATG 611
|||||||||||||||
Sbjct 588 AGAAAACAAGGTATG 602
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 29437210142
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5