BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495287
Length=754
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52190.1 | Symbols: | Sugar isomerase (SIS) family protein ... 1027 0.0
> AT5G52190.1 | Symbols: | Sugar isomerase (SIS) family protein
| chr5:21201730-21202543 REVERSE LENGTH=814
Length=814
Score = 1027 bits (556), Expect = 0.0
Identities = 697/764 (91%), Gaps = 13/764 (2%)
Strand=Plus/Plus
Query 1 TTTGTAAATGTGGTCCAAATTGCACGATAT----T-AAGATGAT-A-CATAAGCTGAATT 53
|||||||| |||||||||| |||||||||| | | |||||| | ||||||||||||
Sbjct 30 TTTGTAAACGTGGTCCAAAATGCACGATATAAGATGATGATGATGATGATAAGCTGAATT 89
Query 54 ATTCAACATCAATGGTGAACGAGAAAGCTCAAGAAATGGCGAATCTATCTTCCCAAATCT 113
||||||||||||||| |||||||||||||||||||||||||||||||||||| |||||||
Sbjct 90 ATTCAACATCAATGGCGAACGAGAAAGCTCAAGAAATGGCGAATCTATCTTCTCAAATCT 149
Query 114 GTAACCAAATCTCCTCCGTCTTCACCAAACCAACCTCTCCATATCCACCACCACTCGATC 173
| ||||||||||| || |||||||| ||||||||||| |||||||||||||| |||||||
Sbjct 150 GCAACCAAATCTCATCTGTCTTCACAAAACCAACCTCACCATATCCACCACCGCTCGATC 209
Query 174 TCCTAGTAACAGAACTCGCTGCTATCTCCCGCAACCGCAACAACTCTCGTATCTTCCTCT 233
||||||||||||| || | || |||||||||||||||||||||||||||||||||||||
Sbjct 210 TCCTAGTAACAGAGCTTACCGCAATCTCCCGCAACCGCAACAACTCTCGTATCTTCCTCT 269
Query 234 ACGGTGTCGGACGCGAAGGTCTCATGTTAAAAGCCTTCGCGATGCGTCTCTTCCACCTTG 293
||||||| |||||||||||||| ||| ||||||||||||||||||||||||||||| |||
Sbjct 270 ACGGTGTTGGACGCGAAGGTCTAATGCTAAAAGCCTTCGCGATGCGTCTCTTCCACTTTG 329
Query 294 GTCTCTCTACTCACTTAGTCTTCGACATGACAACACCACCAATCTCATCTTCCGATCTCC 353
||||| | ||||||||||||||||||||||||||||| |||||||||||||| ||||||
Sbjct 330 GTCTCCCCACTCACTTAGTCTTCGACATGACAACACCTCCAATCTCATCTTCTGATCTCT 389
Query 354 TAATCGCTTCAGCTGGTCCTGGAGGATTCTCAACCGTCGATGCGATTTGTTCTGTAGCTA 413
|||||||||||||||||||||||||||||||||||||||||||| |||| ||||||||||
Sbjct 390 TAATCGCTTCAGCTGGTCCTGGAGGATTCTCAACCGTCGATGCGCTTTGCTCTGTAGCTA 449
Query 414 AATCCAACGGTGCTAAGGTTATACTCATCACTGCGGAGCCGGAGATAGGTTCTTGTGTGA 473
|||| |||||||||||||||||||| || ||||| ||||| | |||||||||||||||||
Sbjct 450 AATCGAACGGTGCTAAGGTTATACTTATTACTGCAGAGCCAGCGATAGGTTCTTGTGTGA 509
Query 474 AACATGCGACGGATGTGTGTTATGTTCCTGCTCAGACTATGGCGAGTGATAACGGTGGTG 533
||||||| |||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 510 AACATGCAACGGATGTCTGTTATGTACCTGCTCAGACTATGGCGAGTGATAACGGTGGTG 569
Query 534 ATGCA-GCGGCGGAGATGGGAGAGAGACCG-TTGTTGCCGATGGGAAGTGTATATGAAGG 591
|| | ||| ||| |||||||||||| || || ||||||||||| ||||||||||||||
Sbjct 570 GTG-ATTCGGTGGAAATGGGAGAGAGA-CGTTTATTGCCGATGGGGAGTGTATATGAAGG 627
Query 592 AGCTTTGTTTGTGTTGTTTGAGATGGTTGTTTACAAGTTGGGTGACGTTTTGGGTGAGTC 651
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct 628 AGCTTTGTTTGTGTTGTTTGAGATGGTTGTTTACAAGTTGGGTGAGGTTTTGGGTGAGTC 687
Query 652 TTCTGAGTCGGTACGCGCTCGTCACACTAATCTTGAGTGACGTAAGGAATTT-GATTAGC 710
||||||||||||||| |||||||| ||||||||||||||||||| | ||||| |||||||
Sbjct 688 TTCTGAGTCGGTACGTGCTCGTCATACTAATCTTGAGTGACGTA-GCAATTTTGATTAGC 746
Query 711 ATGTGGTGTTGTTTTGGTGTTTTGGTTGAGAAACAGTTGCTGTT 754
||||| |||||||||||| ||| | |||||||| | |||||||
Sbjct 747 ATGTGCTGTTGTTTTGGTATTTCGCTTGAGAAATGGCTGCTGTT 790
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36620693163
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5