BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495289
Length=1018
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52210.1 | Symbols: ATARLB1, ATGB1, GB1 | GTP-binding protei... 1325 0.0
> AT5G52210.1 | Symbols: ATARLB1, ATGB1, GB1 | GTP-binding protein
1 | chr5:21204991-21207097 FORWARD LENGTH=992
Length=992
Score = 1325 bits (717), Expect = 0.0
Identities = 859/923 (93%), Gaps = 28/923 (3%)
Strand=Plus/Plus
Query 122 ACAAGGGAAGATCAAAGTAATTAAAGAAGCTGAAGTAGGAGGAAGTGATGTTTTCTCTTA 181
||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||||
Sbjct 71 ACAAGGGAAGATCAAAGTAATTAAATAAGCTGAAGTAAGAGGAAGTGATGTTTTCTCTTA 130
Query 182 TGTCTGGACTATGGAGTTACATGTTTAGCAAGACTGAGTTTCATGTGCTTATTCTTGGTA 241
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 131 TGTCTGGACTATGGAGTTACATGTTTAGCAAGACTGAGTTTAATGTGCTTATTCTTGGTA 190
Query 242 TCGACAAAGCTGGGAAGACGACATTTTTGGAGAAATTGAAGACGATATACTCAATCTCGG 301
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 191 TCGACAAAGCTGGGAAGACGACATTTTTGGAGAAACTGAAGACGATATACTCAATCTCGG 250
Query 302 AAGGTCTTCCTCATGATCGAATTGTTCCTACTGTGGGG-TTAAATATTGGTCGCATTGAA 360
|||||||||||||||||||||||||||||||||||||| || ||||||||||||||||||
Sbjct 251 AAGGTCTTCCTCATGATCGAATTGTTCCTACTGTGGGGCTT-AATATTGGTCGCATTGAA 309
Query 361 GTCTCCAATGCTAAAATTGTGTTTTGGGACCTGGGAGGTCAGCCTGGTTTGCGGTCAATT 420
||||||||||||||||||||||| ||||| |||||||||||||||||||||||||| |||
Sbjct 310 GTCTCCAATGCTAAAATTGTGTTCTGGGATCTGGGAGGTCAGCCTGGTTTGCGGTCTATT 369
Query 421 TGGGAGAAATACTATGAAGAAGCACACGCGTTGATATATTTGATTGATGCAGCTTGCCCA 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 370 TGGGAGAAATACTATGAAGAAGCACACGCGTTGATATATTTGATTGATGCAGCTTGCCCA 429
Query 481 ACCCGCTTTGAAGATTCAAAATCTGCTTTAGAAAAAGCCCTGCGGCATGAGGATTTGCAA 540
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 430 ACCCGCTTTGAAGATTCTAAATCTGCTTTAGAAAAAGCCCTGCGGCATGAGGATTTGCAA 489
Query 541 GGAGCCCCGCTTTTGATTTTGGCAAACAAGCAAGACCTCCCAAATGCTGTATCGGCTGAA 600
|||||||| ||||| || ||||||||||||||||||||| |||||||||||||||||||
Sbjct 490 GGAGCCCCTCTTTTAATATTGGCAAACAAGCAAGACCTCACAAATGCTGTATCGGCTGAG 549
Query 601 GAACTGGATCGATACCTTGATCTAAAGAAATTGGATGAAAGGGTGTACATGTTTGAAGCA 660
|||||||| |||||||||||| ||||||||||||||||||| ||||||||||||||||||
Sbjct 550 GAACTGGACCGATACCTTGATTTAAAGAAATTGGATGAAAGAGTGTACATGTTTGAAGCA 609
Query 661 GTTTCTGGATATGATGGGCGAGGAATCAAAGAAAGTATAGAATGGCTAGTCGGCGTGATG 720
||||||||||||||||||||||||||||||||||||||||||||||| || || || |||
Sbjct 610 GTTTCTGGATATGATGGGCGAGGAATCAAAGAAAGTATAGAATGGCTGGTTGGAGTAATG 669
Query 721 GAGAGAAGCAAAAGAACCGAAACATTAAGAGCCCGTGCAGGGTACACTCCTGTGCCTAAT 780
|||| |||||| ||||||||| |||||||||||||||||||||||||||||||||| |||
Sbjct 670 GAGAAAAGCAAGAGAACCGAATCATTAAGAGCCCGTGCAGGGTACACTCCTGTGCCAAAT 729
Query 781 TCGTAGACACGA-AAAGGACTCGCACACTCAACTCTCCAATCAACTGGTTTCCTTTGGA- 838
|| ||||||||| |||||||||||| ||||||||||||| ||||||||||||||||| |
Sbjct 730 TCATAGACACGAGAAAGGACTCGCAAACTCAACTCTCCAGTCAACTGGTTTCCTTTGAAA 789
Query 839 TACATTTGTAGATAA-AACAGACCTGAATCTTTGCATTGTTTTGGCTCAGCATCAAATTC 897
||||||||||||||| |||||||| ||||||||||| |||||||| ||||||||||||
Sbjct 790 TACATTTGTAGATAAGAACAGACCACAATCTTTGCATCATTTTGGCT-AGCATCAAATTC 848
Query 898 ACATGATGAGTAGGAACTAGTAAA-TC-TT----C-AC-T--A-ATGTT-A-T---G--A 939
||||||||||||||||||||||| || || | || | | ||||| | | | |
Sbjct 849 ACATGATGAGTAGGAACTAGTAATCTCCTTATTGCCACCTTCATATGTTTACTAATGTTA 908
Query 940 T--T-CAATTGAGATTTTGTGGTCATGATTGCATTTAGTTACTGCAAACC-AATAATGTA 995
| | ||||||||| |||||||| |||||||||||||||||||||||||| |||||||||
Sbjct 909 TAATTCAATTGAGACTTTGTGGTGATGATTGCATTTAGTTACTGCAAACCCAATAATGTA 968
Query 996 ATCAAGTTTCTTGATTTGCAAAC 1018
|||||||||||| ||||||||||
Sbjct 969 ATCAAGTTTCTTCATTTGCAAAC 991
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49882507971
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5