BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495292
Length=2406
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52230.1 | Symbols: MBD13 | methyl-CPG-binding domain protei... 1615 0.0
> AT5G52230.1 | Symbols: MBD13 | methyl-CPG-binding domain protein
13 | chr5:21207888-21211809 REVERSE LENGTH=2625
Length=2625
Score = 1615 bits (874), Expect = 0.0
Identities = 1265/1443 (88%), Gaps = 70/1443 (5%)
Strand=Plus/Plus
Query 1005 TGAACCAACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAATAGTGCCTCCTGATGA 1064
|||||| |||| |||||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 1189 TGAACCGACGCTTGAACTGAAGACAAGAACCAAAGTTCAACGAATATTACCTCCTGATGA 1248
Query 1065 TGAACCAACGCCTGATCT---G--AAG-A-C-AAG---AACCAA-AGT---T-C-AACGA 1107
||||| ||||| || || | ||| | | ||| ||| || ||| | | | ||
Sbjct 1249 TGAACTGACGCCCGAACTGAAGTCAAGAACCAAAGTTCAACGAATAGTACCTCCTGATGA 1308
Query 1108 -GTAGT-ACCTCCTG-A--T--GATGAG--CC---G-A-AACGAATATTACCTCCTGATG 1153
| | | | | |||| | | || ||| || | | ||| || | ||||||||||||
Sbjct 1309 TGAACTGA-CGCCTGAATTTAAGACGAGAACCAAAGTACAACAAAGAATACCTCCTGATG 1367
Query 1154 ATGGCACAGCTGGAAAGTGCAAGCAACCTGTGAATCCTGTTGCTACCAGCGGATTGGAAA 1213
|||||| ||| ||||||||||||||||||||||||| |||| ||||||||||| | |||
Sbjct 1368 ATGGCAGAGCCGGAAAGTGCAAGCAACCTGTGAATCATGTTACTACCAGCGGA-TCAAAA 1426
Query 1214 AA-ATGGATATACC-CTTCAACAAGGAAGTAGCCAAAAGCTATAATGAAC-ATCGCTCTC 1270
|| | ||| ||||| | ||||||||||||||||| |||||| |||||||| ||| |||||
Sbjct 1427 AAGACGGAAATACCGC-TCAACAAGGAAGTAGCCCAAAGCTGTAATGAACAATC-CTCTC 1484
Query 1271 AGAAACCATATGCTGTTGCTG---CAAGCAACAATCGTGTGAGTCCAGAAAT-GGTAGTG 1326
|||||||| |||||| ||||| |||||||||||||||||||| ||| | | || ||||
Sbjct 1485 AGAAACCACATGCTGCTGCTGCAACAAGCAACAATCGTGTGAGTGCAG-ATTCGGCAGTG 1543
Query 1327 GGAACACAAAATATCGGTAAACCAGTAGGCAGAAAGCCTTCTTCAGACAAGAAGACAATG 1386
|||| |||||||||||||||| |||||||||| ||||||||| |||||||||||| ||
Sbjct 1544 GGAATACAAAATATCGGTAAAGCAGTAGGCAGGAAGCCTTCTAAAGACAAGAAGACGCTG 1603
Query 1387 AAAACGCCAATGATAGTATATGAACTGAATCCAGTTTTTCATCTTGAGGGTTACAAGCAG 1446
||| | ||| ||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct 1604 AAATCACCACTGATAGTATATGAACTGAATCCAGTTTTTCATCTTGACGGTTACAAGCAG 1663
Query 1447 AAGGAAGAAAGGTCGCCCGTGTCACCGTTGTCTTGCCAAACTTCTGCAACAAAGTGTGAG 1506
|||||||||| ||| || ||||||||||||||||||||||||||||||||||||||||||
Sbjct 1664 AAGGAAGAAATGTCACCTGTGTCACCGTTGTCTTGCCAAACTTCTGCAACAAAGTGTGAG 1723
Query 1507 AAGACAGCAGCAGGCAAAAGATTGGGACGGTCTAGTCCAAAGGCTAAACTTACTACCAGT 1566
||||||||||||||||||||| ||||| ||||||| ||||||||||| ||||||||||||
Sbjct 1724 AAGACAGCAGCAGGCAAAAGAGTGGGAAGGTCTAGCCCAAAGGCTAACCTTACTACCAGT 1783
Query 1567 GTGAAACCAACTCAGATCTCGCCTTTGAGATCATCAAATAAAGGAAAGCATCCGCATCCT 1626
|||||||||||||||||||||||| |||||||| |||||||||||||||| || ||||||
Sbjct 1784 GTGAAACCAACTCAGATCTCGCCTCTGAGATCACCAAATAAAGGAAAGCAACCACATCCT 1843
Query 1627 TCTGATAGTGGTAATGCTATTCAAACGAGAAATAAATTAGGTAACGAGTTAT-CTAACTC 1685
||||| |||||| ||| ||||||| |||||||||| ||| ||| |||| || |||||||
Sbjct 1844 TCTGACAGTGGTTCTGCCATTCAAAGGAGAAATAAACTAGCTAATGAGT-ATTCTAACTC 1902
Query 1686 ATCTGTTGTAAAAGGCACATGCTCAGAAGTGATGGAGAAGAATACCAACAGCTTCTCATC 1745
||| ||||||| ||||||||||||||||||||||||||||| ||||||||||||||| ||
Sbjct 1903 ATCCGTTGTAAGAGGCACATGCTCAGAAGTGATGGAGAAGAGTACCAACAGCTTCTCCTC 1962
Query 1746 CGCATTTGACTCTACTCTTGCAGATCTTTGGAAAGATCCTTGCATCGCCTTTGCTATCAA 1805
||||||||||| ||||||||||||||||| |||||||||||||| ||||||||||||||
Sbjct 1963 TGCATTTGACTCGACTCTTGCAGATCTTTGTAAAGATCCTTGCATTGCCTTTGCTATCAA 2022
Query 1806 AACACTGACTGGAGAATCGCTGTGCCTTCCCAACACGCCAGCGATCTCTTCTGATCCCAT 1865
||| || || |||||||| ||||| |||| |||||| ||||||||||||||| |||||||
Sbjct 2023 AACTCTAACCGGAGAATCTCTGTGTCTTCTCAACACTCCAGCGATCTCTTCTAATCCCAT 2082
Query 1866 TAATAATCACGCCAAGCAGAAAGGAGTCTCCTCTATCCCAGAGACGTCCAG-AAATGTTA 1924
||| || ||| ||||||||||||||||||||| || ||||||||| ||||| ||||||||
Sbjct 2083 TAACAACCACACCAAGCAGAAAGGAGTCTCCTTTACCCCAGAGAC-TCCAGGAAATGTTA 2141
Query 1925 ACACAGGCTCTGAAAACCAGGGATTTCCGAGTACACTCCCGGGTACAGATATCTGGCAAG 1984
||||| |||||||||| | || |||||||||| ||| ||||||| || ||||||||||||
Sbjct 2142 ACACATGCTCTGAAAAACTGGTATTTCCGAGTCCACCCCCGGGTGCAAATATCTGGCAAG 2201
Query 1985 ACCCGTGTATCGACTTTGCTATAAAAACCCTGACAGGCGCAATCCCGATCGGGTTAGATG 2044
|||||||||||||||||||||||||||| || ||||||||||||||||||||||||||||
Sbjct 2202 ACCCGTGTATCGACTTTGCTATAAAAACTCTAACAGGCGCAATCCCGATCGGGTTAGATG 2261
Query 2045 AACCAGATACCAAGTCAAAGTC-CGAGGGGATGACGA-TAACTACAGCAGCAACGCAAGA 2102
|||||||||| ||||||||||| | ||||||||||| || ||||||||||||| |||||
Sbjct 2262 AACCAGATACGAAGTCAAAGTCAC-AGGGGATGACGTCTA-CTACAGCAGCAACACAAGA 2319
Query 2103 AGCTAAAGGTAGGCAAAACAACTGTGATTATATGGTTCAACAATGTAACATGAAGAACAA 2162
|||||||||||||||||||||||||||||||||| | | | |||| | || |
Sbjct 2320 AGCTAAAGGTAGGCAAAACAACTGTGATTATATG----A-C---G-AACA--A-GA-CT- 2365
Query 2163 GACTGCTGGTAAACCTCAGGATCTAAGGTTTACACAATCTTTCTCTAAGGACTAACAATA 2222
| | ||||||||| | ||||||||||||||||||||||||||||||||||||||| |
Sbjct 2366 G--TA--GGTAAACCTGATGATCTAAGGTTTACACAATCTTTCTCTAAGGACTAACAAGA 2421
Query 2223 ACAAAATAAAACCTAGTGTACTTTTAGGTGTTTTCGTATATTAGGGTTTTTGATAATGCC 2282
|||||||||| |||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2422 ACAAAATAAAGCCTACTGTACTTTTAGGTGTTTTCGTATATTAGGGTTTTTGATAATGCC 2481
Query 2283 ATGGGTATAGTGTTAAGATCCATGTGCAATGCCTTAGCTTTATTTTCTTTCGGGTCATGT 2342
|| ||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 2482 ATTGGTATCGTGT-AAGATCCATGTGCAATGCCTTAGCTTTATTTTCTTTCGGGCCATGT 2540
Query 2343 TCTGTTGTAAATACATATGTATTAGTGTTGTGTATCGACAGAACCTGGAAAAACTCATAA 2402
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 2541 TCTGTTGTAAATACATATGTATTAGTGTTGTGTATCGACAGAACCTTGAAAAACTCATAA 2600
Query 2403 AAA 2405
|||
Sbjct 2601 AAA 2603
Score = 1430 bits (774), Expect = 0.0
Identities = 1038/1158 (90%), Gaps = 48/1158 (4%)
Strand=Plus/Plus
Query 1 AAATCACACAATCAGACAAAAT-AAAAGGTTCCTTCTTTATAACTTCCGACGGTGTCCAT 59
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1 AAATCACACAATCAGACAAAATAAAAAGGTTCCTTCTTTATAACTTCCGACGGTGTCCAT 60
Query 60 TATCCGAATCTGACAATTCTTGATGGGTTTTGGCGTTTTTTGTTGAGAAACCATTCTGGG 119
|||| ||||| |||||||||||||||||||||||||||| ||||| ||||||||||| |
Sbjct 61 TATCTGAATCCGACAATTCTTGATGGGTTTTGGCGTTTTGAGTTGATAAACCATTCTGAG 120
Query 120 TTGCGAATCAGGGATTTAAGAGAGAGAGGAAAGTGGTTTTCCGGTGACCGGAGAAATGAA 179
||| ||||||||||| ||||||||||||||||||||||| ||||||||||||| |||||
Sbjct 121 TTGTGAATCAGGGATACAAGAGAGAGAGGAAAGTGGTTTTACGGTGACCGGAGAGATGAA 180
Query 180 TGGAGAAGGGATCTCTGATGGTTTATCGGCTGAGCCTGAGAGGAAAGTGGAAATCAGAGT 239
|||||||||||||||||||| || | | | | | ||||||||||||||||||| |||||
Sbjct 181 CGGAGAAGGGATCTCTGATGG-TT-T-GTC-G-G-CTGAGAGGAAAGTGGAAATTAGAGT 234
Query 240 GAGGAAGAATGGGAGAAAGGATAAGGTTATAGTTGAGAAATCTGCAGCTCAAGGCTTACC 299
||||||||||||||||||||||||||||||||||||||||||||| |||||||| |||||
Sbjct 235 GAGGAAGAATGGGAGAAAGGATAAGGTTATAGTTGAGAAATCTGCTGCTCAAGGTTTACC 294
Query 300 TGAAGGATGGATCAAGAAGCTTGAAATAACAAACAGATCAGGCCGTAAAAACAGAAGAGA 359
|||||||||||||||||| |||||||||||||| |||||||||||||||| |||||||||
Sbjct 295 TGAAGGATGGATCAAGAAACTTGAAATAACAAATAGATCAGGCCGTAAAACCAGAAGAGA 354
Query 360 TCCATTCTTCATTGACCCTAAAAATGAGTATATCTTTCAATCGTTCAAAGACGCATCACG 419
||||||||||||||||||||||| |||||||||||||||||| |||||||||||||||||
Sbjct 355 TCCATTCTTCATTGACCCTAAAAGTGAGTATATCTTTCAATCCTTCAAAGACGCATCACG 414
Query 420 GTATGTTGAGACTGGCAATATTGGACATTATGCACGTAAATTGAAGGAAAGCGATATCGA 479
||||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||
Sbjct 415 GTATGTTGAGACTGGCAATATTGGACATTATGCACGTAAATTGAAAGAAAGTGATATCGA 474
Query 480 AGATGATGATTCTGGAAATGGAAAGACCGTCCTTCGTCTGGAGTATGTGGAAAAGAAATC 539
|||||||||||| |||||||||||||| || |||||||||||||||||||| |||| |||
Sbjct 475 AGATGATGATTCCGGAAATGGAAAGACTGTTCTTCGTCTGGAGTATGTGGACAAGAGATC 534
Query 540 TGCAGATGATTTATTGGAAAAGGAGAAAAAGATAGATATTCATGTCAGAAAAAGTAAACG 599
|||||||||| |||||||||| ||||||| ||||||| ||||||||| |||||||||
Sbjct 535 TGCAGATGATGTATTGGAAAAAGAGAAAACGATAGATG---ATGTCAGAAGAAGTAAACG 591
Query 600 GAGAAACTTATCTTCTTCTGATGAACATTCCAAGAATTATAAAATGAATTCTGA-TTGGA 658
|||||||||||||||||||||||||||||||||||||| |||||||| |||||| ||| |
Sbjct 592 GAGAAACTTATCTTCTTCTGATGAACATTCCAAGAATTGTAAAATGACTTCTGACTTG-A 650
Query 659 GCATCGTAACCTCACCAGTTCTTCAGGC---G---AA-A-G-A-----T-------CCTA 697
|||| |||||||||| ||||||| ||| | || | | | | ||||
Sbjct 651 GCATTGTAACCTCACAAGTTCTTGAGGATTTGGGGAAGAAGGAAGAGGTGAAAGATCCTA 710
Query 698 TCGAAAAGCAGCCCATAGTGAAACGGGTTACTAGGAGCCAATCTAAAGCCAGTACGAATG 757
|||||||||||| ||||| ||||||||||||||| |||||| ||||||||||||||| ||
Sbjct 711 TCGAAAAGCAGCTCATAGCGAAACGGGTTACTAGAAGCCAAACTAAAGCCAGTACGACTG 770
Query 758 AGGAAGTCGT---AGATATAAAAAGGAAAAACTTGTCTTCATCAAATGCAAAATCAGAAA 814
|||||||||| |||| ||||||| ||| || ||||||||||||||||||||||||||
Sbjct 771 AGGAAGTCGTCGTAGATTTAAAAAG-AAAT-CT-GTCTTCATCAAATGCAAAATCAGAAA 827
Query 815 AAGATTTTGTAAAATCGAGGTTGAGCAGTGCAAGGTCACAAAAACCAAAGAAGGAATCTC 874
|||||| |||||| || || | | | ||||||||||||||||||||||||| ||
Sbjct 828 AAGATTCTGTAAACTCCAG-T-G-----T--AAGGTCACAAAAACCAAAGAAGGAAGCTG 878
Query 875 TTTTGAAGGAAGAAGAGGAACAAGATTCTACTAAAAAACAGCTTACAAGGAGTAAAGCTA 934
|| |||||||||||||||||||||||||| || | |||| | | ||||||||||||| |
Sbjct 879 TTATGAAGGAAGAAGAGGAACAAGATTCTTCTGAGAAACGGATCACAAGGAGTAAAGTTG 938
Query 935 AAGTGAAGACGAATGAGTTAAGTAATAGTGTAGCCCGACGAACATCAAAACGATTAGCTG 994
||| ||||| ||||||| |||||||||||||||||||||||||||||||||| |||||||
Sbjct 939 AAGAGAAGAAGAATGAGCTAAGTAATAGTGTAGCCCGACGAACATCAAAACGGTTAGCTG 998
Query 995 GTATTGAGCTTGAACCAACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAATAGTGC 1054
|||||||||||||||||||||||||||||||||||||| ||||||||||||||||||| |
Sbjct 999 GTATTGAGCTTGAACCAACGCCTGAACTGAAGACAAGAGCCAAAGTTCAACGAATAGTAC 1058
Query 1055 CTCCTGATGATGAACCAACGCCTGATCTGAAGACAAGAACCAAAGTTCAACGAGTAGTAC 1114
| | |||||||||||| |||||||| ||||||||||||||||||||||||||||||||||
Sbjct 1059 CGCTTGATGATGAACCGACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAGTAGTAC 1118
Query 1115 CTCCTGATGATGAGCCGA 1132
| ||||||||||| ||||
Sbjct 1119 CGCCTGATGATGAACCGA 1136
Score = 187 bits (101), Expect = 4e-46
Identities = 119/128 (93%), Gaps = 0/128 (0%)
Strand=Plus/Plus
Query 1005 TGAACCAACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAATAGTGCCTCCTGATGA 1064
|||||| |||||||||||||||||||||||||||||||||||| |||| || ||||||||
Sbjct 1069 TGAACCGACGCCTGAACTGAAGACAAGAACCAAAGTTCAACGAGTAGTACCGCCTGATGA 1128
Query 1065 TGAACCAACGCCTGATCTGAAGACAAGAACCAAAGTTCAACGAGTAGTACCTCCTGATGA 1124
|||||| |||||||| |||||||||||||||||| |||||||| ||||||||||||||||
Sbjct 1129 TGAACCGACGCCTGAACTGAAGACAAGAACCAAAATTCAACGAATAGTACCTCCTGATGA 1188
Query 1125 TGAGCCGA 1132
||| ||||
Sbjct 1189 TGAACCGA 1196
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 119477297100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5