BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495293
Length=841
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52240.1 | Symbols: MSBP1, ATMP1, AtMAPR5 | membrane steroid... 1310 0.0
> AT5G52240.1 | Symbols: MSBP1, ATMP1, AtMAPR5 | membrane steroid
binding protein 1 | chr5:21213058-21214739 FORWARD LENGTH=908
Length=908
Score = 1310 bits (709), Expect = 0.0
Identities = 805/850 (95%), Gaps = 12/850 (1%)
Strand=Plus/Plus
Query 1 CCATGGCGCTAGAACTATGGCAAACTCTCAAAGAAGCAATCCATGCTTACACAGGTCTCT 60
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 62 CCATGGCGTTAGAACTATGGCAAACTCTCAAAGAAGCAATCCATGCTTACACAGGTCTTT 121
Query 61 CTCCTGTAGTATTCTTCACCGCTCTCGCTCTCGCCTTCGCCATCTACCAAGTCATCTCAG 120
||||||| || |||||||| ||||| ||||||||||||||||| ||||||||||||||||
Sbjct 122 CTCCTGTTGTCTTCTTCACTGCTCTAGCTCTCGCCTTCGCCATTTACCAAGTCATCTCAG 181
Query 121 GCTGGTTTGCCTCACCGTTCGATGATGTTAACCGACATCAGAGAGCTAGATCCTTGGCTC 180
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 182 GCTGGTTTGCCTCGCCGTTCGATGATGTTAACCGACATCAGAGAGCTAGATCCTTGGCTC 241
Query 181 AAGAGAATGAGCCACCGATTCCTCAGCCTGTTCAAGTCGGTGAGATCACGGAAGAGGAGC 240
||||| | |||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 242 AAGAGGAGGAGCCACCGATTCCTCAGCCTGTTCAAGTCGGTGAGATCACGGAGGAGGAGC 301
Query 241 TTAAACAGTACGATGGCTCTGATCCTCAAAAGCCCCTTCTTATGGCTATCAAACATCAGA 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 302 TTAAACAGTACGATGGCTCTGATCCTCAAAAGCCCCTTCTTATGGCTATCAAACATCAGA 361
Query 301 TCTATGATGTTACACAAAGCAGGATGTTCTACGGACCAGGAGGCCCATACGCTTTGTTTG 360
||||||||||||||||||||||||||||||||||||||||||| ||||| ||||||||||
Sbjct 362 TCTATGATGTTACACAAAGCAGGATGTTCTACGGACCAGGAGGACCATATGCTTTGTTTG 421
Query 361 CAGGGAAAGACGCTAGCCGAGCTCTTGCAAAGATGTCGTTTGAGGAGAAAGATCT-GACT 419
||||||||||||||||||||||||||||||||||||| |||||||||||||| || ||||
Sbjct 422 CAGGGAAAGACGCTAGCCGAGCTCTTGCAAAGATGTCATTTGAGGAGAAAGA-CTTGACT 480
Query 420 TGGGATATCTCTGGTCTTGGTCCCTTTGAGCTAGAAGCTCTTCAGGACTGGGAATACAAG 479
|||||| |||||||||||||||||||||||||||| |||||||| || ||||| ||||||
Sbjct 481 TGGGATGTCTCTGGTCTTGGTCCCTTTGAGCTAGATGCTCTTCAAGATTGGGAGTACAAG 540
Query 480 TTCATGAGCAAATATGCTAAGGTTGGTACTGTCAAAGTGGCCGGTTCAGAACCTGAAACC 539
||||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 541 TTCATGAGCAAGTATGCTAAGGTTGGTACTGTCAAAGTGGCTGGTTCAGAACCTGAAACC 600
Query 540 GCATCTGTGTCTGAACCCGCAGAGAATGTTGACCGAGATGCTCATGTAACCACAACGCCT 599
|||||||| ||||||||| ||||||||||||| | |||||||||||||||||||||||||
Sbjct 601 GCATCTGTCTCTGAACCCACAGAGAATGTTGAGCAAGATGCTCATGTAACCACAACGCCT 660
Query 600 GAGAAGACCGCTGTTGATAAGAGTGATGAGGCTCCTGCTGAGACTGAGTTGAAG--G-AG 656
| |||||||| |||||||||||||||||| |||||||||||||||| ||||||| | ||
Sbjct 661 GGGAAGACCGTTGTTGATAAGAGTGATGATGCTCCTGCTGAGACTGTGTTGAAGAAGGAG 720
Query 657 ---TAGAGCCCATTTCCAAGATTTGCTCTGATTTTTCATAGAGACCAGTTTTAAGAAA-G 712
||||||||||||||||||||||||||||||| |||||||||||||||||| |||| |
Sbjct 721 GAGTAGAGCCCATTTCCAAGATTTGCTCTGATTTGTCATAGAGACCAGTTTTATGAAAAG 780
Query 713 GATTGTAGAATCTCTAATGTTGAAGTGTCAATGATAATCTTGTTTTACTTTCCCAAAAAA 772
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 781 GATTGTAGAATCTCTAATGTTGAAGTGTCAATGATAATCTTGTTTTACTTTCCCAAAAAA 840
Query 773 TAAAGATTGCTGATTAATGATAAGACAAAAG-GTTTTATAAACTGCTCATATCAGAAGGC 831
||||||||||||||||||||||||| |||| |||||||||||||| ||||||||||||
Sbjct 841 TAAAGATTGCTGATTAATGATAAGAAAAAAATGTTTTATAAACTGC--ATATCAGAAGGC 898
Query 832 GTTGCATTGC 841
||||||||||
Sbjct 899 GTTGCATTGC 908
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 40991063952
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5