BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495294
Length=1306
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52250.1 | Symbols: RUP1 | Transducin/WD40 repeat-like super... 2074 0.0
> AT5G52250.1 | Symbols: RUP1 | Transducin/WD40 repeat-like superfamily
protein | chr5:21216855-21218226 FORWARD LENGTH=1372
Length=1372
Score = 2074 bits (1123), Expect = 0.0
Identities = 1251/1312 (95%), Gaps = 11/1312 (1%)
Strand=Plus/Plus
Query 1 ATAGTTTCTTGTGGACCTAACAAAAACTAGTCTTAACTCATTCATGGAGGCTTTGTTCTG 60
|||||||| |||||||||||| |||||||||| |||||||||||||||||||||||||||
Sbjct 1 ATAGTTTCGTGTGGACCTAACTAAAACTAGTCGTAACTCATTCATGGAGGCTTTGTTCTG 60
Query 61 CTCTGAGATACCCAACAACAACATCAGATCTTCCATTAACGATC--TC-TCTTCTTCTTC 117
|||||||||||||||||||||||||||||||||||||||||||| || |||||||||||
Sbjct 61 CTCTGAGATACCCAACAACAACATCAGATCTTCCATTAACGATCTATCTTCTTCTTCTTC 120
Query 118 ATATACATGGCCAATGATCATGACCTCCTCTTCTACTTCTTCTTCATCTCCCACAATCAT 177
|||||||||||||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct 121 ATATACATGGCCAATGATCATGACCTCCTCTTCTTCTTCTTCTTCATCTCCCACAATCAT 180
Query 178 GAACATAGAGAACATTCCTAGATGCGACTGGGAtctctctctctcCGCCGTCGTTTCCTC 237
|||||||||||||||||||||||||||||||||||||||||| |||||||| ||||||||
Sbjct 181 GAACATAGAGAACATTCCTAGATGCGACTGGGATCTCTCTCTTTCCGCCGTTGTTTCCTC 240
Query 238 CGCATCCACTGGATCAGACGCTATCGGAGCAATCGAGTTTGACCCTACCGGAGAGATCAT 297
||||||||| ||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 241 CGCATCCACCGGATCAGACGCTATCGGAGCAATCGAGTTCGACCCTACCGGAGAGATCAT 300
Query 298 AGCTACTGGAGGGATCGCGAGAAAGATCAGATGGTATCGTTTAAGCTCTTTGTTAGAGTC 357
|||||| ||||| ||||| ||||||||||||| |||||||||||||||||||||||||||
Sbjct 301 AGCTACGGGAGGAATCGCAAGAAAGATCAGATCGTATCGTTTAAGCTCTTTGTTAGAGTC 360
Query 358 ACGTGACGATCACGTAACAGCTTCAGAGAGCTGTATCTGCACGCCAGCGAAGCTTAGTAG 417
|||||||||||||||||||||||||||||||| ||| |||||||| ||||||||||||||
Sbjct 361 ACGTGACGATCACGTAACAGCTTCAGAGAGCTATATTTGCACGCCGGCGAAGCTTAGTAG 420
Query 418 TCTCAAATGGAGACCCGATTTATCCGGTCGGGTTATCGGGTCAGGAGATTACGACGGAGT 477
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 421 TCTCAAATGGAGACCCGATTTTTCCGGTCGGGTTATCGGGTCAGGAGATTACGACGGAGT 480
Query 478 TGTCACAGAGTACGACGTTGAGAAACAAGTGCCTGTTTCCGAGAGAGACGAGCATGGAGG 537
|||||| ||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 481 TGTCACCGAGTACGACGTGGAGAAACAAGTGCCTGTTTCCGAGAGAGACGAGCATGGAGG 540
Query 538 TAGAAGGATTTGGAGCGTAGACTACACGCTCTACAATGGCTCTCTTATAGGCGCGTCAGG 597
|||||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||
Sbjct 541 TAGAAGGATTTGGAGCGTGGACTACACGCTTTACAATGGCTCTCTTATAGGCGCGTCAGG 600
Query 598 CTCCGACGACGGAACGGTTCAAATGTGGGATCCACGTAACGGAGGGACGTTGGAAGAAAC 657
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 601 CTCCGACGACGGAACGGTTCAAATGTGGGATCCACGTAACGGAGGGACGTTAGAAGAAAC 660
Query 658 GGTTAGGCCCGGAGGTGGAGCGGCGATTTGTTCGGTAGAGTTTGATCCATTCGGTGGATC 717
|||||||||||| ||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 661 GGTTAGGCCCGGTGGTGGAGCGGCGATTTGTTCGGTAGAGTTCGATCCGTTCGGTGGATC 720
Query 718 TTCTTTAGCCGTTGGATGTGCTGACCGGAATGCTTACGTGTACGACATCAGACGACTCGT 777
||| |||||||||||||||||||||||||||| |||||||| ||||||||| |||| ||
Sbjct 721 TTCCATAGCCGTTGGATGTGCTGACCGGAATGCCTACGTGTATGACATCAGAAGACTAGT 780
Query 778 TGACCCTTTGATCGTATTAGACGGTCATACCAAAACGGTGACGTATGCTCGGTTCTTGGA 837
||||||||||||||||||||||| |||||||||||||||||||||||||| ||| ||||
Sbjct 781 GGACCCTTTGATCGTATTAGACGGCCATACCAAAACGGTGACGTATGCTCGATTCATGGA 840
Query 838 TTCTCACACGATCGTTACCGGTTCGACCGACGGGAGCTTGAAGCAATGGGATATAGATAA 897
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 841 TTCTCACACGATCGTTACCGGTTCGACCGACGGGAGCTTGAAGCAATGGGATATAGATAA 900
Query 898 TGGACGGCGCGTGGTTCGCACGTACCGAGGGCATGTTAATAGCCGGAACTTTGTTGGGTT 957
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 901 TGGACGGCGCGTGGTTCGCACGTACCGAGGGCATGTGAATAGCCGGAACTTTGTTGGGTT 960
Query 958 GTCGGTTTGGAGACATGGTGGTTTGGTCGTGTCTGGGTCGGAGAATAACCAAGTGTTTGC 1017
||||||||||||||||||||||||||||||||| ||||| |||||||||||||||||||
Sbjct 961 GTCGGTTTGGAGACATGGTGGTTTGGTCGTGTCCGGGTCAGAGAATAACCAAGTGTTTGT 1020
Query 1018 GTACGATAAGAGGTGGGAGGAACCGGTTTGGGTTTGTGGATTGGGTCA-ACCGGACCGGT 1076
|||||||||||||||||||||||||||||||||||||||||||||||| || | ||||||
Sbjct 1021 GTACGATAAGAGGTGGGAGGAACCGGTTTGGGTTTGTGGATTGGGTCATAC-GAACCGGT 1079
Query 1077 TTG-AGGCTGACCGACGGTTTGTGAGTAGTGTTTGTTTGAGACAAGTGGATGAAGACTGG 1135
||| | |||||||||||||||| |||||||| ||||||||||||||||||||||| |||
Sbjct 1080 TTGGAT-CTGACCGACGGTTTGTTAGTAGTGTGTGTTTGAGACAAGTGGATGAAGATTGG 1138
Query 1136 TGCACACTTGCTG-CTGGAGGATCCGATGGGGCTTTAGAGATTTTCTCGGGCAAACGGAG 1194
|||||||||| || | ||||||||||||||||||||||| |||||||||||||||| ||
Sbjct 1139 TGCACACTTG-TGGCCGGAGGATCCGATGGGGCTTTAGAAATTTTCTCGGGCAAACAAAG 1197
Query 1195 CTAATCAGTATTTATATTAtttttttCTGCTCATGATTGATACAAACTGTTTTTCAGTTG 1254
|||||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1198 CTAATCAGTATTTATATTATTTTTTTCTGCTCATGATTAATACAAACTGTTTTTCAGTTG 1257
Query 1255 ATTTTATAAACGGTCTATAGTTATTAATTTTAATTTGATTGAATGTTACTAC 1306
|||||||| | |||||||||||||||||||||| |||||||||||||||||
Sbjct 1258 ATTTTATA--CTGTCTATAGTTATTAATTTTAATATGATTGAATGTTACTAC 1307
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 64256697600
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5