BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495295
Length=870
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52260.1 | Symbols: AtMYB19, MYB19 | myb domain protein 19 |... 1375 0.0
AT4G25560.1 | Symbols: AtMYB18, MYB18 | myb domain protein 18 |... 405 4e-112
AT5G55020.1 | Symbols: ATMYB120, MYB120 | myb domain protein 12... 60.2 3e-08
> AT5G52260.1 | Symbols: AtMYB19, MYB19 | myb domain protein 19
| chr5:21220165-21221288 FORWARD LENGTH=872
Length=872
Score = 1375 bits (744), Expect = 0.0
Identities = 829/870 (95%), Gaps = 6/870 (1%)
Strand=Plus/Plus
Query 1 ATGACCAAATCTGGAGAGAGACCAAAACAGAGACAGAGGAAAGGGTTATGGTCACCTGAA 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1 ATGACCAAATCTGGAGAGAGACCAAAACAGAGACAGAGGAAAGGGTTATGGTCACCTGAA 60
Query 61 GAAGACCAGAAGCTCAAGAGTTTCATCCTCTCTCGTGGCCATGCTTGCTGGACCACTGTT 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 61 GAAGACCAGAAGCTCAAGAGTTTCATCCTCTCTCGTGGCCATGCTTGCTGGACCACTGTT 120
Query 121 CCCATCCTAGCTGGATTGCAAAGGAATGGGAAAAGCTGCAGATTAAGGTGGATTAATTAC 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 121 CCCATCCTAGCTGGATTGCAAAGGAATGGGAAAAGCTGCAGATTAAGGTGGATTAATTAC 180
Query 181 CTAAGGCCAGGATTAAAGAGAGGGACGTTTAGTGAAGAAGAAGAAGAGACCATCTTGACT 240
||||| |||||| ||||||| ||| |||||||||||||||||||||||||||||||||||
Sbjct 181 CTAAGACCAGGACTAAAGAGGGGGTCGTTTAGTGAAGAAGAAGAAGAGACCATCTTGACT 240
Query 241 TTACATGCTTCCTTGGGTAACAAGTGGTCGCGGATTGCAAAATACCTACCTGGAAGAACA 300
|||||| |||||||||||||||||||||| |||||||||||||| |||| |||||||||
Sbjct 241 TTACATTCTTCCTTGGGTAACAAGTGGTCTCGGATTGCAAAATATTTACCGGGAAGAACA 300
Query 301 GACAACGAGATTAAGAACTACTGGCACTCTTATCTGAAGAAGAGATGGCTCAAATCTCAA 360
|||||||||||||||||||| ||||| || ||||||||||||||||||||||||||||||
Sbjct 301 GACAACGAGATTAAGAACTATTGGCATTCCTATCTGAAGAAGAGATGGCTCAAATCTCAA 360
Query 361 CCACAGCTCAAAACCCAAAGATCAGACCTCACAGACTCTTCTCCTTCTTCACTACTTTCT 420
||||| ||||||| ||||| ||||||||||||||| ||| | | ||||||||||||||||
Sbjct 361 CCACAACTCAAAAGCCAAATATCAGACCTCACAGAATCT-C-C-TTCTTCACTACTTTCT 417
Query 421 TGCGGGAAAAGAAATCCGGAAACCGAAACCCTAGATCACGTGATCTCCTTCCAGAAATTT 480
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 418 TGCGGGAAAAGAAATCTGGAAACCGAAACCCTAGATCACGTGATCTCCTTCCAGAAATTT 477
Query 481 GCAGAGAAGCCAACTTCATCACCATCCAAAGACAGCAATAACAACATGATCATGAACAAC 540
||||||| ||||||||||||||||||||||| ||||| |||||||||||||||||||||
Sbjct 478 TCAGAGAATCCAACTTCATCACCATCCAAAGAAAGCAACAACAACATGATCATGAACAAC 537
Query 541 AGTAATAACTTACCTAAACTGTTCTTCTCCGAGTGGATCAGTTCTTCAAATCCACACATC 600
||||||||||| ||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 538 AGTAATAACTTGCCTAAACTGTTCTTCTCTGAGTGGATCAGTTCTTCAAATCCACACATC 597
Query 601 GATTACTCCTCTGCTTTTACAGATTCTAAGCACATTAATGAAACTCAAGATCAAATCGAT 660
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||| ||
Sbjct 598 GATTACTCCTCTGCTTTTACAGATTCCAAGCACATTAATGAAACTCAAGATCAAATCAAT 657
Query 661 GAAGAAGAAGTGATGATGATCAATAACAACAACAACTACTCTTCACTTGAGGATGTCATG 720
||||| ||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 658 GAAGAGGAAGTGATGATGATCAATAACAACAAC---TACTCTTCACTTGAGGATGTCATG 714
Query 721 CTCCGTACAGAGTTTTTGCAGCCTGATCATGAGTATGCAAATTATTATTCTTCTGGGGAT 780
||||||||||| |||||||||||||||||||| ||||||||||||||||||||||| |||
Sbjct 715 CTCCGTACAGATTTTTTGCAGCCTGATCATGAATATGCAAATTATTATTCTTCTGGAGAT 774
Query 781 TTCTTCATCAACAATGACCAAAATTATGTCTaaaaaaaGTGAATATGATCGTAAGAGGAA 840
||||||||||||| ||||||||||||||||||| || |||||||||||||||||||||||
Sbjct 775 TTCTTCATCAACAGTGACCAAAATTATGTCTAAGAAGAGTGAATATGATCGTAAGAGGAA 834
Query 841 CATAAACAAGTTACTTGTATTACAAGTTAC 870
||||| | |||||||||| |||||||||||
Sbjct 835 CATAAGCTAGTTACTTGTGTTACAAGTTAC 864
> AT4G25560.1 | Symbols: AtMYB18, MYB18 | myb domain protein 18
| chr4:13052555-13053618 FORWARD LENGTH=897
Length=897
Score = 405 bits (219), Expect = 4e-112
Identities = 500/630 (79%), Gaps = 42/630 (7%)
Strand=Plus/Plus
Query 29 AGAGACAGAGGAAAGGGTTATGGTCACCTGAAGAAGACCAGAAGCTCAAG-AGTTTCATC 87
||||||| |||||||||||||||||||||||||||||| ||||||| ||| || ||||||
Sbjct 23 AGAGACATAGGAAAGGGTTATGGTCACCTGAAGAAGACGAGAAGCT-AAGGAGCTTCATC 81
Query 88 CTCTCTCGTGGCCATGCTTGCTGGACCACTGTTCCCATCCTAGCTGGATTGCAAAGGAAT 147
|||||| ||||||| ||||||||||||||||||||||| |||||| || |||||||||
Sbjct 82 CTCTCTTATGGCCATTCTTGCTGGACCACTGTTCCCATCAAAGCTGGGTTACAAAGGAAT 141
Query 148 GGGAAAAGCTGCAGATTAAGGTGGATTAATTACCTAAGGCCAGGATTAAAGAGAGGG-AC 206
||||| |||||||||||||| ||||||||||||||||| ||||| |||||||| || |
Sbjct 142 GGGAAGAGCTGCAGATTAAGATGGATTAATTACCTAAGACCAGGGTTAAAGAG-GGATAT 200
Query 207 GTTTAGTGAAGAAGAAGAAGAGACCATCTTGAC-TTTACATGCTTCCTTGGGTAACAAGT 265
| |||||| ||||||||||||||| |||||||| ||| ||| ||||||||||||||||||
Sbjct 201 GATTAGTGCAGAAGAAGAAGAGACTATCTTGACGTTT-CATTCTTCCTTGGGTAACAAGT 259
Query 266 GGTCGCGGATTGCAAAATACCTACCTGGAAGAACAGACAACGAGATTAAGAACTACTGGC 325
|||||| || || |||| | |||| |||||||||||||| ||||| |||||||| ||||
Sbjct 260 GGTCGCAAATAGCTAAATTCTTACCGGGAAGAACAGACAATGAGATAAAGAACTATTGGC 319
Query 326 ACTCTTATCTGAAGAAGAGATGGCTCAAATCTCA-ACC--ACA-GCT-CAAAACCCAAAG 380
||||| || |||| |||| ||||||||| ||||| | | ||| | | ||||| | |
Sbjct 320 ACTCTCATTTGAAAAAGAAATGGCTCAAGTCTCAGAGCTTACAAGATGCAAAATCTATT- 378
Query 381 ATCAGACCTCACAGAC-TCTTC-TCCTTCTTCACTACTTTCTTGCGGGAAAAGAAATCCG 438
|| |||| | | ||||| || | | ||||| || |||| || ||||||||||||
Sbjct 379 -TCC--CCTC-CTT-CGTCTTCATCAT-CATCACTTGTTGCTTGTGGAAAAAGAAATCCG 432
Query 439 GAAACCGAAACCCTAGA-TCACGTGATCTCCTTCCAGAAATTTGC-AGAGAAGCCAA-CT 495
|||||| | | | || ||||||| |||||||||||| | || | |||||| | || ||
Sbjct 433 GAAACCTTGATC-TCGAATCACGTGTTCTCCTTCCAGAGACTT-CTAGAGAA-CAAATCT 489
Query 496 TCATCACCATC-CAAAGACAGCAAT--AAC-AACATG--ATCA-TGAACAACAG-TAAT- 546
||||| || || ||| || ||||| || |||| | |||| || | | | | |
Sbjct 490 TCATCTCCCTCACAA-GAAAGCAACGGAAATAACA-GCCATCAATGTTCTTCTGCTCCTG 547
Query 547 A-ACTTACCTAAA-CTGTTCTTCTCCGAGTGGATCAGTTCTTCAAATCCACACATCGATT 604
| | || || || || |||||||| || ||| | ||||||| |||| |||| |||||
Sbjct 548 AGA-TT-CC-AAGGCTTTTCTTCTCTGAATGGCTTTCTTCTTCATATCCCCACACCGATT 604
Query 605 ACTCCTCTGCTTTTACAGATTCTAAGCACA 634
| ||||||| ||||| || ||||||||||
Sbjct 605 ATTCCTCTGAGTTTACCGACTCTAAGCACA 634
> AT5G55020.1 | Symbols: ATMYB120, MYB120 | myb domain protein
120 | chr5:22324599-22326248 REVERSE LENGTH=1572
Length=1572
Score = 60.2 bits (32), Expect = 3e-08
Identities = 36/38 (95%), Gaps = 0/38 (0%)
Strand=Plus/Plus
Query 287 TACCTGGAAGAACAGACAACGAGATTAAGAACTACTGG 324
|||| ||||||||||||||||||||||||||||| |||
Sbjct 329 TACCGGGAAGAACAGACAACGAGATTAAGAACTATTGG 366
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 42447854215
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5