BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495305
Length=749
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52360.1 | Symbols: ADF10 | actin depolymerizing factor 10 |... 1136 0.0
AT3G46010.2 | Symbols: ADF1, atadf, ATADF1 | actin depolymerizi... 158 9e-38
AT3G46000.1 | Symbols: ADF2 | actin depolymerizing factor 2 | c... 132 6e-30
> AT5G52360.1 | Symbols: ADF10 | actin depolymerizing factor 10
| chr5:21257934-21259342 REVERSE LENGTH=750
Length=750
Score = 1136 bits (615), Expect = 0.0
Identities = 712/756 (94%), Gaps = 18/756 (2%)
Strand=Plus/Plus
Query 1 CTCTTTTTCTTCATTCTTCATCATATCCTCCCACAAAAGAGGACTAAAAA-CAAA-AA-G 57
|||||||||||||||||||||| | || |||||||||||||||| ||||| |||| || |
Sbjct 1 CTCTTTTTCTTCATTCTTCATC-TCTCGTCCCACAAAAGAGGACAAAAAACCAAATAACG 59
Query 58 AAGAAGTCCCATTTCTCTTTGTTGTCTTAGGTTTTACCTTCATCAACCAAACGCAATGGC 117
||||||||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 60 -AGAAGTCCCATTTCTCTTTGTTGTCTTAGGTGTTACCTTCATCAACCAAACGCAATGGC 118
Query 118 GAACGCGGCCTCGGGGATGGCGGTGGAGGACGAATGTAAGCTGAAGTTTTTGGAGCTAAA 177
||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 119 GAACGCGGCGTCGGGGATGGCGGTGGAGGACGAGTGTAAGCTGAAGTTTTTGGAGCTAAA 178
Query 178 AGCGAAGAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGGTGGTAGA 237
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 179 AGCGAAGAGAAACTATAGGTTCATAATATTCAGGATAGATGGACAACAAGTGGTGGTAGA 238
Query 238 AAAGCTGGGAAGCCCCGAGGAGAACTACGACGATTTCTCCAATTCCCTACCGCCAAATGA 297
|||||||||||||||| | |||||||||||||||||| |||||| |||||||||||||||
Sbjct 239 AAAGCTGGGAAGCCCCCAAGAGAACTACGACGATTTCACCAATTACCTACCGCCAAATGA 298
Query 298 ATGCCGCTACGCTGTTTATGACTTCGACTTCACCACTGCTGAGAAC-TGCCAGAAGAGCA 356
|||||||||||| |||||||||||||||||||||||||||||||| | |||||||||||
Sbjct 299 ATGCCGCTACGCCGTTTATGACTTCGACTTCACCACTGCTGAGAATAT-CCAGAAGAGCA 357
Query 357 AGATCTTCTTCATCGCGTGGTGACCGGATTCATCTAGAGTAAGGATGAAGATGGTGTATG 416
||||||||||||| || |||| ||||||||||||||||||||||||||||||||||||||
Sbjct 358 AGATCTTCTTCATAGCATGGTCACCGGATTCATCTAGAGTAAGGATGAAGATGGTGTATG 417
Query 417 CGAGCTCAAAGGACAGGTTCAAGAGAGAATTGGATGGTATTCAGGTGGAGTTACAAGCCA 476
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 418 CGAGCTCAAAGGACAGGTTCAAGAGGGAATTGGATGGTATTCAGGTGGAGTTACAAGCCA 477
Query 477 CTGACCCGAGCGAGATGAGTCTCGACATCATCAAAAGTCGAGCTCTCTAGACCTCCATGC 536
||||||||||||||||||||||||||||||||||||||||||||||||||| |||| |||
Sbjct 478 CTGACCCGAGCGAGATGAGTCTCGACATCATCAAAAGTCGAGCTCTCTAGATCTCCTTGC 537
Query 537 TTTTCTAATTACATATCCATAATCATCGTCATTCAAACAATTTCCTCATCTTATGTAACT 596
||||||||||| |||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 538 TTTTCTAATTATATATCCATAATCATTGTCATTCAAACAATTTCCTCATCTTATGTAACT 597
Query 597 TTCGATCTTGGTTTCATTCATTCTTGTTCTTGATTAtttttttat-ttttatttACATAT 655
||||||||||||||||||||||||||||||||| | ||||||| | |||||||||||| |
Sbjct 598 TTCGATCTTGGTTTCATTCATTCTTGTTCTTGACTGTTTTTTTCTATTTTATTTACATTT 657
Query 656 TAAATTGACGTGGGTTTTATACTTTTGCAAACCATGTAGTTAATTTCTCGTGTAATAGCT 715
||||||||| ||||||||||||||| ||||||||||||||| | ||||||||||||||
Sbjct 658 TAAATTGACATGGGTTTTATACTTT-GCAAACCATGTAGTT--T--CTCGTGTAATAGCT 712
Query 716 GAATACTTTCGTTGAAAAA-TAAAGATATAT-TTTT 749
| |||||||||||||| ||||||||||| ||||
Sbjct 713 CA---CTTTCGTTGAAAAAATAAAGATATATCTTTT 745
> AT3G46010.2 | Symbols: ADF1, atadf, ATADF1 | actin depolymerizing
factor 1 | chr3:16909363-16910814 REVERSE LENGTH=905
Length=905
Score = 158 bits (85), Expect = 9e-38
Identities = 172/213 (81%), Gaps = 10/213 (5%)
Strand=Plus/Plus
Query 294 ATGAATGCCGCTACGCTGTTTATGACTTCGACTTCACCACTGCTGAGAACTGCCAGAAGA 353
|||||||||| ||||| |||| || || ||||| ||||||||||| ||||||||||
Sbjct 357 ATGAATGCCGTTACGCCATTTACGATTTTGACTTTGTAACTGCTGAGAATTGCCAGAAGA 416
Query 354 GCAAGATCTTCTTCATCGCGTGGTGACCGGAT-TCATCTAGAG-TAAGGATG-AAGATGG 410
||||||||||||||||||||||||| |||||| | ||| || | || | | ||||||
Sbjct 417 GCAAGATCTTCTTCATCGCGTGGTGTCCGGATATTG-CTA-AGGTGAGAA-GCAAGATGA 473
Query 411 TGTATGCGAGCTCAAAGGACAGGTTCAAGAGAGAATTGGATGGTATTCAGGTGGAGTTAC 470
| || |||||||| ||||||||||||||||| ||| | ||||| ||||| || ||| |||
Sbjct 474 TCTACGCGAGCTCCAAGGACAGGTTCAAGAGGGAACTAGATGGGATTCAAGTAGAGCTAC 533
Query 471 AAGCCACTGACCCGAGC-GAGATG-AGTCTCGA 501
| || ||||| || | | |||||| | ||||||
Sbjct 534 AGGCAACTGATCCAA-CAGAGATGGA-TCTCGA 564
> AT3G46000.1 | Symbols: ADF2 | actin depolymerizing factor 2 |
chr3:16907451-16908999 REVERSE LENGTH=883
Length=883
Score = 132 bits (71), Expect = 6e-30
Identities = 285/384 (74%), Gaps = 32/384 (8%)
Strand=Plus/Plus
Query 113 ATGGCGAACGCGGCCTCGGGGATGGCGGTGGAGGACGAATGTAAGCTGAAGTTTTTGGAG 172
||||| |||||||| ||||| ||||| ||| | || || || |||||||| ||| ||||
Sbjct 178 ATGGCAAACGCGGCATCGGGAATGGCTGTGCATGATGATTGCAAGCTGAAATTTATGGAA 237
Query 173 CTAAAAGCGAAGAGAAACTA-TAGGT-TCATAATATTCAGGATAGATGGACAA-CAAGTG 229
|| || ||||| || ||| | | || |||| | | || ||| || ||| || ||||||
Sbjct 238 CTGAAGGCGAAAAG-AAC-ATTCCGTACCATAGTCTACAAGATTGA-GGATAAGCAAGTG 294
Query 230 GTGGTAGA-AAAGCT-GG-GAAGCCCCGAGGAGAA-C-TACGACGA-TTT-CTCCAATTC 282
| ||||| ||| || || ||| || || | || | || || || ||| | | | |
Sbjct 295 ATTGTAGAGAAA-CTCGGTGAA--CCTGA--ACAATCATATGATGACTTTGCAGCTAGT- 348
Query 283 CCTACC-GCCAAATGAATGCCGCTA-CGCTGTTTATGACTTCGACTTCACCACTGCTGAG 340
|| || | | |||| ||||| || || |||| || |||||||| |||||| |||
Sbjct 349 -CTTCCAG-CTGATGATTGCCGATATTGC-ATTTACGATTTCGACTTTGTCACTGCGGAG 405
Query 341 AACTGCCAGAAGAGCAAGATCTTCTTCATCGCGTGGTGACCGGATTCAT-CTAGAGTAAG 399
||||||||||||||||||||||||||||| || |||| ||||| | | | | ||| ||
Sbjct 406 AACTGCCAGAAGAGCAAGATCTTCTTCATTGCATGGTCTCCGGACAC-TGCCAAAGTGAG 464
Query 400 -GATGAAGATGGTGTATGCGAGCTC-AAAGGACAGGTTCAAGAGAGAATTGGATGGTATT 457
|| |||||| | || |||||||| |||| | ||||||||||||||| | ||||| |||
Sbjct 465 AGAC-AAGATGATTTACGCGAGCTCTAAAG-ATAGGTTCAAGAGAGAACTAGATGGAATT 522
Query 458 CAGGTGGAG-TTACAAGCCACTGA 480
|| ||||| || ||||| |||||
Sbjct 523 CAAGTGGAACTT-CAAGCTACTGA 545
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36369522428
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5