BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495306
Length=1012
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52380.1 | Symbols: | VASCULAR-RELATED NAC-DOMAIN 6 | chr5:... 1493 0.0
> AT5G52380.1 | Symbols: | VASCULAR-RELATED NAC-DOMAIN 6 | chr5:21261353-21263151
REVERSE LENGTH=1065
Length=1065
Score = 1493 bits (808), Expect = 0.0
Identities = 903/948 (95%), Gaps = 10/948 (1%)
Strand=Plus/Plus
Query 1 CAAAGAAACTTGTGTCTTCTTCTTCGTCTTCACTGCCTCCATCGCCGCCGGCGAAATCAA 60
|||| |||||||||||||| | ||||| |||||||||||| ||||||||||||||||||
Sbjct 4 CAAACAAACTTGTGTCTTC--C-TCGTC-TCACTGCCTCCACCGCCGCCGGCGAAATCAA 59
Query 61 TC--GTATTTCTCTGAA-TACAGTGGTCGACCATGGTGAACCAAAGGCGAAGACTTGCGC 117
|| || ||||||| || |||||| ||| || ||||||||||||||| ||||||||||||
Sbjct 60 TCGTGTCTTTCTCT-AATTACAGTAGTCAACAATGGTGAACCAAAGGAGAAGACTTGCGC 118
Query 118 AGAAGAGATACAAGGAAGCTAATCCAGAGCTGTTTCCAAAAGCAGAACCAACACCACCAA 177
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 119 AGAAGCGATACAAGGAAGCTAATCCAGAGCTGTTTCCAAAAGCAGAACCAACGCCACCAA 178
Query 178 AGGACCCTAATaagaagaagaagaagaagaGCTTGTTCAAGAAAAAGAAACCTGGATCTT 237
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 179 AGGACCCTAATAAGAAGAAGAAGAAGAAAAGCTTGTTCAAGAAAAAGAAACCTGGATCTT 238
Query 238 CCACTGATAGACCTCAGAGAAAAGGCTCGTCGACGAGACATCCTCTTCGAGTTCCTGGTA 297
||||||||||||||||||||| |||||| || || |||||||||||||||||||||||||
Sbjct 239 CCACTGATAGACCTCAGAGAACAGGCTCTTCCACAAGACATCCTCTTCGAGTTCCTGGTA 298
Query 298 TGAAACCTGGAGAAGGCTGTTTTATCTGCCACTCCAAAACCCATATTGCTAAGCTCTGTC 357
||||||||||||||||||||||||| || || ||||||||||||||||||||||| ||||
Sbjct 299 TGAAACCTGGAGAAGGCTGTTTTATATGTCATTCCAAAACCCATATTGCTAAGCTTTGTC 358
Query 358 CTGAAAAATCTGAGTGGGAGAGAAACAAGATATGCTTGCAATGTAGGAGGAGAGGGCATA 417
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 359 CTGAAAAATCTGAGTGGGAGAGAAACAAGATATGCTTGCAATGTAGGAGGAGAGGGCATA 418
Query 418 GTCTTAAAAACTGCCCTGAAAAGAACGATGAGAGCTCCGAGAAGAAGCTCTGTTACAATT 477
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 419 GTCTTAAAAACTGCCCTGAAAAGAACAATGAGAGCTCCGAGAAGAAGCTCTGTTACAATT 478
Query 478 GTGGAGATACTGGCCATTCACTTTCCCATTGTCCTTACCCTTTGGAAGATGGAGGGACCA 537
||||||||||||| ||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct 479 GTGGAGATACTGGTCATTCACTTTCCCATTGTCCTTACCCTATGGAAGATGGAGGGACCA 538
Query 538 AATTTGCAAGTTGTTTCATTTGCAAAGGACAGGGGCACATAAGCAAGAACTGTCCTC-AA 596
||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| | ||
Sbjct 539 AATTTGCAAGTTGTTTCATATGCAAGGGACAAGGGCACATAAGCAAGAACTGTCC-CGAA 597
Query 597 AACAAGCATGGAATCTACCCAATGGGCGGGTGTTGTAAAGTGTGTGGGAGTGTGGCGCAT 656
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 598 AACAAGCATGGAATCTACCCAATGGGCGGGTGTTGTAAAGTGTGCGGGAGTGTGGCGCAT 657
Query 657 CTCGTCAAAGACTGTCCCGATAAATTCAACCAAGAGTCAGCCCAACCAAAGAAGACTTCA 716
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct 658 CTCGTCAAAGACTGTCCTGATAAATTCAACCAAGAGTCAGCCCAACCAAAGAAGACTTCA 717
Query 717 AGATTTGATGCTACACCAAGAGGAAAGGTCACTAAGTTAAGTGGGGACGATCTTGAGGAC 776
||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| |||
Sbjct 718 AGATTTGATGCTACACCAAGAGGAAAGCTCACTAAGTTTAGTGGGGACGATCTTGAAGAC 777
Query 777 GATTTCACTGAAGAGCCCAAAAGCAGCAAGAAGATCAATATCTCTGATGATTCGGATCAG 836
|||||||||||||||||||||||||||||||||||||||| |||||||||||| | ||||
Sbjct 778 GATTTCACTGAAGAGCCCAAAAGCAGCAAGAAGATCAATACCTCTGATGATTCAGCTCAG 837
Query 837 AAGAGTGTCGAGGTGAAGAAAAAGAAACAAGGTCCAAAGATTGTCAATTTCGTTGGATGA 896
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 838 AATAGTGTCGAGGTGAAGAAAAAGAAACAAGGTCCAAAGATTGTCAATTTCGTTGGATGA 897
Query 897 TCACAAGAGGATCTAAAAGGGTCATCAATTTTGTAGGAAATATCAAAA 944
||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 898 TCACAAGAGGATCGAAAAGGGTCATCAATTTTGTAGGATATATCAAAA 945
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49581103089
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5