BLASTN 2.2.26+ Reference: Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000), "A greedy algorithm for aligning DNA sequences", J Comput Biol 2000; 7(1-2):203-14. Database: TAIR10_cdna_20110103_representative_gene_model_updated 33,602 sequences; 51,074,197 total letters Query= Ahg495306 Length=1012 Score E Sequences producing significant alignments: (Bits) Value AT5G52380.1 | Symbols: | VASCULAR-RELATED NAC-DOMAIN 6 | chr5:... 1493 0.0 > AT5G52380.1 | Symbols: | VASCULAR-RELATED NAC-DOMAIN 6 | chr5:21261353-21263151 REVERSE LENGTH=1065 Length=1065 Score = 1493 bits (808), Expect = 0.0 Identities = 903/948 (95%), Gaps = 10/948 (1%) Strand=Plus/Plus Query 1 CAAAGAAACTTGTGTCTTCTTCTTCGTCTTCACTGCCTCCATCGCCGCCGGCGAAATCAA 60 |||| |||||||||||||| | ||||| |||||||||||| |||||||||||||||||| Sbjct 4 CAAACAAACTTGTGTCTTC--C-TCGTC-TCACTGCCTCCACCGCCGCCGGCGAAATCAA 59 Query 61 TC--GTATTTCTCTGAA-TACAGTGGTCGACCATGGTGAACCAAAGGCGAAGACTTGCGC 117 || || ||||||| || |||||| ||| || ||||||||||||||| |||||||||||| Sbjct 60 TCGTGTCTTTCTCT-AATTACAGTAGTCAACAATGGTGAACCAAAGGAGAAGACTTGCGC 118 Query 118 AGAAGAGATACAAGGAAGCTAATCCAGAGCTGTTTCCAAAAGCAGAACCAACACCACCAA 177 ||||| |||||||||||||||||||||||||||||||||||||||||||||| ||||||| Sbjct 119 AGAAGCGATACAAGGAAGCTAATCCAGAGCTGTTTCCAAAAGCAGAACCAACGCCACCAA 178 Query 178 AGGACCCTAATaagaagaagaagaagaagaGCTTGTTCAAGAAAAAGAAACCTGGATCTT 237 |||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||| Sbjct 179 AGGACCCTAATAAGAAGAAGAAGAAGAAAAGCTTGTTCAAGAAAAAGAAACCTGGATCTT 238 Query 238 CCACTGATAGACCTCAGAGAAAAGGCTCGTCGACGAGACATCCTCTTCGAGTTCCTGGTA 297 ||||||||||||||||||||| |||||| || || ||||||||||||||||||||||||| Sbjct 239 CCACTGATAGACCTCAGAGAACAGGCTCTTCCACAAGACATCCTCTTCGAGTTCCTGGTA 298 Query 298 TGAAACCTGGAGAAGGCTGTTTTATCTGCCACTCCAAAACCCATATTGCTAAGCTCTGTC 357 ||||||||||||||||||||||||| || || ||||||||||||||||||||||| |||| Sbjct 299 TGAAACCTGGAGAAGGCTGTTTTATATGTCATTCCAAAACCCATATTGCTAAGCTTTGTC 358 Query 358 CTGAAAAATCTGAGTGGGAGAGAAACAAGATATGCTTGCAATGTAGGAGGAGAGGGCATA 417 |||||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 359 CTGAAAAATCTGAGTGGGAGAGAAACAAGATATGCTTGCAATGTAGGAGGAGAGGGCATA 418 Query 418 GTCTTAAAAACTGCCCTGAAAAGAACGATGAGAGCTCCGAGAAGAAGCTCTGTTACAATT 477 |||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||| Sbjct 419 GTCTTAAAAACTGCCCTGAAAAGAACAATGAGAGCTCCGAGAAGAAGCTCTGTTACAATT 478 Query 478 GTGGAGATACTGGCCATTCACTTTCCCATTGTCCTTACCCTTTGGAAGATGGAGGGACCA 537 ||||||||||||| ||||||||||||||||||||||||||| |||||||||||||||||| Sbjct 479 GTGGAGATACTGGTCATTCACTTTCCCATTGTCCTTACCCTATGGAAGATGGAGGGACCA 538 Query 538 AATTTGCAAGTTGTTTCATTTGCAAAGGACAGGGGCACATAAGCAAGAACTGTCCTC-AA 596 ||||||||||||||||||| ||||| ||||| ||||||||||||||||||||||| | || Sbjct 539 AATTTGCAAGTTGTTTCATATGCAAGGGACAAGGGCACATAAGCAAGAACTGTCC-CGAA 597 Query 597 AACAAGCATGGAATCTACCCAATGGGCGGGTGTTGTAAAGTGTGTGGGAGTGTGGCGCAT 656 |||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||| Sbjct 598 AACAAGCATGGAATCTACCCAATGGGCGGGTGTTGTAAAGTGTGCGGGAGTGTGGCGCAT 657 Query 657 CTCGTCAAAGACTGTCCCGATAAATTCAACCAAGAGTCAGCCCAACCAAAGAAGACTTCA 716 ||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||| Sbjct 658 CTCGTCAAAGACTGTCCTGATAAATTCAACCAAGAGTCAGCCCAACCAAAGAAGACTTCA 717 Query 717 AGATTTGATGCTACACCAAGAGGAAAGGTCACTAAGTTAAGTGGGGACGATCTTGAGGAC 776 ||||||||||||||||||||||||||| |||||||||| ||||||||||||||||| ||| Sbjct 718 AGATTTGATGCTACACCAAGAGGAAAGCTCACTAAGTTTAGTGGGGACGATCTTGAAGAC 777 Query 777 GATTTCACTGAAGAGCCCAAAAGCAGCAAGAAGATCAATATCTCTGATGATTCGGATCAG 836 |||||||||||||||||||||||||||||||||||||||| |||||||||||| | |||| Sbjct 778 GATTTCACTGAAGAGCCCAAAAGCAGCAAGAAGATCAATACCTCTGATGATTCAGCTCAG 837 Query 837 AAGAGTGTCGAGGTGAAGAAAAAGAAACAAGGTCCAAAGATTGTCAATTTCGTTGGATGA 896 || ||||||||||||||||||||||||||||||||||||||||||||||||||||||||| Sbjct 838 AATAGTGTCGAGGTGAAGAAAAAGAAACAAGGTCCAAAGATTGTCAATTTCGTTGGATGA 897 Query 897 TCACAAGAGGATCTAAAAGGGTCATCAATTTTGTAGGAAATATCAAAA 944 ||||||||||||| |||||||||||||||||||||||| ||||||||| Sbjct 898 TCACAAGAGGATCGAAAAGGGTCATCAATTTTGTAGGATATATCAAAA 945 Lambda K H 1.33 0.621 1.12 Gapped Lambda K H 1.28 0.460 0.850 Effective search space used: 49581103089 Database: TAIR10_cdna_20110103_representative_gene_model_updated Posted date: Sep 25, 2014 6:13 PM Number of letters in database: 51,074,197 Number of sequences in database: 33,602 Matrix: blastn matrix 1 -2 Gap Penalties: Existence: 0, Extension: 2.5