BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495313
Length=1744
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52430.1 | Symbols: | hydroxyproline-rich glycoprotein fami... 2410 0.0
> AT5G52430.1 | Symbols: | hydroxyproline-rich glycoprotein family
protein | chr5:21282750-21285271 REVERSE LENGTH=1886
Length=1886
Score = 2410 bits (1305), Expect = 0.0
Identities = 1639/1791 (92%), Gaps = 59/1791 (3%)
Strand=Plus/Plus
Query 1 AAGCTGGACTAGATAACGACCGGTGTGAGTGATagagagagagagagaATTCAATCCATC 60
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct 1 AAGCTGGACTAGATAACGACCGGTGTGAGTGAGAGAGAGAGAGAGAGAATTCGATCCATC 60
Query 61 ATTATAACAAAAAC--CTT--C------TTTG-----TTTCT-CATTT-T-A----ATTT 98
||||| |||||| | ||| | |||| ||| | | ||| | | ||||
Sbjct 61 ATTAT-ACAAAACCTTCTTCGCTTTTTATTTGATTTATTTATCCTTTTCTCATTTGATTT 119
Query 99 TCTCGGGAAAATCTCTCTTC--A-TAGATCCAAGTGTTGGTTTCTGAGTAGTAGTAGTAG 155
|||||||||||||||||| | | |||||||||||| ||||||||||||||||||| ||
Sbjct 120 TCTCGGGAAAATCTCTCTGCGTAGTAGATCCAAGTGGTGGTTTCTGAGTAGTAGTA--AG 177
Query 156 TACGCAAATCTGGATGTTATTGT--T-GGTGTGAATCTGA--T-----GA-GA--AAC-- 200
| |||||||||||||||||||| | ||||||||||||| | || || |||
Sbjct 178 CAAGCAAATCTGGATGTTATTGTAGTCGGTGTGAATCTGAGTTCGAAAGATGAGGAACGT 237
Query 201 -GTTAATAATAGCGTTGAGACTGTTAACGCCGCCGCTACCGCCATCGTCACCGCCGAGTC 259
|||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 238 TGTTAATAACAGCGTTGAGACTGTTAACGCCGCCGCTACCGCCATCGTCACCGCCGAGTC 297
Query 260 TCGAGTTCAGCCGTCGTCTGT-TCAGAAGGGAAGATGGGGAAAGTGTTGGAGTTTATATT 318
|||||| |||||||| ||| | ||||||||||||||||||||| ||||||||||||||||
Sbjct 298 TCGAGTACAGCCGTCTTCT-TCTCAGAAGGGAAGATGGGGAAAATGTTGGAGTTTATATT 356
Query 319 CGTGTTTTGGAACTCAAAAGAACAATAAAAGGATTGGTAATGCTGTGCTTGTACCTGAAC 378
| |||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 357 CATGTTTTGGAACTCAGAAGAACAATAAAAGGATTGGTAATGCTGTGCTTGTACCTGAAC 416
Query 379 CGGTTGCATCTGGAGTTCCGGTTGTTACTGTTCAAAACTCAGCTACTTCAACTACAGTTG 438
||||| |||||||||||||||| |||||||||||||||||||||||||||||||| ||||
Sbjct 417 CGGTTACATCTGGAGTTCCGGTAGTTACTGTTCAAAACTCAGCTACTTCAACTACTGTTG 476
Query 439 TTCTTCCCTTTATAGCTCCTCCTTCATCTCCAGCTTCGTTTTTGCAATCCGATCCTTCAT 498
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct 477 TTCTTCCCTTTATAGCTCCTCCTTCATCTCCAGCTTCGTTTTTGCAATCGGATCCTTCAT 536
Query 499 CGGTTTCTCATTCGCCTGGTGGTCAACTTTCTCTTACTAGCAATACTTTTTCCCCTAAGG 558
|||||||||| ||||||| ||||| ||||||||||||||||||||| || || |||||||
Sbjct 537 CGGTTTCTCACTCGCCTGTTGGTCCACTTTCTCTTACTAGCAATACATTCTCGCCTAAGG 596
Query 559 AACCTCAGTCGGTCTTTACTGTTGGACCGTATGCTAATGAAACTCAACCTGTCACTCCTC 618
| ||||| || |||||||| |||||||| |||||||||||||||||||| ||||||||||
Sbjct 597 AGCCTCAATCTGTCTTTACCGTTGGACCTTATGCTAATGAAACTCAACCAGTCACTCCTC 656
Query 619 CGGTGTTCTCTGCGTTTATAACTGAACCATCTACTGCACCGTATACTCCGCCTCCGGAAT 678
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||||
Sbjct 657 CGGTGTTCTCTGCGTTTATAACTGAGCCATCTACTGCACCGTATACTCCACCTCCTGAAT 716
Query 679 CATCGGTTCATATAACTACTCCGTCTTCACCTGAAGTTCCCTTTGCTCAGTTGCTTACAT 738
|||| || ||||||||||| || |||||||||||||| |||||||||||||||||||| |
Sbjct 717 CATCAGTCCATATAACTACACCTTCTTCACCTGAAGTGCCCTTTGCTCAGTTGCTTACTT 776
Query 739 CTTCTTTGGAGCTAACTCGGAGGAATAGTAGTAGCGGGATGAATCAAAAGTTCTCGTCGT 798
|||| |||||||||||||||||| |||||| ||| ||||||||||||||||| ||||| |
Sbjct 777 CTTCGTTGGAGCTAACTCGGAGGGATAGTACTAGTGGGATGAATCAAAAGTTTTCGTCTT 836
Query 799 CGCACTATGAGTTTCGGTCTAATCAAGTGTGTCCGGGGAGTCCTGGTGGTGGTAATCTAA 858
||||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 837 CGCACTATGAGTTTCGGTCTAATCAGGTGTGTCCGGGGAGTCCTGGTGGTGGTAATCTAA 896
Query 859 TCTC-CCCTGGGTCAGTGATTTCAAACTCTGGTACATCTTCTCCTTACCCGGGTAAATCA 917
|||| ||| ||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 897 TCTCTCCC-GGGTCAGTGATTTCAAACTCTGGTACATCTTCTCCTTACCCTGGTAAATCA 955
Query 918 CCCATGGTTGAGTTTCGAATAGGCGAGCCTCCAAAGTTCTTAGGTTTTGAGCACTTCACA 977
||||||||||||||||||||||||||||||||||||||||| |||||||||||||| |||
Sbjct 956 CCCATGGTTGAGTTTCGAATAGGCGAGCCTCCAAAGTTCTTGGGTTTTGAGCACTTTACA 1015
Query 978 GCTCGTAAATGGGGATCGAGGTTTGGTTCTGGATCGATCACACCTGTTGGGCACGGTTCA 1037
||||||||||||||||||||||| ||||||||||||||||||||||||||||| ||||||
Sbjct 1016 GCTCGTAAATGGGGATCGAGGTTCGGTTCTGGATCGATCACACCTGTTGGGCATGGTTCA 1075
Query 1038 GGATTGGCTTCAGGCGCTCTGACACCAAATGGTTTAGAGATAATATCTGGAAACCTAACA 1097
|| |||||||||||||||||||||||||||||| ||||||| ||||||||||| |||||
Sbjct 1076 GGTTTGGCTTCAGGCGCTCTGACACCAAATGGTCCAGAGATAGTATCTGGAAACTTAACA 1135
Query 1098 CCCAGCAACACCACATGGCCTCTACAGAATCAGATCTCTGAGGTCGCGTCTCTAGCCAAT 1157
|||| ||| |||||||||||||| || |||||||||||||||||||| || || || |||
Sbjct 1136 CCCAACAATACCACATGGCCTCTTCAAAATCAGATCTCTGAGGTCGCTTCACTGGCAAAT 1195
Query 1158 TCGGATCACGGCTCTGAAGTCATTGTAGCAGATCACAGAGTTTCATTTGAGTTAACAGGA 1217
|||||||| |||||||||||||| |||||||||||||||||||| ||||||||||||||
Sbjct 1196 TCGGATCATGGCTCTGAAGTCATGGTAGCAGATCACAGAGTTTCGTTTGAGTTAACAGGT 1255
Query 1218 GAAGACGTTGCACGTTGTCTTGCAAGCAAGCTAAATCGATCACACGACAGAATGAACAAC 1277
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1256 GAAGACGTTGCACGTTGTCTTGCAAGCAAGCTAAATCGATCACACGACAGAATGAACAAC 1315
Query 1278 AATGATCGGATCGAAACAGAGGAGAGTTCATCAACAGACATAAGAAGAAACATGGAGAAA 1337
||||| ||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1316 AATGACCGGATCGAAACAGAGGAGAGTTCATCAACAGACATAAGAAGAAACATAGAGAAA 1375
Query 1338 CGGTTAGCAGATAGAGA-AACCGAACAGCAGAGAATTCAGAAGCTGAATTCCTCATCAAT 1396
||| || ||| ||||| ||| |||||||| |||||||||||||||| ||||||||| ||
Sbjct 1376 AGGTCAGGAGACAGAGAGAAC-GAACAGCATAGAATTCAGAAGCTGAGTTCCTCATCGAT 1434
Query 1397 TGGTTCTAGCAAAGAATTCAAATTCGACAACACGAAAGACGAGAATATCGAAAAGGTTGC 1456
||| |||||||||||||| |||||||||||||||||||||||||||||||| ||||||||
Sbjct 1435 TGGATCTAGCAAAGAATTTAAATTCGACAACACGAAAGACGAGAATATCGAGAAGGTTGC 1494
Query 1457 AGGAAACAGCTGGAGTTTCTTCCCGGGGTTACGATCTGGAGTCAGCTAACCAAATAAAAA 1516
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1495 AGGAAACAGCTGGAGTTTCTTCCCGGGGTTACGATCTGGAGTCAGCTAACCAAATTAAAA 1554
Query 1517 CGACGtctcttcttcttcttcttcAATCATTACCAAAGACAGATATA-AAAACCCTATTA 1575
||| |||||||||||||||| | ||||||||||||||||| ||| |||||||||| |
Sbjct 1555 TGACATCTCTTCTTCTTCTTC--C--TCATTACCAAAGACAGAGATATAAAACCCTAT-A 1609
Query 1576 AGTAACAAACCTT-ACACATGGATCGTGAAGAAAGGTAAGAGATTTGGGTTCTAACAACT 1634
||||||||||||| | |||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1610 AGTAACAAACCTTGA-ACATGGATCGTGAAAAAAGGTAAGAGATTTGGGTTCTAACAACT 1668
Query 1635 TATACACACTGAATAAATAAGCT-AAAGCTTTGGTTTGCAATTAACTTCTGTACTCATGT 1693
||||||||||||||||||||||| ||||||||| |||||| |||||||||||||||||||
Sbjct 1669 TATACACACTGAATAAATAAGCTTAAAGCTTTGATTTGCAGTTAACTTCTGTACTCATGT 1728
Query 1694 AGTTAGAAACTTGGGATTATTATTGGATCAGCTCCTACATATAATCTTGTT 1744
|||| ||||||| ||| |||| |||||||||||||||||| ||||||||||
Sbjct 1729 AGTTGGAAACTTTGGAATATTCTTGGATCAGCTCCTACATCTAATCTTGTT 1779
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 86244536310
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5