BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495315
Length=1017
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52460.1 | Symbols: EDA41 | FBD, F-box and Leucine Rich Repe... 638 0.0
> AT5G52460.1 | Symbols: EDA41 | FBD, F-box and Leucine Rich Repeat
domains containing protein | chr5:21292375-21293758 REVERSE
LENGTH=1110
Length=1110
Score = 638 bits (345), Expect = 0.0
Identities = 446/490 (91%), Gaps = 25/490 (5%)
Strand=Plus/Plus
Query 503 ATAAGCTTCGCTTTGGAAAGCCACATATCGACATTGTATGTCATACTGATGACAAGTTTC 562
||||||||||| ||| |||||||||||||||| |||||||||||||||||||||||||||
Sbjct 539 ATAAGCTTCGCCTTGAAAAGCCACATATCGACGTTGTATGTCATACTGATGACAAGTTTC 598
Query 563 TCAAAGCTATTTCCTTGGTCACGTTTCTTGTGTTGTTACCTTTGGAAGATCCAATGGCTC 622
|||||||||||||||||||||||| || | || |||||||||||||||||||||||||||
Sbjct 599 TCAAAGCTATTTCCTTGGTCACGTATC-T-TG-TGTTACCTTTGGAAGATCCAATGGCTC 655
Query 623 TGGATTTTAGTGGCTTTACCTTCTCTCGACTT-GAAAAGTTAGTGATATG------TGGC 675
|||||||| |||||||||||||| |||||||| ||||| ||||||||||| ||||
Sbjct 656 TGGATTTTCGTGGCTTTACCTTCACTCGACTTGGAAAA-TTAGTGATATGTCCACATGGC 714
Query 676 CGTATCTGGTTGGATATACTTCCACTAATTCTCAACAACTCTCCTAAACTAAG-TGTTCT 734
| | |||||||||||||| |||||||||||||||||||||||||||||||||| | ||||
Sbjct 715 CATCTCTGGTTGGATATAATTCCACTAATTCTCAACAACTCTCCTAAACTAAGAT-TTCT 773
Query 735 TGCTATCGCTTCTGTAAGTGGATATCTACCCGGAAATCTCCCAACGTCATGGTCCCAACC 794
||||||| ||||||||| |||||||| |||||||||||||||| |||||||| ||||||
Sbjct 774 TGCTATCACTTCTGTAA-TGGATATCGACCCGGAAATCTCCCATTGTCATGGTACCAACC 832
Query 795 AA-GTTTTGTTCCCAGATGCTTGTCGGCTCATTT--A-GAGGAGTTTTTGTGGCATGGAT 850
|| || ||||||||||||||||||||||||||| | ||||||||| ||||||||||||
Sbjct 833 AAGGTACTGTTCCCAGATGCTTGTCGGCTCATTTAGATGAGGAGTTTGTGTGGCATGGAT 892
Query 851 ATAGAGGAAACGAAGAAGAGACACAGCTCATAAGATACATTTTTGCTAATGCAAAGTGTT 910
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 893 ATAGAGGAAACGAAGAAGAGACACAGCTCATAAGATACATTTTTGCTAATGCAAAGTGTT 952
Query 911 TAAAGAAAGTGACAGTCACATTTATATGGGAACATATTCAAATATCCGCCTTCAATCTTG 970
||||||||||||||||||||| ||||||||||||| ||||| | | ||||||||||
Sbjct 953 TAAAGAAAGTGACAGTCACATCTATATGGGAACATTTTCAA-T--C----TTCAATCTTG 1005
Query 971 Aagagagaga 980
||||||||||
Sbjct 1006 AAGAGAGAGA 1015
Score = 424 bits (229), Expect = 1e-117
Identities = 259/274 (95%), Gaps = 0/274 (0%)
Strand=Plus/Plus
Query 151 GATGTTGGGAAATTAGTTGCAAATGTAGTTGATCGCTTTGTGCGCAAGCTAGAGCTAGAG 210
||||||||||||||||||||||||| |||||||||||||||||||||||||||| |||||
Sbjct 214 GATGTTGGGAAATTAGTTGCAAATGCAGTTGATCGCTTTGTGCGCAAGCTAGAGTTAGAG 273
Query 211 CTCCACTGGACGGCAGAGCCTAGCAGCTTGCCTAAGAATCTTTACACATGCAAAATGCTT 270
|||||||||||||||||||||| |||||||||||||| ||||||||||||||||| |||
Sbjct 274 CTCCACTGGACGGCAGAGCCTACCAGCTTGCCTAAGAGTCTTTACACATGCAAAACACTT 333
Query 271 GTGGAATTGACTCTTTCGGACAAGATTATAGTGGATGTTCCTTCTTCGATTTGTCTCCCG 330
|||||||||||||||||||||||||||||||||||||||||||||||| |||| ||||||
Sbjct 334 GTGGAATTGACTCTTTCGGACAAGATTATAGTGGATGTTCCTTCTTCGGTTTGCCTCCCG 393
Query 331 TCACTCAATATATTGCGCCTTTTTCATGTTGTGTTCAAAGATGAAGATTCTCTCGAGAGG 390
|||||||| ||||| ||||||||| |||| ||||||||||||||| ||||||| ||||||
Sbjct 394 TCACTCAACATATTACGCCTTTTTTATGTGGTGTTCAAAGATGAAAATTCTCTAGAGAGG 453
Query 391 CTTATATCAAGTTGCTCAGTTCTTGCTCGATCGA 424
|||||||||||||||||||||||||| |||||||
Sbjct 454 CTTATATCAAGTTGCTCAGTTCTTGCCCGATCGA 487
Score = 165 bits (89), Expect = 8e-40
Identities = 97/101 (96%), Gaps = 0/101 (0%)
Strand=Plus/Plus
Query 2 CCGAACGTTGTCAAAGAATTGATGAAGAGGTTGTTGCTTCTAAAGACGAGATCAATTTGT 61
|||||||||||||||||||||||||||||||||||||||||| ||||||||||| || ||
Sbjct 5 CCGAACGTTGTCAAAGAATTGATGAAGAGGTTGTTGCTTCTAGAGACGAGATCAGTTCGT 64
Query 62 TGCCCGACGATTTGCTCATCCAGATTTTGTTGCTTGTACCG 102
|||||||||||||||| ||||||||||||||||||||||||
Sbjct 65 TGCCCGACGATTTGCTTATCCAGATTTTGTTGCTTGTACCG 105
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 49832273824
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5