BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495317
Length=1104
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52470.1 | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibr... 1613 0.0
AT4G25630.1 | Symbols: FIB2, ATFIB2 | fibrillarin 2 | chr4:1307... 937 0.0
AT5G52490.1 | Symbols: | Fibrillarin family protein | chr5:212... 542 3e-153
> AT5G52470.1 | Symbols: FIB1, FBR1, ATFIB1, ATFBR1, SKIP7 | fibrillarin
1 | chr5:21294187-21296704 FORWARD LENGTH=1225
Length=1225
Score = 1613 bits (873), Expect = 0.0
Identities = 980/1032 (95%), Gaps = 5/1032 (0%)
Strand=Plus/Plus
Query 1 AAAATCCGCCACCACCGCACATCTCTTTCCTTTGCCTTCG-tttttttCGGTTCTCGTCT 59
|||||| ||||||||||||||||||| ||||||||| ||| |||||||||||||||||||
Sbjct 16 AAAATCAGCCACCACCGCACATCTCTCTCCTTTGCCCTCGTTTTTTTTCGGTTCTCGTCT 75
Query 60 TTCGTTCTTCACTTTTA-ACTCGCAAATATGAGACCACCACTTACaggaggacgtggtgg 118
||||||||||||||||| || |||||||||||||| ||| |||||||||||||||||||
Sbjct 76 TTCGTTCTTCACTTTTAGACAAGCAAATATGAGACCCCCAGTTACAGGAGGACGTGGTGG 135
Query 119 tggaggattcagaggaggaagagatggtggtggaagaggttttggaggtggaagaagCTT 178
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 136 TGGAGGATTCAGAGGTGGAAGAGATGGTGGTGGAAGAGGTTTTGGAGGTGGAAGAAGCTT 195
Query 179 TGGAGGAGG--G-CGTGGCGACAGAGGACGTGGTGGTCCTCGCGGCAGAGGACGTGGTGC 235
||||||||| | |||| |||||||| ||| |||| |||||||||||||||||||||||
Sbjct 196 TGGAGGAGGCCGTAGTGGTGACAGAGGCCGTAGTGGGCCTCGCGGCAGAGGACGTGGTGC 255
Query 236 GCCTCGTGGAAGAGGAGGACCACCACGTGGAGGAATGAAAGGAGGAAGCAAAGTGCTTGT 295
||||||||| | ||||||||||| |||||||||||||||||||||||||||||| ||||
Sbjct 256 GCCTCGTGGTCGTGGAGGACCACCTCGTGGAGGAATGAAAGGAGGAAGCAAAGTGATTGT 315
Query 296 TGAGCCTCACAGACACGCAGGAGTGTTTATTGCTAAGGGTAAAGAAGATGCTCTTGTTAC 355
||||||||||||||| || |||||||||||||||||||||||||||||||||||||| ||
Sbjct 316 TGAGCCTCACAGACATGCGGGAGTGTTTATTGCTAAGGGTAAAGAAGATGCTCTTGTCAC 375
Query 356 TAAGAATTTGGTTCCTGGTGAAGCTGTTTACAATGAGAAGAGGATCTCTGTTCAGAATGA 415
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 376 TAAGAATTTGGTTCCTGGTGAAGCTGTTTACAATGAGAAGAGAATCTCTGTTCAGAATGA 435
Query 416 AGATGGAACTAAGATTGAATACAGAGTTTGGAATCCTTTTAGATCTAAGTTAGCTGCTGC 475
||||||||||||| |||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 436 AGATGGAACTAAGGTTGAATACAGAGTTTGGAATCCGTTTAGATCTAAGTTAGCTGCTGC 495
Query 476 AATTCTTGGTGGTGTTGATAACATTTGGATCAAACCTGGTGCTAAAGTTCTTTACTTGGG 535
||||||||||||||| || ||||||||||||||||||||||| |||||||||||||||||
Sbjct 496 AATTCTTGGTGGTGTCGACAACATTTGGATCAAACCTGGTGCCAAAGTTCTTTACTTGGG 555
Query 536 TGCTGCTTCTGGAACCACTGTCTCTCATGTTTCTGACCTTGTTGGCCCTGAGGGATGTGT 595
|||||||||||| |||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 556 TGCTGCTTCTGGGACCACTGTCTCTCATGTTTCTGACCTCGTTGGCCCTGAGGGATGTGT 615
Query 596 TTATGCTGTTGAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAG 655
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct 616 TTATGCTGTTGAGTTTTCTCATAGAAGTGGTAGAGATTTGGTGAACATGGCCAAGAAGAG 675
Query 656 AACTAATGTTATTCCAATCATCGAAGATGCTAGACACCCTGCTAAGTACAGAATGCTTGT 715
|||||| |||||||||||||| |||||||||||||| || ||||||||||||||||| ||
Sbjct 676 AACTAACGTTATTCCAATCATTGAAGATGCTAGACATCCGGCTAAGTACAGAATGCTCGT 735
Query 716 GGGCATGGTTGATGTCATATTCTCTGATGTTGCTCAGCCAGATCAGGCAAGAATCTTGGG 775
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 736 GGGCATGGTTGATGTCATATTCTCTGATGTTGCTCAGCCAGATCAGGCAAGAATCTTGGC 795
Query 776 CCTCAATGCCTCATTTTTCCTCAAAACTGGTGGACACTTTGTTATCTCAATCAAGGCCAA 835
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 796 CCTGAATGCCTCATTTTTCCTCAAAACTGGTGGACACTTTGTTATCTCAATCAAGGCCAA 855
Query 836 CTGTATCGACTCTACGGTTGCAGCAGAAGCAGTGTTCCAGAGTGAGGTGAAGAAGCTGCA 895
||||||||||||||| ||||||||||||||||| |||||||| |||||||||||||||||
Sbjct 856 CTGTATCGACTCTACAGTTGCAGCAGAAGCAGTCTTCCAGAGCGAGGTGAAGAAGCTGCA 915
Query 896 ACAGGAGCAGTTTAAGCCAGCAGAACAGGTGACTCTAGAGCCGTTTGAGCGTGACCATGC 955
||| |||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct 916 ACAAGAGCAGTTTAAGCCAGCAGAACAGGTGACTCTCGAGCCGTTTGAGCGTGACCATGC 975
Query 956 CTGTGTTGTTGGTGGTTACCGCATGCCTAAGAAACAAAAGGCTCCAGCCACATAGAGCAA 1015
||||||||||||||||||||||||||| |||||||||||| | |||||| ||||||| ||
Sbjct 976 CTGTGTTGTTGGTGGTTACCGCATGCCGAAGAAACAAAAGACCCCAGCCTCATAGAGGAA 1035
Query 1016 CTGTGGACAGTA 1027
||||||||||||
Sbjct 1036 CTGTGGACAGTA 1047
> AT4G25630.1 | Symbols: FIB2, ATFIB2 | fibrillarin 2 | chr4:13074133-13076429
FORWARD LENGTH=1293
Length=1293
Score = 937 bits (507), Expect = 0.0
Identities = 663/740 (90%), Gaps = 4/740 (1%)
Strand=Plus/Plus
Query 261 CGTGGAGGAATGAAAGGAGGAAGCAAAGTGCTTGTTGAGCCTCACAGACACGCAGGAGTG 320
|||||||| ||||||||||||||||||||| |||| || |||||||||||||||||||||
Sbjct 317 CGTGGAGGCATGAAAGGAGGAAGCAAAGTGATTGTGGAACCTCACAGACACGCAGGAGTG 376
Query 321 TTTATTGCTAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATTTGGTTCCTGGTGAAGCT 380
|| ||||| ||||||||||||||||| |||||||| ||||||||||||||||||||||||
Sbjct 377 TTCATTGCAAAGGGTAAAGAAGATGCCCTTGTTACCAAGAATTTGGTTCCTGGTGAAGCT 436
Query 381 GTTTACAATGAGAAGAGGATCTCTGTTCAGAATGAAGATGGAACTAAGATTGAATACAGA 440
|| ||||| |||||||| |||||||||||||| ||||||||||| |||| ||||||||||
Sbjct 437 GTCTACAACGAGAAGAGAATCTCTGTTCAGAACGAAGATGGAACCAAGACTGAATACAGA 496
Query 441 GTTTGGAATCCTTTTAGATCTAAGTTAGCTGCTGCAATTCTTGGTGGTGTTGATAACATT 500
|||||||||||||| | || ||||| |||||||| |||||||||||||||||||||||
Sbjct 497 GTTTGGAATCCTTTCCGTTCGAAGTTGGCTGCTGCTATTCTTGGTGGTGTTGATAACATC 556
Query 501 TGGATCAAACCTGGTGCTAAAGTTCTTTA-CTTGGGTGCTGCTTCTGGAACCACTGTCTC 559
||||| |||||||||||||||||||| || ||| |||||||||||||||||||| |||||
Sbjct 557 TGGATTAAACCTGGTGCTAAAGTTCTATACCTT-GGTGCTGCTTCTGGAACCACAGTCTC 615
Query 560 TCATGTTTCTGACCTTGTTGGCCCTGAGGGATGTGTTTATGCTGTTGAGTTTTCTCATAG 619
|||||| ||||| ||||||||||||||||| ||||| || || |||||||||||||||||
Sbjct 616 TCATGTGTCTGATCTTGTTGGCCCTGAGGGGTGTGTGTACGCGGTTGAGTTTTCTCATAG 675
Query 620 AAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACTAATGTTATTCCAATCATCGA 679
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 676 AAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACCAATGTTATTCCAATCATCGA 735
Query 680 AGATGCTAGACACCCTGCTAAGTACAGAATGCTTGTGGGCATGGTTGATGTCATATTCTC 739
|||||||||||||| ||||| |||||||||||||| |||||||||||||| || |||||
Sbjct 736 GGATGCTAGACACCCAGCTAAATACAGAATGCTTGTAGGCATGGTTGATGTTATCTTCTC 795
Query 740 TGATGTTGCTCAGCCAGATCAGGCAAGAATCTTGGGCCTC-AATGCCTCATTTTTCCTCA 798
|||||||||||||||||||||||| || ||||||| | | ||||| |||| |||||||
Sbjct 796 TGATGTTGCTCAGCCAGATCAGGCTAGGATCTTGG-CTTTGAATGCATCATACTTCCTCA 854
Query 799 AAACTGGTGGACACTTTGTTATCTCAATCAAGGCCAACTGTATCGACTCTACGGTTGCAG 858
| | || ||||||||||| |||||||| ||||| |||||||||||||| || ||| |||
Sbjct 855 AGTCAGGAGGACACTTTGTGATCTCAATAAAGGCAAACTGTATCGACTCCACCGTTCCAG 914
Query 859 CAGAAGCAGTGTTCCAGAGTGAGGTGAAGAAGCTGCAACAGGAGCAGTTTAAGCCAGCAG 918
||||||| |||||||||| ||| ||||||||||| ||||||||||| || || ||||| |
Sbjct 915 CAGAAGCTGTGTTCCAGACTGAAGTGAAGAAGCTTCAACAGGAGCAATTCAAACCAGCTG 974
Query 919 AACAGGTGACTCTAGAGCCGTTTGAGCGTGACCATGCCTGTGTTGTTGGTGGTTACCGCA 978
| || ||||| || ||||| ||||||||||||||||| ||||| |||||||| ||||| |
Sbjct 975 AGCAAGTGACGCTTGAGCCATTTGAGCGTGACCATGCATGTGTCGTTGGTGGCTACCGTA 1034
Query 979 TGCCTAAGAAACAAAAGGCT 998
|||||||||| | |||||||
Sbjct 1035 TGCCTAAGAAGCCAAAGGCT 1054
> AT5G52490.1 | Symbols: | Fibrillarin family protein | chr5:21298857-21300239
FORWARD LENGTH=879
Length=879
Score = 542 bits (293), Expect = 3e-153
Identities = 598/741 (81%), Gaps = 38/741 (5%)
Strand=Plus/Plus
Query 267 GGAATGAAAGGAGGAAGCAAAGTGCTT-GTTGA-GCCTCACAGACACGCAGGAGTGTTTA 324
||||| || ||||||||||||||| || | ||| || ||||| |||||||||||||||
Sbjct 154 GGAATTAAGGGAGGAAGCAAAGTG-TTAG-TGACACCACACAGGCACGCAGGAGTGTTTG 211
Query 325 TTGCTAAGGGTAAAGAAGATGCTCTTGTTACTAAGAATTTGGTTCCTGGTG-AAGCTGTT 383
|||| || |||||| |||||||||||| || ||||| || |||||||||| || | ||
Sbjct 212 TTGCCAAAAGTAAAGCAGATGCTCTTGTAACCAAGAACTTAGTTCCTGGTGAAATC-ATT 270
Query 384 TACAATGAGAAGAGGATCTCTGTTCAGAATGAAGATGGAACTA-AGATTGAATACAGAGT 442
|||||||||||||| |||| ||||||||| ||||| || ||| | |||||||||||||
Sbjct 271 TACAATGAGAAGAGAATCTTTGTTCAGAACGAAGACCGATCTACTG-TTGAATACAGAGT 329
Query 443 TTGGAATCCTTTTAGATCTAAGTTAGCTGCTGCAATT-CTTGGTGGTGTTGATAACATTT 501
|||||| ||| ||||||||||||||||| ||| ||| | |||||||||||||||||
Sbjct 330 TTGGAACCCTCATAGATCTAAGTTAGCTGATGCTATTAC-CACTGGTGTTGATAACATTT 388
Query 502 GGATCAAACCTGGTGCTAAAGTTCTTTAC-TTGGGTGCTGCTTCTGGA-ACCACTGTCTC 559
||||||||||||||| ||||||||| ||| |||| |||| |||||||| || || || ||
Sbjct 389 GGATCAAACCTGGTGTTAAAGTTCTGTACCTTGG-TGCTTCTTCTGGATAC-ACCGTGTC 446
Query 560 TCATGTTTCTGACCTTGTTGGCCCTGAGGGATGTGTTTATGCTGTTGAGTTTTCTCATAG 619
|||||| |||||| ||||||| || |||||||||||||| ||||||||| |||| |||
Sbjct 447 TCATGTCTCTGACATTGTTGGTCCAGAGGGATGTGTTTACGCTGTTGAGCATTCTGATAT 506
Query 620 AAGTGGTAGAGATTTGGTGAACATGGCAAAGAAGAGAACTAATGTTATTCCAATCATCGA 679
|||||| || |||| |||||||||| ||||||||||||||||||| |||||||| ||
Sbjct 507 TTGTGGTAAAGTTTTGATGAACATGGCGGAGAAGAGAACTAATGTTATACCAATCATTGA 566
Query 680 AGATGCTAGACACCCTGCTAAGTACAGAATGCTTGTGGGCATGGTTGATGTCATATTCTC 739
|||||||||||| |||||||| || |||||||||||||| ||||||||| ||||||||||
Sbjct 567 AGATGCTAGACATCCTGCTAAATATAGAATGCTTGTGGGAATGGTTGATATCATATTCTC 626
Query 740 TGATGTTGCTCAGCCAGATCAGGC-AAGAATCTTGGGCCTCAATGCCTCATT-TTTCCTC 797
||||||| ||| || || || || || | | || | |||||||| || || |||||||
Sbjct 627 TGATGTTAATCACCCTGAGCAAGCTAACA-TATTAAGTCTCAATGCTTC-TTATTTCCTC 684
Query 798 AAAACTGGTGGACACTTTGTTATCTCAATCAAGGCCAACTGTATCGACTCTACGGTTGCA 857
||| |||| || |||||| | ||||| || ||||| || | ||| ||||| || |||||
Sbjct 685 AAATCTGGAGGGCACTTTATGATCTCTATAAAGGCGAATTCTATAGACTCAACAATTGCA 744
Query 858 GCAGAAGCAGTGT-TCCAGAGTG-AGGTGAAGAAGCTGCAACA-GGA-GCAGTTTA-AGC 912
|||||| | |||| || ||| || | ||| ||||| | ||| | ||| | |||| | | |
Sbjct 745 GCAGAAACTGTGTATC-AGA-TGGAAGTGGAGAAGTTACAA-ATGGAAG-AGTTGAGA-C 799
Query 913 CAGCAGA-ACAGGTG-ACTCTAGAGC-CGTT-TGAGCGTGAC-CATGCCTGTGTTGTTGG 967
|| |||| | | || | ||| || | | || |||| | | ||||| |||||| ||||
Sbjct 800 CAACAGAGATAT-TGCA-TCTTGA-CTC-TTGTGAG-GAAAAGCATGCTTGTGTTTTTGG 854
Query 968 TGGTTACCGCATGCCTAAGAA 988
||| || ||| |||||| |||
Sbjct 855 TGGATATCGCTTGCCTAGGAA 875
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 54116187510
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5