BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495319
Length=2190
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52510.1 | Symbols: SCL8 | SCARECROW-like 8 | chr5:21307049-... 2643 0.0
> AT5G52510.1 | Symbols: SCL8 | SCARECROW-like 8 | chr5:21307049-21309302
FORWARD LENGTH=2254
Length=2254
Score = 2643 bits (1431), Expect = 0.0
Identities = 1896/2107 (90%), Gaps = 85/2107 (4%)
Strand=Plus/Plus
Query 1 tctctctctctatttctcagagtatctaat-t-tctctcttctctctTTCCATATTATCA 58
||||||||| ||||||||||||||||||| | ||||||||||||| |||||||||||||
Sbjct 15 TCTCTCTCTAAATTTCTCAGAGTATCTAATCTCTCTCTCTTCTCTCGTTCCATATTATCA 74
Query 59 TGCGTTTC---A-T---T--A--TTTGGTAAt-t--t-ttttCTTTCTG-AGCTTTTGAG 102
|||||||| | | | | ||| | ||| | | | ||||||||| ||||||||||
Sbjct 75 TGCGTTTCATAATTCAGTAAATTTTTTGAAATCTGATCTGTTCTTTCTGAAGCTTTTGAG 134
Query 103 AG---AATAAAAAATGGAATCTGGTTTCTCCGGCGGCGGTGGTGGGTCGGA-TTTT-C-A 156
|| ||||||||||||||||||||||||||||||| |||||||||||||| |||| |
Sbjct 135 AGAATAATAAAAAATGGAATCTGGTTTCTCCGGCGGTGGTGGTGGGTCGGATTTTTACGG 194
Query 157 CGGTGGTGGTGGTAGATCTATACCTGGAGGTCCCGGAACTGTAATCAACGTTGGTAATAA 216
||||||||||||||||||||||||||||||||| |||||||| |||||||| ||||| ||
Sbjct 195 CGGTGGTGGTGGTAGATCTATACCTGGAGGTCCAGGAACTGTTATCAACGTCGGTAACAA 254
Query 217 TAATCCTCA-ACCGACGTATAGAAACCAAATTCCTGGAATCTTCCTTGATCAGATCGGAA 275
||||||||| | |||||||||||||||| ||||||||||||||| |||||||||||||||
Sbjct 255 TAATCCTCAGA-CGACGTATAGAAACCAGATTCCTGGAATCTTCTTTGATCAGATCGGAA 313
Query 276 ACAGAGTCTCCGCCGGTAATGGATTCGCCGGGAAACGTACTTTAGCAGATTTTCAAGCGG 335
|||||||| ||| ||||||||||||| |||||||| | ||||||||||||||||||||||
Sbjct 314 ACAGAGTCGCCGGCGGTAATGGATTCTCCGGGAAAAGGACTTTAGCAGATTTTCAAGCGG 373
Query 336 CTCAGCAATATcaacagcaacagcaacagcaacagcaacaacaacaacCGTTTTATAATC 395
||||| ||||| | | | | | | | | | |||||||||||||||||||||| ||
Sbjct 374 CTCAG------CAACATC-A-A-C-A-A-C-A-A-CAACAACAACAACCGTTTTATAGTC 418
Query 396 AAGCAGCTCTCAACGCTTTTCTTTTAAGGTCCGTGAAGCCTAGAAATTATCAGAATTTTC 455
|||||||||||||||||||||||| |||||| ||||||||| ||||||||||||||||||
Sbjct 419 AAGCAGCTCTCAACGCTTTTCTTTCAAGGTCTGTGAAGCCTCGAAATTATCAGAATTTTC 478
Query 456 AATCTCCGTCGCCGATGATCGATCTCACGTCGGTGAATGATATGAGTTTGTTTGGTGGTT 515
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 479 AATCTCCGTCGCCGATGATTGATCTCACGTCGGTGAATGATATGAGTTTGTTTGGTGGTT 538
Query 516 CTGGTTCGTCTCAGCGTTACGGTTCACCGGTTCTCAAGTCTCAGACGCAGCAGCATCAAT 575
||||||| |||||||||||||||| |||||||| || |||||||||||| ||||| ||||
Sbjct 539 CTGGTTCATCTCAGCGTTACGGTTTACCGGTTCCCAGGTCTCAGACGCAACAGCAACAAT 598
Query 576 CGAATTTCGGTTTATTTGGTGGGATCCGAATGGG-ATACGGGTCGAGTAATAATAA-CA- 632
|| ||| ||||||||||||||||||||||||||| || ||||||| ||| |||||| |
Sbjct 599 CGGATTACGGTTTATTTGGTGGGATCCGAATGGGAAT-CGGGTCGGGTATTAATAATTAT 657
Query 633 ACATGACGTTAACCGGCGTTCCTTGTATTGAACAGGTTCAGCATAACCGGGTTCATGAAT 692
|| || |||||||||||||| |||||||||| |||||| | ||||||||||||||||
Sbjct 658 CCA--ACATTAACCGGCGTTCCGTGTATTGAACCGGTTCA--A-AACCGGGTTCATGAAT 712
Query 693 CGGAGAACATGTTGAATAGTTTAAGAGAGCTAGAGAAACAGCTTTTAGATGATGACGATG 752
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 713 CGGAGAACATGTTGAATAGTTTAAGAGAGCTTGAGAAACAGCTTTTAGATGATGACGATG 772
Query 753 AGAGTGGTGGTGATGATGACGTGTCAGTTATCACAAATTCAAATTCCGATTGGATTCAAA 812
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 773 AGAGTGGTGGTGATGATGACGTGTCAGTTATAACAAATTCAAATTCCGATTGGATTCAAA 832
Query 813 ATCTCGTGACTCCGAACCCGAACCCGAACCCGGTTTTGTCTTTTTCACCGA-cttcttct 871
||||||||||||||||||||||||||||||||||||||||||||||||||| | ||||||
Sbjct 833 ATCTCGTGACTCCGAACCCGAACCCGAACCCGGTTTTGTCTTTTTCACCGAGC-TCTTCT 891
Query 872 tcttcgtcttcttc-ACTATCTACAGCTTCGACGACGACATCGGTATGTTC-ACGACAAA 929
|||||||||||||| || |||||||||||||||||||||||||||||||| | | ||||
Sbjct 892 TCTTCGTCTTCTTCGCCT-TCTACAGCTTCGACGACGACATCGGTATGTTCTA-GGCAAA 949
Query 930 CGGTTATGGAAATCGCGACGGCGATCGCGGAAGGGAAAACGGAGATAGCGACGGAGATTT 989
|||||||||||||||||||||||||||||||||||||||| |||||||||||||||||||
Sbjct 950 CGGTTATGGAAATCGCGACGGCGATCGCGGAAGGGAAAACAGAGATAGCGACGGAGATTT 1009
Query 990 TGGCGCGTGTTTCTCAGTCGCCGAATCTTGAGAGGAGTTCAGAGGAGAAGCTGGTTGAGT 1049
|||||||||||||||| |||| ||||||||||||| ||||||||||||||| ||||| |
Sbjct 1010 TGGCGCGTGTTTCTCAAACGCCTAATCTTGAGAGGAATTCAGAGGAGAAGCTTGTTGATT 1069
Query 1050 TCATGGTGACGGCGCTACGATCGCGGATTAATCAGGCTGAGAGTCTAGCTTCTCCGGCGA 1109
|||||||| | ||||| | | | || | ||| | |||||||||| | ||
Sbjct 1070 TCATGGTGGCTGCGCT----T--C-G----AT----C-GAG-G-ATAGCTTCTCCAGTGA 1111
Query 1110 CGGAATTGTATCGGAAGGAGCATTTAATCTCGACTCAATTGCTCAACGAGCTCTCTCCTT 1169
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 1112 CGGAATTGTATGGGAAGGAGCATTTAATCTCGACTCAATTGCTCTACGAGCTCTCTCCTT 1171
Query 1170 GTTACAAACTCGGTTTC-ACGGCGGCGAATCTCGCCATTCTCAACGCCGCCGGTAACAAC 1228
||| ||||||||||||| | ||| |||||||||||||||||| ||||||||| |||||||
Sbjct 1172 GTTTCAAACTCGGTTTCGA-GGCCGCGAATCTCGCCATTCTCGACGCCGCCGATAACAAC 1230
Query 1229 GACGCAGGGATGATGATGTTGCACGTTATCGATTTCGATATCGGAGAAGGTGGACAATAT 1288
|||| || |||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1231 GACGGTGGAATGATGATACCGCACGTTATCGATTTCGATATCGGAGAAGGTGGACAATAC 1290
Query 1289 GTTAACCTTCTCCAAACACTCTCCACGCGCCGGAATGGTAAGAA-TCAGAATCAGAATTC 1347
||||||||||||| ||| | |||||||||||||||||||| || ||||| |||||||||
Sbjct 1291 GTTAACCTTCTCCGTACATTATCCACGCGCCGGAATGGTAA-AAGTCAGAGTCAGAATTC 1349
Query 1348 TCCGGTGGTTAAGATCACAGCCGTGACGAACAACGTCTACGGATTTTTGGTCGATGGCGG 1407
|||||||||||||||||| |||||| |||||||||| ||||||| ||| ||||||| |||
Sbjct 1350 TCCGGTGGTTAAGATCACCGCCGTGGCGAACAACGTTTACGGATGTTTAGTCGATGACGG 1409
Query 1408 TGGAGAAGAGAGGTTGAAAGTCGTCGGAGATCTGTTGAGCCAACTCGGTAATCGACTCGG 1467
||||||||||||||| |||| |||||||||| ||||||||||||||||| ||||||||||
Sbjct 1410 TGGAGAAGAGAGGTTAAAAGCCGTCGGAGATTTGTTGAGCCAACTCGGTGATCGACTCGG 1469
Query 1468 TATCTCCGTGAGTTTCAACGTGGTGGCGAGTTTACGACTCGGTGATCTGAGTCGTGAATC 1527
||||||||| ||||||||||||||| |||||||||||||||||||||||| |||||||||
Sbjct 1470 TATCTCCGTAAGTTTCAACGTGGTGACGAGTTTACGACTCGGTGATCTGAATCGTGAATC 1529
Query 1528 GCTCGGGTGTGATCCCGACGAGCCGTTGGCCGTGAACTTAGCTTTCAAGCTTTATCGTGT 1587
||||||||||||||||||||| | ||||| |||||||||||||||||||||||||||||
Sbjct 1530 TCTCGGGTGTGATCCCGACGAGACTTTGGCTGTGAACTTAGCTTTCAAGCTTTATCGTGT 1589
Query 1588 TCCCGACGAAAGCGTATGCACAGAGAATCCGAGAGACGAGCTTCTCCGGCGCGTGAAGGG 1647
||||||||||||||||||||| |||||||| |||||||| ||||||||||||||||||||
Sbjct 1590 TCCCGACGAAAGCGTATGCACGGAGAATCCAAGAGACGAACTTCTCCGGCGCGTGAAGGG 1649
Query 1648 ACTTAAGCCGCGCGTGGTGACTTTAGTGGAACAAGAAATGAATTCTAATACGGCACCGTT 1707
|||||| ||||||||||| ||| ||||||| |||||||||||||| |||||||| |||||
Sbjct 1650 ACTTAAACCGCGCGTGGTTACTCTAGTGGAGCAAGAAATGAATTCGAATACGGCGCCGTT 1709
Query 1708 TTTAGGGCGAGTGAGTGAGTCATGCGCGTGTTACGGTGCATTGCTTGACTCGGTCGAGTC 1767
||||||| ||||||||||||||||||||||||||||||| |||||||| |||||||||||
Sbjct 1710 TTTAGGGAGAGTGAGTGAGTCATGCGCGTGTTACGGTGCGTTGCTTGAGTCGGTCGAGTC 1769
Query 1768 GACCGTTCCTAGTTTGAATTCGGACCGCGTCAAGGTCGAGGAAGGAATTGGCCGGAAGCT 1827
|| ||||||||| |||||| ||||| | ||| || |||||||||||||||||||||||
Sbjct 1770 TACGGTTCCTAGTACGAATTCCGACCGTGCCAAAGTTGAGGAAGGAATTGGCCGGAAGCT 1829
Query 1828 AATAAACGCGGTGGCGTGCGAAGGAATCGATCGGATTGAGCGGTGCGAGGTTTTCGGGAA 1887
| ||||||||||||||||||||||||||||||| || |||||||||||||| ||||||||
Sbjct 1830 AGTAAACGCGGTGGCGTGCGAAGGAATCGATCGTATAGAGCGGTGCGAGGTGTTCGGGAA 1889
Query 1888 ATGGCGAATGCGGATGAGCATGGCTGGGTTCGAGTTAATGCCATTGAGTGAGAAGATAGC 1947
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 1890 ATGGCGAATGCGGATGAGCATGGCTGGGTTTGAGTTAATGCCATTGAGTGAGAAGATAGC 1949
Query 1948 TGA-CCGACTCAATA-AC--GGAAACCTAGCT-CACCCGGGCTTTACCGTTAAAGAAGAT 2002
|| ||| | || | | ||||||| || | |||||||||||||||||||||||||||
Sbjct 1950 GGAGTCGA-TGAAGAGTCGTGGAAACCGAG-TCCACCCGGGCTTTACCGTTAAAGAAGAT 2007
Query 2003 AACGGAGGTGTGTGCTTTGGTTGGATGGGACGGACACTCGCTGTCGCATCCGCTTGGCGT 2062
||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||||
Sbjct 2008 AACGGAGGTGTGTGCTTTGGTTGGATGGGACGGGCACTCACTGTCGCATCCGCTTGGCGT 2067
Query 2063 TAATTTC 2069
||| |||
Sbjct 2068 TAACTTC 2074
Score = 187 bits (101), Expect = 4e-46
Identities = 124/134 (93%), Gaps = 6/134 (4%)
Strand=Plus/Plus
Query 2062 TTAA-TTTCGAGGATTATTCTGATAATATTATCATTGTGATTTTCCATTTCGAAAAGTGT 2120
|||| |||||| ||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2115 TTAATTTTCGA-GATTATTCTGATATTATTATCATTGTGATTTTCCATTTCGAAAAGTGT 2173
Query 2121 AGGAATCTTATGTAACAAAGaaaaaaaa----CTTTTATATTTTACTAATAATAAAAGAA 2176
|||||||||||||||||||||||||||| ||||||| |||| |||||||||||||||
Sbjct 2174 AGGAATCTTATGTAACAAAGAAAAAAAAAAGACTTTTATGTTTTTCTAATAATAAAAGAA 2233
Query 2177 AGAATGATTGGGTT 2190
||| ||||||||||
Sbjct 2234 AGAGTGATTGGGTT 2247
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 108633979380
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5