BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495320
Length=1972
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52520.1 | Symbols: OVA6, PRORS1 | Class II aaRS and biotin ... 3009 0.0
> AT5G52520.1 | Symbols: OVA6, PRORS1 | Class II aaRS and biotin
synthetases superfamily protein | chr5:21311063-21314180 FORWARD
LENGTH=1986
Length=1986
Score = 3009 bits (1629), Expect = 0.0
Identities = 1877/1992 (94%), Gaps = 35/1992 (2%)
Strand=Plus/Plus
Query 1 AAAAGGAAAAAACCACAAAACTTCTCTGAAAAGTAGATAAATGGTG--G-CGTCTCTGAG 57
|||| |||||||||||||||||||||||||| || ||||||||||| | ||||||||||
Sbjct 10 AAAAAGAAAAAACCACAAAACTTCTCTGAAAGGTGGATAAATGGTGTCGTCGTCTCTGAG 69
Query 58 ACTCCCTTCTCTCACTTCCCTTTTATTTCCCGCCACCACTCGTTACCCAGCTTCTCTCCG 117
||||||||| |||||||| ||| |||||||||||||||||||||| ||||| |||||||
Sbjct 70 ACTCCCTTCACTCACTTCGCTTCTATTTCCCGCCACCACTCGTTATCCAGCCACTCTCCG 129
Query 118 GCGAGCCGTATGTCTACGGAACAGACCTCTTTCCGGATTCGCGACGGCGCCGAGTGGTAC 177
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 130 GCGAACCGTATGTCTACGGAACAGACCTCTTTCCGGATTCGCGACGGCGCCGAGTGGTAC 189
Query 178 TGCTTCGCCGGAGACTAAGTCCACGGAGGTTGACCGGCTTAGGTCAGACCGAGCCGTTAC 237
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 190 TGCTTCGCCGGAGACTAAGTCGTCGGAGGTTGACCGGCTTAGGTCAGACCGAGCCGTTAC 249
Query 238 GCCTCGCTCACAGGACTTTAATGCGTGGTATCTTGATGTTATAGCTAGTGCTGAACTCGC 297
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct 250 GCCTCGCTCACAGGACTTTAATGCTTGGTATCTTGATGTTATAGCTAGTGCTGAACTCGC 309
Query 298 CGATTATGGTCCGGTTCGTGGTACTATGGTTATTCGTCCTTATGGTTACGCGATCTGGGA 357
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 310 GGATTATGGTCCGGTTCGTGGTACTATGGTCATTCGTCCTTATGGTTACGCGATCTGGGA 369
Query 358 AGCGATTCAGGAGTATTTGAATGTGAAGTTCAAAGAGACTGGTCATAGCAACATGTATTT 417
|||||||||||| |||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 370 AGCGATTCAGGATTATTTGAATGTGAAGTTCAAAGAGACTGGTCATAGCAACATGTACTT 429
Query 418 CCCACAGTTTATACCATACTCTTTTATTGAGAAAGAAGCTTCACATGTTGAGGGGTTTAG 477
||||||||||||||||||||| ||||||||||||||||||||||| |||||||| |||||
Sbjct 430 CCCACAGTTTATACCATACTCGTTTATTGAGAAAGAAGCTTCACACGTTGAGGGATTTAG 489
Query 478 TCCTGAACTAGCCCTTGTTACTGTGGGAGGAGGAAAAGAACTTGAGGAGAAGCTTGTGGT 537
|||||||||||| ||||||||||| |||||||||||||||||||||||||| ||||||||
Sbjct 490 TCCTGAACTAGCTCTTGTTACTGTTGGAGGAGGAAAAGAACTTGAGGAGAAACTTGTGGT 549
Query 538 TCGGCCTACCAGTGAAACCATAGTGAATCACATGTTTACCCAGTGGATTCACAGCTATCG 597
||||||||| |||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct 550 TCGGCCTACTAGTGAAACCATAGTGAATCATATGTTTACCCAGTGGATTCACAGCTATCG 609
Query 598 TGATCTTCCTCTTATGATCAATCAGTGGGCCAATGTCACTAGATGGGAGATGCGGACAAA 657
|||||||||||| ||||| ||||||||||||||||||||||||||||| |||||||| ||
Sbjct 610 TGATCTTCCTCTCATGATTAATCAGTGGGCCAATGTCACTAGATGGGAAATGCGGACGAA 669
Query 658 ACCATTTATTAGGACTCTTGAGTTTCTATGGCAAGAGGGTCATACTGCTCATGCCACTCC 717
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 670 ACCATTTATTAGGACTCTTGAATTTCTATGGCAAGAGGGTCATACTGCTCATGCCACTCC 729
Query 718 TGAGGAGGCAGAAAAGGAGGCAAAACAGATGATCGAGATCTACACCAGATTTGCTTTTGA 777
||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 730 TGAGGAGGCAGAAAAGGAGGCGAAACAGATGATCGAGATCTACACCAGATTTGCTTTTGA 789
Query 778 GCAAACTGCAATACCTGTTATTCCAGGTCGAAAATCTAAA-TTAGAGACTTTTGCTGGTG 836
|||||||||||| ||||||||||||||||||||||| ||| |||||||||||||||||||
Sbjct 790 GCAAACTGCAATTCCTGTTATTCCAGGTCGAAAATC-AAAGTTAGAGACTTTTGCTGGTG 848
Query 837 CTGATATAACCTATACTATTGAGGCTATGATGGGAGATCGGAAGGCTTTGCAGGCTGGTA 896
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 849 CTGATATAACCTATACTATTGAGGCTATGATGGGAGATCGGAAGGCTTTGCAGGCTGGTA 908
Query 897 CTAGCCACAATTTAGGGCAGAACTTTTCTCGTGCCTTTGGAACTCAGTTTGCAGATGAGA 956
|||||||||||||||| |||||||||||||||||||||||||||||||||||||||||||
Sbjct 909 CTAGCCACAATTTAGGCCAGAACTTTTCTCGTGCCTTTGGAACTCAGTTTGCAGATGAGA 968
Query 957 ATGGAGAAAGGCAACATGTGTGGCAGACATCATGGGCAGTCAGTACACGTTTTGTCGGTG 1016
||||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 969 ATGGAGAAAGGCAACATGTGTGGCAGACATCATGGGCAGTCAGTACACGTTTTGTTGGTG 1028
Query 1017 GCATTATCATGACTCACGGAGATGACACTGGTCTCATGCTTCCTCCCAAGATAGCTCCAA 1076
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1029 GCATTATCATGACTCACGGAGATGACACTGGTCTCATGCTTCCTCCCAAGATAGCTCCAA 1088
Query 1077 TACAGGTAGTAATTGTACCTATCTGGAAAAAGGACACTGAGAAAACAGGAGTTCTCAGTG 1136
|||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 1089 TACAGGTAGTAATTGTACCTATTTGGAAAAAGGACACTGAGAAAACAGGAGTTCTCAGTG 1148
Query 1137 CTGCATCATCAGTGAAGGAAGCTCTCCAAACTGCTGGGGTTAGAGTTAAACTTGATGACA 1196
|||||||||||||||| |||||||||||||||||||| ||||||||||||||||||||||
Sbjct 1149 CTGCATCATCAGTGAAAGAAGCTCTCCAAACTGCTGGTGTTAGAGTTAAACTTGATGACA 1208
Query 1197 CAGATCAACGAACCCCAGGATGGAAGTTCAATTTCTGGGAAATGAAGGGAATCCCTCTAA 1256
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1209 CAGATCAAAGAACCCCAGGATGGAAGTTCAATTTCTGGGAAATGAAGGGAATCCCTCTAA 1268
Query 1257 GGATTGAAATTGGTCCACGCGATGTATCTAGTAACTCTGTGGTTGTCTCGAGGAGGGATA 1316
||||||||||||||||||||||||||||||||||| ||| || |||||||||||||||
Sbjct 1269 GGATTGAAATTGGTCCACGCGATGTATCTAGTAACAGTGTCGTAGTCTCGAGGAGGGATG 1328
Query 1317 TACCAGGAAAGGCAGGAAAAGTTTTTGGAATATCAATGGAGCCATCAACATTAGTGGCGT 1376
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1329 TACCAGGAAAGGCAGGAAAAGTTTTTGGAATATCAATGGAGCCATCAACATTAGTGGCGT 1388
Query 1377 ATGTAAAAGAGAAGTTGGATGAGATCCAATCATCGCTTTTAGAAAAGGCTTTATCATTCA 1436
||||||||||||||||||||||||||||| |||| ||| |||| ||||| ||||||||||
Sbjct 1389 ATGTAAAAGAGAAGTTGGATGAGATCCAAACATCTCTTCTAGAGAAGGCGTTATCATTCA 1448
Query 1437 GAGATAGCAACATTGTGGATGTAAACTCATACGATGAGCTCAAAGACGCCATTTCTTCAG 1496
|||| || ||||||||||||||||||||||||| ||||||||||||||| ||||| ||||
Sbjct 1449 GAGACAGTAACATTGTGGATGTAAACTCATACGCTGAGCTCAAAGACGCAATTTCATCAG 1508
Query 1497 GGAAATGGGCAAGAGGTCCTTGGTCAGCCAGTGACGCAGATGAGCAAAGAGTAAAAGAAG 1556
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1509 GGAAATGGGCAAGAGGTCCTTGGTCAGCCAGTGACGCAGATGAGCAAAGAGTAAAAGAAG 1568
Query 1557 AAACAGGAGCAACCATTCGTTGTTTCCCGTTTGAACAAACTCAAGGGACCAAAACATGTC 1616
|||| ||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1569 AAACCGGAGCAACCATTCGTTGTTTCCCGTTTGAACAAACTCAAGGGACCAAAACATGCC 1628
Query 1617 TAATGACTGGAAATCCAGCAGAAGAAGTTGCTATCTTTGCCAAGTCATACTAAAGAAGGT 1676
||||||||||||||||||||||||||||||| ||||||||||||||||| |||| ||||
Sbjct 1629 TAATGACTGGAAATCCAGCAGAAGAAGTTGCAATCTTTGCCAAGTCATATTAAACTAGGT 1688
Query 1677 CCTTTCACTTTCACACATTTCCCAATCATATCAA-TTCTATTTATTAAAAAGGTCCAAAA 1735
| || |||||||||||||| |||||||||||||| |||| ||||||||||||||||||||
Sbjct 1689 CGTTACACTTTCACACATT-CCCAATCATATCAAATTCTCTTTATTAAAAAGGTCCAAAA 1747
Query 1736 GTGACAATAGATTCTGTTTCCGTGGTTATTGGAGTGGAGTGATTGTAGTCCTTTGGTCAG 1795
|||||| ||| |||| ||||||||| |||||||||||| | ||||||||||||||||||
Sbjct 1748 GTGACATTAGTTTCTATTTCCGTGGCTATTGGAGTGGAATAATTGTAGTCCTTTGGTCA- 1806
Query 1796 ATCTATGGACTATCTCTGGTAGTACAGAATTAGATGCTACTTTGGTCGGAGATGCTTTTG 1855
| || || ||||||||||||||||||| |||||||||||||||||||| |
Sbjct 1807 -TGGATC--CT--CTCTGGTAGTACAGAATTAAATGCTACTTTGGTCGGAGATTCC---- 1857
Query 1856 ATGAATTCATATTTTGTTTTGTTTCGCAATTGCAATACAATATGTTGACTTTTCATTTAT 1915
| | |||||||||||||||||| ||||| ||||||| |||| |||||||||||||||||
Sbjct 1858 A--A-TTCATATTTTGTTTTGTTACGCAAGTGCAATATAATACGTTGACTTTTCATTTAT 1914
Query 1916 T-TT-T-G------------ATAGTTTAATGTGGAAAAATAACAAAAATCTCATTTTGCT 1960
| || | | ||||||||||||| ||||||||||||||| ||||||||||
Sbjct 1915 TGTTATTGTCTTTGTCTTTGATAGTTTAATGTGAAAAAATAACAAAAATATCATTTTGCT 1974
Query 1961 ATCGACTTCGTT 1972
||||||||||||
Sbjct 1975 ATCGACTTCGTT 1986
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 97690260570
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5