BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495327
Length=2206
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52560.1 | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase... 3290 0.0
> AT5G52560.1 | Symbols: ATUSP, USP | UDP-sugar pyrophosphorylase
| chr5:21330639-21334811 FORWARD LENGTH=2375
Length=2375
Score = 3290 bits (1781), Expect = 0.0
Identities = 2046/2170 (94%), Gaps = 34/2170 (2%)
Strand=Plus/Plus
Query 65 AACAAAACACATAA-TTTGGTTCGGTCTTCTTCTTCAATTTTCACCGACAGAAACCCGTC 123
|||||||||||||| |||||||||| |||||||||||||||||||||| |||||||||
Sbjct 117 AACAAAACACATAATTTTGGTTCGG---TCTTCTTCAATTTTCACCGACACAAACCCGTC 173
Query 124 TTTTCCTCTTCTCTCTCTCATTTCTATCAA-TTTTCTCGACAATTCCCCAGTCGTCGAAG 182
|||||||| | ||||||||||||||||||| ||||||| |||||||||||||||||||||
Sbjct 174 TTTTCCTC-T-TCTCTCTCATTTCTATCAATTTTTCTCTACAATTCCCCAGTCGTCGAAG 231
Query 183 AAGCTACAGCTTGCAATTTGCTCGTGTTCTCTTCCATCGTTCC-----AAAAAGCCTTTT 237
|||||||||||||||||||||||||||||||||||||| |||| || ||||| ||
Sbjct 232 AAGCTACAGCTTGCAATTTGCTCGTGTTCTCTTCCATCATTCCTTTGTTAAGAGCCTCTT 291
Query 238 CATGGCTTCCACGGTTGATTCCAATATCTTCTCATCCGTCCCAGCTCTTCAGAGAAACCT 297
||||||||| ||||||||||||||| ||||||||||||||||||||||||| || |||||
Sbjct 292 CATGGCTTCTACGGTTGATTCCAATTTCTTCTCATCCGTCCCAGCTCTTCACAGTAACCT 351
Query 298 CGGAATTTTGTCTCCTGATCAGATCGAATTGGCGAAGATCTTATTGGAAAATGGTCAGAG 357
|||| ||||||||||||||||||||||| |||||||||||||||| ||||||||||||||
Sbjct 352 CGGACTTTTGTCTCCTGATCAGATCGAACTGGCGAAGATCTTATTAGAAAATGGTCAGAG 411
Query 358 TCATCTCTTCCAGCAATGGCCTCAACTTGGCGTTGATGACAAACAGAAACTAGATTTTTT 417
|||||||||||| ||||||||| |||| || |||||||| ||| |||| |||| ||||||
Sbjct 412 TCATCTCTTCCAACAATGGCCTGAACTCGGTGTTGATGATAAAGAGAAGCTAGCTTTTTT 471
Query 418 CGATCAGATTGCTCGCTTAAATTCAAGTTATCCTGGGGGTTTAGCGGCATACATTAAGAC 477
||||||||||||||||||||||||||| |||||||| |||||||| ||||||||||||||
Sbjct 472 CGATCAGATTGCTCGCTTAAATTCAAGCTATCCTGGAGGTTTAGCAGCATACATTAAGAC 531
Query 478 TGCGAAAGAGCTTCTCGCTGATTCGAAATTAGGGAAGAACCCATATGATGGTTTCTCTCC 537
|||||||||||||||||||||||||||| ||||||| |||||||||||||||||||||||
Sbjct 532 TGCGAAAGAGCTTCTCGCTGATTCGAAAGTAGGGAAAAACCCATATGATGGTTTCTCTCC 591
Query 538 TTCTGTTCCTTCAGGAGAAAATCTTACTTTTGGTAATGAGAACTTCATCGAAATGGAAAA 597
|||||| ||||||||||||||||| |||||||||| ||| ||||||||||||||||||||
Sbjct 592 TTCTGTCCCTTCAGGAGAAAATCTCACTTTTGGTACTGACAACTTCATCGAAATGGAAAA 651
Query 598 AAGAGGTGTCGTCGAAGCTAGGAATGCCGCTTTTGTTCTTGTTGCTGGTGGTCTTGGCGA 657
||||||||||||||||||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 652 AAGAGGTGTCGTCGAAGCTAGGAATGCTGCTTTTGTTCTGGTTGCTGGTGGTCTTGGCGA 711
Query 658 GCGTCTTGGTTACAATGGAATCAAGGTGGCACTTCCAAGAGAGACAACTACTGGGATATG 717
||||||||||||||||||||||||||||||||||||||| ||||||||||| |||| |||
Sbjct 712 GCGTCTTGGTTACAATGGAATCAAGGTGGCACTTCCAAGGGAGACAACTACAGGGACATG 771
Query 718 CTTCTTGCAGCACTACATTGAATCTATATTGGCTCTTCAAGAAGCTAGCAACAAGATCGC 777
|||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 772 CTTCTTGCAGCATTACATTGAATCTATATTGGCTCTTCAAGAAGCTAGCAACAAGATCGA 831
Query 778 TTCTGATGAAAGTCAGAGAGACATTCCTTTCATTATTATGACATCTGATGATACACATTC 837
|||||||| |||| |||||||||||||||||||||||||||||||||||||||| |||||
Sbjct 832 TTCTGATGGAAGTGAGAGAGACATTCCTTTCATTATTATGACATCTGATGATACTCATTC 891
Query 838 ACGTACACTGGAGCTATTAGAGTTAAACTCTTATTTTGGGATGAAACCTACTCAAGTACA 897
|||||||||||| || ||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 892 ACGTACACTGGACCTGTTAGAGTTAAACTCTTATTTTGGAATGAAACCTACTCAAGTACA 951
Query 898 TCTTTTAAAACAGGAAAAAGTTGCATGTCTTGATGATAATGACGCCAGGCTTGCATTAGA 957
|||| |||||||||||||||||||||||||||||||||| || ||||| |||||||||||
Sbjct 952 TCTTCTAAAACAGGAAAAAGTTGCATGTCTTGATGATAACGATGCCAGACTTGCATTAGA 1011
Query 958 CCCCCACAACAAATACAGTATCCAGACAAAACCTCATGGACATGGCGATGTACATTCACT 1017
||| ||||||||||||||||||||||||||||||||||||||||| ||||||||||| ||
Sbjct 1012 CCCTCACAACAAATACAGTATCCAGACAAAACCTCATGGACATGGTGATGTACATTCGCT 1071
Query 1018 TCTATATTCCAGTGGCCTTCTTCATAAATGGCTTG-GTGCTGGTTTAAAATGGGTTTTGT 1076
||| ||||||||||||||||||||||||||||||| | ||||||||||||||||||||||
Sbjct 1072 TCTTTATTCCAGTGGCCTTCTTCATAAATGGCTTGAG-GCTGGTTTAAAATGGGTTTTGT 1130
Query 1077 TTTTCCAAGATACAAATGGTCTTCTCTTCAATGCAATTCCAGCTTCTTTGGGTGTGAGTG 1136
||||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct 1131 TTTTCCAAGATACAAATGGACTTCTCTTCAATGCAATTCCAGCTTCTTTGGGTGTGAGTG 1190
Query 1137 CTACCAAACAGTATCATGTTAACTCTCTTGCTGTTCCCCGTAAGGCGAAGGAAGCTATTG 1196
|||||||||||||||||||||||||||| |||||||| || |||||||||||||||||||
Sbjct 1191 CTACCAAACAGTATCATGTTAACTCTCTCGCTGTTCCTCGCAAGGCGAAGGAAGCTATTG 1250
Query 1197 GAGGAATTACTAAACTTACTCACGTTGATGGCAGATCTATGGTAATCAATGTGGAGTACA 1256
||||||||| ||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1251 GAGGAATTAGTAAACTTACTCACGTTGATGGGAGATCTATGGTAATCAATGTGGAGTACA 1310
Query 1257 ATCAACTTGATCCTCTACTTAGAGCATCTGGATTCCCTGATGGAGATGTTAATTGTGAGA 1316
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||
Sbjct 1311 ATCAACTTGATCCTCTACTTAGAGCATCTGGATTCCCTGATGGGGATGTTAATTGTGAGA 1370
Query 1317 CAGGCTTTTCGCCATTCCCGGGAAATATTAATCAATTGATTCTGGAACTTGGTCCCTACA 1376
| ||||| || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1371 CGGGCTTCTCCCCATTCCCGGGAAATATTAATCAATTGATTCTGGAACTTGGTCCCTACA 1430
Query 1377 AAGACGAGTTGCAAAAAACTGGAGGGGCCATCAAAGAGTTTGTTAATCCAAAATACAAGG 1436
||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||
Sbjct 1431 AAGACGAGTTGCAAAAAACTGGAGGGGCCATTAAAGAGTTTGTTAATCCAAAATACAAGG 1490
Query 1437 ATAGCACCAAAACAGCGTTTAAATCTTCAACTCGTCTAGAGTGTATGATGCAAGATTATC 1496
|||||||||||||||| ||||||||||| |||||||||||||||||||||||||||||||
Sbjct 1491 ATAGCACCAAAACAGCATTTAAATCTTCGACTCGTCTAGAGTGTATGATGCAAGATTATC 1550
Query 1497 CAAAGACATTGCCTCCAACTGCACGAGTTGGATTCACGGTGATGGATATATGGCTTGCTT 1556
|||||||||||||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct 1551 CAAAGACATTGCCTCCTACGGCACGAGTTGGATTCACGGTGATGGATATATGGCTTGCTT 1610
Query 1557 ATGCACCCGTCAAGAATAATCCTGAGGATGCTGCTAAGGTACCTAAGGGAAATCCATATC 1616
|||||||||| |||||||| ||||| ||||||||||||||||| |||||||| |||||||
Sbjct 1611 ATGCACCCGTAAAGAATAACCCTGAAGATGCTGCTAAGGTACCAAAGGGAAACCCATATC 1670
Query 1617 ACAGTGCAACTTCTGGAGAAATGGCGATTTATCGTGCTAACAGCCTCATTCTTCAAAAGG 1676
| ||||| ||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1671 ATAGTGCTACTTCTGGAGAAATGGCGATTTATCGTGCTAACAGCCTCATTCTTCAAAAGG 1730
Query 1677 CTGGTGTCAAAGTGGAAGAGCCTGTAAAGCAGGTCTTGAATGGCCAAGAGGTTGAAGTAT 1736
||||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||
Sbjct 1731 CTGGTGTCAAAGTGGAAGAGCCTGTGAAGCAAGTCTTGAATGGCCAAGAGGTTGAAGTAT 1790
Query 1737 GGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCTGATATCAAAAAGAAAG 1796
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1791 GGTCTCGTATCACATGGAAACCCAAATGGGGAATGATCTTCTCTGATATCAAAAAGAAAG 1850
Query 1797 TCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGCAATCAAGGGTCGTAATGTTT 1856
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct 1851 TCAGCGGGAACTGCGAGGTCTCTCAGAGATCCACAATGGCAATCAAGGGTCGTAATGTAT 1910
Query 1857 TTATTGAAGATCTCTCCTTGGACGGTGCTCTTATTGTAGATTCCATTGATGAAGCAGAGG 1916
|||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 1911 TTATCAAAGATCTCTCCTTGGACGGTGCTCTTATTGTAGATTCCATTGATGATGCAGAGG 1970
Query 1917 TTAAACTTGGAGGTTTGATAAAGAACAATGGTTGGACCATGGAGAGTGTAGATTACAAGG 1976
| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1971 TAAAACTTGGAGGTTTGATAAAGAACAATGGTTGGACCATGGAGAGTGTAGATTACAAGG 2030
Query 1977 ACACATCGGTTCCAGAAGAAATAAGAATCAGAGGTTTCAGATTCAACAAAGTGGAGCAAC 2036
||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 2031 ACACATCGGTTCCAGAAGAAATAAGAATCAGAGGTTTTAGATTCAACAAAGTGGAGCAAC 2090
Query 2037 TCGAAAAGAATTTCACTCAACCTGGAAAATTTTCTGTGGAAGATTGAAGTTATCTTTG-- 2094
|||||||||| || ||||||||||| ||||||||||| ||||||||||||||||||||
Sbjct 2091 TCGAAAAGAAGTTAACTCAACCTGGCAAATTTTCTGTTGAAGATTGAAGTTATCTTTGCA 2150
Query 2095 --T----G--ACACTTTGG-AAAA-GTGTTATTTGGCAATATGATTAATTAGCAAATTAT 2144
| | ||||||| |||| |||||||||||||||||||| |||||||||||||
Sbjct 2151 CATTTATGTGACACTTTTTTAAAAAGTGTTATTTGGCAATATGATCAATTAGCAAATTAG 2210
Query 2145 CTAtttttttAA-A---TGCCAAATGATCCATT--T--GTCCTTCTAATGGAGGGCTTAA 2196
|||||||||||| | |||||||||||||||| | ||||||||||||||| ||||||
Sbjct 2211 CTATTTTTTTAAGAGAATGCCAAATGATCCATTAATTTGTCCTTCTAATGGAGAGCTTAA 2270
Query 2197 TTCTTTCTTT 2206
||||||||||
Sbjct 2271 TTCTTTCTTT 2280
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 109437188100
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5