BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495330
Length=2127
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52580.2 | Symbols: | RabGAP/TBC domain-containing protein ... 1829 0.0
> AT5G52580.2 | Symbols: | RabGAP/TBC domain-containing protein
| chr5:21337861-21342985 FORWARD LENGTH=2401
Length=2401
Score = 1829 bits (990), Expect = 0.0
Identities = 1050/1079 (97%), Gaps = 3/1079 (0%)
Strand=Plus/Plus
Query 1051 TTCACAGCATTGTTGGATTCTGAAGGGCGAGTTGTGGAATCAAAAGCTCTTCGGGAGAGA 1110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1290 TTCACAGCATTGTTGGATTCTGAAGGGCGAGTTGTGGAATCAAAAGCTCTTCGGGAGAGA 1349
Query 1111 GTTTTCTATGGAGGCATTGAGCACCAATTGCGAAGAGAGGTATGGCCCTTTCTCTTGGGA 1170
|||||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||
Sbjct 1350 GTTTTCTATGGAGGCATTGAGCACCAGTTGCGTAGAGAGGTATGGCCCTTTCTCTTGGGA 1409
Query 1171 TATTATGCATATGACTCGACATATGCAGAGAGAGAATATCTTCGATCTGTCAAACGGATG 1230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1410 TATTATGCATATGACTCGACATATGCAGAGAGAGAATATCTTCGATCTGTCAAACGGATG 1469
Query 1231 GAATATGCAACATTGAAACAGCAGTGGCAGAGCATTTCCCCTGAACAAGCAAAAAGGTTC 1290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1470 GAATATGCAACATTGAAACAGCAGTGGCAGAGCATTTCCCCTGAACAAGCAAAAAGGTTC 1529
Query 1291 ACAAAATATCGGGAGAGAAAAGGATTGATAGATAAAGATGTGGTAAGAACTGATAGGGCA 1350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1530 ACAAAATATCGGGAGAGAAAAGGATTGATAGATAAAGATGTGGTAAGAACTGATAGGGCA 1589
Query 1351 TTTGAATACTATGAAGGGGATGACAATCTACATGTCAATAGCATGCGTGATATTCTGTTG 1410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1590 TTTGAATACTATGAAGGGGATGACAATCTACATGTCAATAGCATGCGTGATATTCTGTTG 1649
Query 1411 ACATACTCCTTCTACAATTTTGACCTGGGTTACTGCCAGGGAATGAGTGATTATCTGTCT 1470
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1650 ACCTACTCCTTCTACAATTTTGACCTGGGTTACTGCCAGGGAATGAGTGATTATCTGTCT 1709
Query 1471 CCTATCTTGTTCGTGATGGAGGATGAATCAGAATCCTTTTGGTGTTTCGTGGCACTGATG 1530
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct 1710 CCTATCTTGTTCGTGATGGAGGATGAATCAGAATCTTTTTGGTGTTTCGTGGCACTGATG 1769
Query 1531 GAACGCCTCGGACCCAACTTTAACCGTGACCAGAATGGGATGCATACTCAGCTCTTTGCA 1590
||||| || |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1770 GAACGACTTGGACCCAACTTTAACCGTGACCAGAATGGGATGCATACTCAGCTCTTTGCA 1829
Query 1591 CTCTCAAAGCTGGTAGAGTTGCTCGATACCCCGCTGCATAATTACTTCAAGCAGAATGAC 1650
|||||||||||||||||||||||||||| |||||| ||||||||||| ||| ||||||||
Sbjct 1830 CTCTCAAAGCTGGTAGAGTTGCTCGATAGCCCGCTACATAATTACTTTAAGGAGAATGAC 1889
Query 1651 TGCTTAAATTACTTCTTCTGTTTCCGCTGGATCCTGATTCAGTTTAAAAGGGAATTTGAG 1710
||||| |||||||||||||||||||||||||| |||||||||||||||||||||||||||
Sbjct 1890 TGCTTGAATTACTTCTTCTGTTTCCGCTGGATTCTGATTCAGTTTAAAAGGGAATTTGAG 1949
Query 1711 TACGAGAAGACAATGCAGCTGTGGGAGGTGATGTGGACCCACTACCTCTCGGAACATTTT 1770
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1950 TATGAGAAGACAATGCAGCTGTGGGAGGTGATGTGGACCCACTACCTCTCGGAACATTTT 2009
Query 1771 CACCTATATGTTTGTGTGGCGGTCTTGAAGCGATGCCGCAGCAAGATAATGGGAGAACAG 1830
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2010 CACCTATATGTTTGTGTGGCGGTCTTGAAGCGATGCCGCAGCAAGATAATGGGAGAACAG 2069
Query 1831 ATGGATTTTGACACTCTCTTAAAGTTCATCAATGAGCTGTCTGGGCATATTGACCTCGAT 1890
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 2070 ATGGATTTTGACACTCTCTTAAAGTTCATCAATGAGCTGTCTGGGCATATTGATCTCGAT 2129
Query 1891 TCAACAGTCAGAGATGCCGAAGCACTTTGCATATGT-GCTGGTGAAAATGGTGCTGCTAG 1949
||||||||||||||||||||||||||||||||| | |||||||||||||||||||||||
Sbjct 2130 TCAACAGTCAGAGATGCCGAAGCACTTTGCATA-GAAGCTGGTGAAAATGGTGCTGCTAG 2188
Query 1950 TATTCCTCCAGGAACCCCTCCTTCTTTACCCCTTGATGACGGTACCTTATATCCTCAGGA 2009
|||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||
Sbjct 2189 CATTCCTCCAGGAACCCCTCCTTCTCTACCCCTTGATGACGGTACCTTATATCCTCAGGA 2248
Query 2010 AGATGATGTTTTGTAAGTAATACAACTTTGCTTTTT-CTTCAAGACATGTTACCAAAATT 2068
||||||||||||||||||||||| ||||| |||||| |||| |||||||||||||||||
Sbjct 2249 AGATGATGTTTTGTAAGTAATACGACTTTTCTTTTTTCTTCTGGACATGTTACCAAAATT 2308
Query 2069 TGGATTGCTTTGACCAGAAATCCCATACAATGATTAAGTCAATGGATATAAGCTTTTTT 2127
||||||||||| || ||||||||||||||||||||||| ||| ||| ||||||||||||
Sbjct 2309 TGGATTGCTTTTACTAGAAATCCCATACAATGATTAAGGCAAAGGACATAAGCTTTTTT 2367
Score = 1642 bits (889), Expect = 0.0
Identities = 1000/1053 (95%), Gaps = 9/1053 (1%)
Strand=Plus/Plus
Query 1 ATGAGTATGGAAGCATCGGAGCTACAGGATCTCTCCGACGACGCCGATTACGCTGCTTCT 60
||||||||||||||| |||||||||| |||||||| ||||||||||||||||| ||||||
Sbjct 192 ATGAGTATGGAAGCAACGGAGCTACAAGATCTCTCTGACGACGCCGATTACGCCGCTTCT 251
Query 61 CAACAACAAGGATCGGCTAGTATGATGCGTAGCGATAGCGGAAAGAGAAGTTCACCTAGT 120
|||||||||||||||||||||||||||||||||||||||||||||||||||| || |||
Sbjct 252 CAACAACAAGGATCGGCTAGTATGATGCGTAGCGATAGCGGAAAGAGAAGTTTACAAAGT 311
Query 121 GAACACGAAGACGCTGAATTGATATATTTGAAAGATAACGTTGCAATTCATCCTACACAG 180
|||||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||
Sbjct 312 GAACACGAAGACGCTGTATTGATTTATTTGAAAGATAACGTTGCAATTCATCCTACACAG 371
Query 181 TTCGCATCTGAGAGGATTAGTGGTAGATTGAAGTTGACTAAGCAAGATTCTGTTCTCTT- 239
||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct 372 TTCGCATCTGAGAGGATTAGTGGTAGATTGAAGTTGACTAAGCAAGACTCTGTTCTCTTT 431
Query 240 CTTGTCGTGGATTCCGTACAAGGGACAAACTTCAAATGCAAAGTTATCAGAAAAAGACAG 299
|| ||||||||||||||||||||||||||| |||||||||||| ||||||| ||||||||
Sbjct 432 CT-GTCGTGGATTCCGTACAAGGGACAAACATCAAATGCAAAGCTATCAGAGAAAGACAG 490
Query 300 GAGTCTTTATACCATCACCGCGGTTCCGTTTACTGAAGTGAGGTCCATTAGGCGACACAC 359
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 491 GAGTCTTTATACCATCACCGCGGTTCCGTTTACTGAAGTGAGGTCCATTAGGAGACACAC 550
Query 360 TCCTACTCTCGGATGGCAGTATGTAATTGTTGTCCTGTCTTCTGGACTTGCATTTCCGCC 419
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||| ||
Sbjct 551 TCCTGCTCTCGGATGGCAGTATGTAATTGTTGTCCTGTCTTCTGGACTTGCATTTCCACC 610
Query 420 TCTGTACTTCTATAATGGAGGAGTCAGGGAGTTTCTGGCCATAGTGAAGCAGCATGTTTT 479
|||||||||||| ||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 611 TCTGTACTTCTACAATGGAGGAGTCAGGGAGTTTCTGGCCATGGTGAAGCAGCATGTTTT 670
Query 480 TCTTGCAAGGTCGTCAGAAGATCCAAATGTGTTCATTGTGAATGATTTTCAGAGTCCCTT 539
||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct 671 TCTTGCAAGGTCGTCAGAAGATCAAAATGTGTTCATTGTGAATGATTTTCAGAGTCCCTT 730
Query 540 GCAGAGAACTTTGTCATCATTGGAGCTGCCAAGTTCACTGCCTGTAGCAAGTGGACAATC 599
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct 731 GCAGAGAACTTTGTCTTCATTGGAGCTGCCAAGTTCACTGCCTGTAGCAAGTGGACAATC 790
Query 600 AGTATACCCCTTAGACGGAGGTTCTTCTAACGAAAATCAAGGGAGAACAAGTGCAGATAT 659
|||||||| ||||||||||||||||||| ||||||||| ||||||||||| ||||| |
Sbjct 791 CGTATACCCATTAGACGGAGGTTCTTCTAGTGAAAATCAAAGGAGAACAAGTTCAGATGT 850
Query 660 TGGTAATAGAGTTTCTAGTGTTATCC-AGTCTGGTCTG-AGAAAGCACAAGAATCATGAT 717
|||||||||||| ||||||||| ||| ||||||| || |||||||| |||| |||||||
Sbjct 851 TGGTAATAGAGTATCTAGTGTT-TCCCAGTCTGG-CTTCAGAAAGCAAAAGAGTCATGAT 908
Query 718 CCAACTCGGGATCTTTCAATCCATCTTCTAGAGAAGTTTTCTCTGGTTACCAAATTTGCT 777
|||||||||||||||||||||||||| |||||||||||||||||||||||||||||||||
Sbjct 909 CCAACTCGGGATCTTTCAATCCATCTACTAGAGAAGTTTTCTCTGGTTACCAAATTTGCT 968
Query 778 CGAGATACAACTACTCAGTTGTTTTCCGAAAACAATGGCTTTGGTTCCGTTGACAAGAGA 837
|||||||||||||||||| ||||||| ||||||||||||||||||||| |||||||||||
Sbjct 969 CGAGATACAACTACTCAGCTGTTTTCGGAAAACAATGGCTTTGGTTCCATTGACAAGAGA 1028
Query 838 TGGAATAACCAACCCGTACATAGTTATCCTGAAAAGTTGTCAAATATTGCTGAGGAAAAG 897
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct 1029 TGGAATAACCAACCCGTACATAGTTATCCTGAAAAGTTGTCGAACATTGCTGAGGAAAAG 1088
Query 898 CATAATGAAATCCGTCATAGTTATTCTGAAAATGACCTTCTCAAGGATGAAGAAATTTCT 957
||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct 1089 CATCATGAAATCCGTCATAGTTATTCTGAAAATGACCTTCTCAAGGATGACGAAATTTCT 1148
Query 958 AATGACATTGATGTCCCTGCGGATCCCTTAGAGTTTAATAAATTAAGTTTGGTGTGGGGA 1017
|| | ||||||||||||| ||||||||||||||| |||||||||||||| ||||||||
Sbjct 1149 TAT-A--TTGATGTCCCTGCTGATCCCTTAGAGTTTGATAAATTAAGTTTGATGTGGGGA 1205
Query 1018 AAGCCAAGGCAACCACCAATGGGGCATAAAGAG 1050
|| ||||||||||||||||||||||||||||||
Sbjct 1206 AAACCAAGGCAACCACCAATGGGGCATAAAGAG 1238
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 105471345045
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5