BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495332
Length=1068
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52620.1 | Symbols: | F-box associated ubiquitination effec... 780 0.0
AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-1101... 67.6 2e-10
AT2G02660.1 | Symbols: | F-box associated ubiquitination effec... 56.5 5e-07
AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-... 56.5 5e-07
AT1G30945.1 | Symbols: | pseudogene, hypothetical protein | ch... 54.7 2e-06
> AT5G52620.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr5:21348554-21349681 REVERSE LENGTH=1128
Length=1128
Score = 780 bits (422), Expect = 0.0
Identities = 578/651 (89%), Gaps = 20/651 (3%)
Strand=Plus/Plus
Query 9 TCAGATCCAATCCCGACTGACATCATTCTCGTCTCTCGATATACTATCGAAATTGTCTAA 68
|||||||||||||||| || || | || | |||||||||||| |||| ||||||||
Sbjct 19 TCAGATCCAATCCCGATTG--AT-A---TCAT-TCTCGATATACTCTCGAGATTGTCTAC 71
Query 69 TAAGTCAATCGCTAGGTTTGGTCTCGCATACAAGTTCTGTTCG-TCTATACTTAGAGGTC 127
||| |||||||||| |||||||||||||| ||||||||| | | |||||||| |||||||
Sbjct 72 TAATTCAATCGCTAAGTTTGGTCTCGCATCCAAGTTCTG-TGGATCTATACTAAGAGGTC 130
Query 128 AAGATTTCACTAAGTTGTTCC-AA--ACTAGGCCCTTGACTCGGCCACGTCTCTTATTCG 184
||||||||| | ||||||||| || ||||||||||||| ||| ||||||||||||||||
Sbjct 131 AAGATTTCATTGAGTTGTTCCTAATTACTAGGCCCTTGAGTCGTCCACGTCTCTTATTCG 190
Query 185 CCGTTCAAAATTCTGATAAGTGGTGCTTATACTCGTCGCCTCAGCCGAAGAATCCAGATG 244
| |||||||||||||||||||||||||| ||||||||||||||| | || ||||||||
Sbjct 191 CGGTTCAAAATTCTGATAAGTGGTGCTTGTACTCGTCGCCTCAGTCTCAGTTTCCAGATG 250
Query 245 AGAATCATTCTCTTGTACTATCAACCGATTTTCATATGCAGTTACCTAGAGACATGTGCC 304
||||||||||||||||| ||||| |||||||||||||| |||||| |||||||||| | |
Sbjct 251 AGAATCATTCTCTTGTAGTATCAGCCGATTTTCATATGGAGTTACGTAGAGACATGGGAC 310
Query 305 AAGAGATTTTTGGCCTTGTCTCTGGTTTGCTCTATTTCCCTAATACGC-TGACAGATAAA 363
|||||||||||||||||||||||||||||||||||||||||||||||| | |||| ||
Sbjct 311 AAGAGATTTTTGGCCTTGTCTCTGGTTTGCTCTATTTCCCTAATACGCGT-ACAGGCGAA 369
Query 364 GTGCCGGTGATATGTAACCCTAGCACGGGACAGTACGCAAGATTAACTCAATGGACAAGT 423
|||||||||||||||||||||||||||||||| |||||||||||||||||| ||| |||
Sbjct 370 GTGCCGGTGATATGTAACCCTAGCACGGGACAATACGCAAGATTAACTCAAAGGAGTAGT 429
Query 424 AAGAGCAATTTGAGCAGCTTATTAGGGTATGATCCTATTGGCAAACAATACAAGGTACTC 483
| || |||||||||||||||||||||||||||||| ||||||||| ||||||||||| ||
Sbjct 430 ATGAACAATTTGAGCAGCTTATTAGGGTATGATCCGATTGGCAAAAAATACAAGGTAATC 489
Query 484 ACAACAAGCAATTCATATTTTAATTCACAAAATATTCAGACATTACGAACTGGAAAAGTA 543
||| |||||| |||| ||||| || || ||||||||| ||||||| ||||||||||||||
Sbjct 490 ACACCAAGCAGTTCACATTTTGATCCAGAAAATATTCTGACATTAGGAACTGGAAAAGTA 549
Query 544 GCATGGAGGACG-ATCCAATGTCTCGTAGACCATTATCCT-ATAAGTGAAGGGATATGCA 601
|||||||||| | |||| |||||||||||||||||||||| | |||||||||||||||||
Sbjct 550 GCATGGAGGA-GTATCCGATGTCTCGTAGACCATTATCCTGA-AAGTGAAGGGATATGCA 607
Query 602 TCAATGGGGTTTTGTATTACATGGCTCGCCACCA-TGACCAGTTCAGTGGT 651
|||||||||| ||||||||||||||| || || | | |||||||||||||
Sbjct 608 TCAATGGGGTGTTGTATTACATGGCTAGCAACAAATT-CCAGTTCAGTGGT 657
Score = 472 bits (255), Expect = 4e-132
Identities = 374/430 (87%), Gaps = 14/430 (3%)
Strand=Plus/Plus
Query 652 TTTCTAAATGCGGATCATGACATAACCTTATGTTCTTTGCTTGCTAAACTGATCAATTAT 711
||||| ||||||||| |||| ||||||| ||| || ||||||||||||||| |||||
Sbjct 700 TTTCTTAATGCGGATGTTGACGTAACCTTTTGTCCTGCGCTTGCTAAACTGATTAATTAC 759
Query 712 AAGGGTAAATTAGGTGTGCTTCGTTG-TTATTGGGATAATCAAATTTATAAAAAG-C-CT 768
|||||||||||| | |||||| |||| ||| |||||||||||||||||| |||| | ||
Sbjct 760 AAGGGTAAATTATGCGTGCTTAGTTGTTTA-TGGGATAATCAAATTTATCCAAAGCCGCT 818
Query 769 T--G-GG-CTGTAGTTAAGTTGTGTTTGTGGGTTCTAGAGGATGCTGAGAAAGAAGAATG 824
| | || ||| ||| |||||| |||||||||||||| ||||| ||||||||||||||
Sbjct 819 TCGGTGGAAGGTACTTATGTTGTGGTTGTGGGTTCTAGAAGATGCCGAGAAAGAAGAATG 878
Query 825 GTTGAAATGTGAATACACTTTACC-G-G----TCTTTAAGGGTTATGTTTCCGTTGTTGG 878
||||||| ||||||||||||| || | | || || | || ||||||||||||||||
Sbjct 879 GTTGAAACGTGAATACACTTTGCCGGTGAATATCGTTCACGGCAATGTTTCCGTTGTTGG 938
Query 879 AGTGACTGCTACTGGTGAAATTATTTTGTCCATGGATTATACATCGAAATCCTTCTTTGT 938
||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||||
Sbjct 939 AGTGACTGCTACTGGTGAAATTATTTTATCCATGGATTATACATCGGAATCCTTCTTTGT 998
Query 939 TTACTACTTCAACCCCGAAACAAACACTTTGCAAAGAGTTGGAATCCTAGGGCTTGAAGG 998
|||||||||||||||||||| ||||||| || ||| ||||| ||||| ||| |||||||
Sbjct 999 TTACTACTTCAACCCCGAAAGAAACACTCTGGAAAAAGTTGAAATCCAAGGTTTTGAAGG 1058
Query 999 GTCAGAGAAGAATCTTAGTAGTAGAGTTCACACCTTTGTAGACTATGCAGAAGATTTCAA 1058
|||||||||||||||||||||||||||| |||||||||| ||||||||||||||| ||||
Sbjct 1059 GTCAGAGAAGAATCTTAGTAGTAGAGTTTACACCTTTGTTGACTATGCAGAAGATGTCAA 1118
Query 1059 GTTTATATAA 1068
||||||||||
Sbjct 1119 GTTTATATAA 1128
> AT1G30925.1 | Symbols: | phospholipase Cs | chr1:11009888-11011792
REVERSE LENGTH=1125
Length=1125
Score = 67.6 bits (36), Expect = 2e-10
Identities = 88/112 (79%), Gaps = 7/112 (6%)
Strand=Plus/Plus
Query 513 AAATATTCAGACATTACGAACTGGAA-AAGT-AGCATGGAGGACGATCCAATGTCTCGTA 570
||| |||| ||| || ||||| ||| || | || ||||| | |||||| || | | ||
Sbjct 31 AAA-ATTCTGACCTTGGGAACTAGAAGAA-TGAG-GTGGAGAAAGATCCATTGCCCCTTA 87
Query 571 GAC-CATTATCCTATAAGTGAAGGGATATGCATCAATGGGGTTTTGTATTAC 621
|| ||| ||||| | |||||||||||||||||||||||||||| ||||||
Sbjct 88 -ACTCATGATCCTTTTTGTGAAGGGATATGCATCAATGGGGTTTTATATTAC 138
> AT2G02660.1 | Symbols: | F-box associated ubiquitination effector
family protein | chr2:738504-739769 FORWARD LENGTH=1266
Length=1266
Score = 56.5 bits (30), Expect = 5e-07
Identities = 32/33 (97%), Gaps = 0/33 (0%)
Strand=Plus/Plus
Query 587 GTGAAGGGATATGCATCAATGGGGTTTTGTATT 619
|||| ||||||||||||||||||||||||||||
Sbjct 593 GTGATGGGATATGCATCAATGGGGTTTTGTATT 625
> AT1G31080.1 | Symbols: | F-box family protein | chr1:11091832-11092899
FORWARD LENGTH=1068
Length=1068
Score = 56.5 bits (30), Expect = 5e-07
Identities = 30/30 (100%), Gaps = 0/30 (0%)
Strand=Plus/Plus
Query 594 GATATGCATCAATGGGGTTTTGTATTACAT 623
||||||||||||||||||||||||||||||
Sbjct 402 GATATGCATCAATGGGGTTTTGTATTACAT 431
> AT1G30945.1 | Symbols: | pseudogene, hypothetical protein |
chr1:11026338-11026784 REVERSE LENGTH=447
Length=447
Score = 54.7 bits (29), Expect = 2e-06
Identities = 36/39 (92%), Gaps = 1/39 (3%)
Strand=Plus/Plus
Query 590 AAGGGATATGCATCAATGGGGTTTTGTATTACA-TGGCT 627
||| |||||||||||||||||||||||||||| |||||
Sbjct 16 AAGAGATATGCATCAATGGGGTTTTGTATTACTCTGGCT 54
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 52308967890
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5