BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495335
Length=758
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52650.1 | Symbols: | RNA binding Plectin/S10 domain-contai... 1037 0.0
AT4G25740.1 | Symbols: | RNA binding Plectin/S10 domain-contai... 536 1e-151
> AT5G52650.1 | Symbols: | RNA binding Plectin/S10 domain-containing
protein | chr5:21355555-21357105 REVERSE LENGTH=868
Length=868
Score = 1037 bits (561), Expect = 0.0
Identities = 666/714 (93%), Gaps = 18/714 (3%)
Strand=Plus/Plus
Query 1 ATATAAAATCATCGTCTTCTCTGA-TCCTGTGAAAACCCTAG-TTTTTGCTCTCTCGAAG 58
||||||| |||||||||||||| | ||||| ||||||||||| |||||||||||||||||
Sbjct 1 ATATAAAGTCATCGTCTTCTCT-AGTCCTGCGAAAACCCTAGTTTTTTGCTCTCTCGAAG 59
Query 59 TT-C---CG--TCTCTGCTCGAGCAAGATCTCCTACCGATACAATGATTATCTCAGAGGC 112
|| | || |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 60 TTCCGTGCGACTCTCTGCTCGAGCAAGATCTCCTACCGATACAATGATTATCTCAGAGGC 119
Query 113 TAACCGCAAAGAAATCTGCAAGTACCTTTTCAAAGAAGGAGTTTGCTTTGCTAAGAAAGA 172
||||||||||||||||||||||||||| ||||||||||||||||||||||| ||||| ||
Sbjct 120 TAACCGCAAAGAAATCTGCAAGTACCTCTTCAAAGAAGGAGTTTGCTTTGCGAAGAAGGA 179
Query 173 TTTCAATCTTGCTAAGCATCCGTTGATCGATGTCCCGAACCTGCAAGTGATTAAGCTGAT 232
|||||||||||||||||||||||||||||||||||| ||||| |||||||||||||| ||
Sbjct 180 TTTCAATCTTGCTAAGCATCCGTTGATCGATGTCCCCAACCTACAAGTGATTAAGCTTAT 239
Query 233 GCAGAGTTTCAAATCCAAGGAGTATGTTAGGGAGACATTTGCGTGGATGCATTACTATTG 292
|||||||||||||||||||||||||||||||||||||||||| |||||||||||||||||
Sbjct 240 GCAGAGTTTCAAATCCAAGGAGTATGTTAGGGAGACATTTGCCTGGATGCATTACTATTG 299
Query 293 GTTTTTGACCAATGAAGGAATTGAGTTCTTGAGAACTTATCTTAATCTTCCATCTGATGT 352
|||||||||||||||||| || ||||||||||||||||||||||||||||||||||||||
Sbjct 300 GTTTTTGACCAATGAAGGGATCGAGTTCTTGAGAACTTATCTTAATCTTCCATCTGATGT 359
Query 353 TGTTCCTGCTACTTTGAAGAAGTCAGCTAAGCCTGTTGGTCGTTCATTTGGTGGTCCACC 412
||||||||||||||||||||||||||||||||||| ||||||| |||||||||| |||||
Sbjct 360 TGTTCCTGCTACTTTGAAGAAGTCAGCTAAGCCTGGTGGTCGTCCATTTGGTGGCCCACC 419
Query 413 TGGTGATCGCTCAAGGGGACCTCGTCATGAAGGAGGAGACCGTCCCAGGTATGCTGACCG 472
||||||||||||||| |||||||| ||||||||||||||||||||||||| || ||||||
Sbjct 420 TGGTGATCGCTCAAGAGGACCTCGCCATGAAGGAGGAGACCGTCCCAGGTTTGGTGACCG 479
Query 473 TGATGCGTACCGTGGAGGTCCTCGTGGTGGTGGTGAGTTTGGGGGTGAAAAGGGTGGAGC 532
||||| |||||||| ||||||||| | ||||||||||||||| |||||||||||||||||
Sbjct 480 TGATGGGTACCGTGCAGGTCCTCGAGCTGGTGGTGAGTTTGGAGGTGAAAAGGGTGGAGC 539
Query 533 TCCAGCAGATTACCAGCCATCTTTCCAAGGAAGTGGCCGTGGTTTTGGCCGTGGTGCTGG 592
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 540 TCCCGCAGATTACCAGCCATCTTTCCAAGGAAGTGGCCGTGGTTTTGGCCGTGGTGCTGG 599
Query 593 TGGTTACAGCGCGGCTGCACCATCTGGTTCAGGTTTGCCTTGAAAG-GAAATGTCTTTAG 651
||| |||||||| |||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 600 TGGCTACAGCGCAGCTGCACCATCTGGTTCAGGTTTGCCTTGAAAAAGAAATGTCTTTAG 659
Query 652 TTGACAGTAAGACCATGGACATGGAGGAGTTGTTTCAGCTTTAAGTTTTACTTT 705
|||||||||||||||||| |||| || || ||||||||| |||| ||||
Sbjct 660 GTGACAGTAAGACCATGGA---GGAG---TT-TT-CAGCTTTAAATTTTGCTTT 705
Score = 84.2 bits (45), Expect = 2e-15
Identities = 51/54 (94%), Gaps = 0/54 (0%)
Strand=Plus/Plus
Query 705 TCTATCTGAGTTTAGTTTTGTTGTTGAAGCAAACATCCAATTTTAAGTTATGTT 758
|||||||||||||||||||||||||||| ||||||||| |||| ||||||||||
Sbjct 737 TCTATCTGAGTTTAGTTTTGTTGTTGAATCAAACATCCGATTTAAAGTTATGTT 790
> AT4G25740.1 | Symbols: | RNA binding Plectin/S10 domain-containing
protein | chr4:13107250-13108827 REVERSE LENGTH=848
Length=848
Score = 536 bits (290), Expect = 1e-151
Identities = 472/555 (85%), Gaps = 32/555 (6%)
Strand=Plus/Plus
Query 96 ATGATTATCTCAGAG-GCTAACCGCAAAGAAATCTGCAAGTACCTTTTCAAAGAAGGAGT 154
||||||||||||||| | || |||| ||| |||||||| |||||||||||||| |||||
Sbjct 77 ATGATTATCTCAGAGAAC-AATCGCAGAGAGATCTGCAAATACCTTTTCAAAGAGGGAGT 135
Query 155 TTGCTTTGCTAAGAAAGATTTCAATCTTGCTAAGCATCCGTTGATCGATGTCCCGAACCT 214
|||||||||||||| ||||||||||| | |||||||||||||| ||||| || |||||
Sbjct 136 ATGCTTTGCTAAGAAGGATTTCAATCTCCCAAAGCATCCGTTGATTGATGTACCAAACCT 195
Query 215 GCAAGTGATTAAGCTGATGCAGAGTTTCAAATCCAAGGAGTATGTTAGGGAGACATTTGC 274
||||||||||||||| |||||||||||||| ||||||||||| |||||||||||||||||
Sbjct 196 GCAAGTGATTAAGCTCATGCAGAGTTTCAAGTCCAAGGAGTACGTTAGGGAGACATTTGC 255
Query 275 GTGGATGCATTACTATTGGTTTTTGACCAATGAAGGAATTGAGTTCTTGAGAACTTATCT 334
|||||||||||| ||||||||| |||| ||||||||||||||||||||||||||||||||
Sbjct 256 GTGGATGCATTATTATTGGTTTCTGACTAATGAAGGAATTGAGTTCTTGAGAACTTATCT 315
Query 335 TAATCTTCCATCTGATGTTGTTCCTGCTACTTTGAAGAAGTCAGCTAAGCCTGTTGGTCG 394
||| ||||| || |||||||| |||||||||||||||||||| |||||||| | ||||||
Sbjct 316 TAACCTTCCTTCCGATGTTGTCCCTGCTACTTTGAAGAAGTCTGCTAAGCCCGGTGGTCG 375
Query 395 TTCATTTGGTGGTCCACCTGGTGATCGCTCAAGG-GGACC---TCG-TCATGAAGGAGGA 449
| | |||||||| ||||||||||||||| ||| | ||||| ||| || ||| |||| |
Sbjct 376 TCCCTTTGGTGGCCCACCTGGTGATCGC-CAAAGAGGACCACCTCGCTC-TGATGGAG-A 432
Query 450 GACCGTCCCAGGTATGCTGACCGTGATGCG-TACCGTGGAGGTCCTCGTGGTGGTGGTGA 508
||||||||| | || ||||||||||| | ||||||||||| || |||||||||| |||
Sbjct 433 --CCGTCCCAGATTTGGTGACCGTGATG-GATACCGTGGAGGCCCACGTGGTGGTGATGA 489
Query 509 GTTTGGGGGTGAAAAGGGTGGAGCTCCAGCAGATTACCAGCCATCTTTCCAAGGAAGTGG 568
| || ||||||||||||||| |||| |||||| |||||||||||| ||||
Sbjct 490 G----------AA--GGGTGGAGCTCCAGCTGATTTCCAGCCGTCTTTCCAAGGAGGTGG 537
Query 569 CCGT-GG--T--TTT-GGCCGTGGTGCTGGTGGTTACAGCGCGGCTGCACCATCTGGTTC 622
|| || | ||| ||||||||||| || |||||||| || || ||||||||||||||
Sbjct 538 TGGTAGGCCTGGTTTTGGCCGTGGTGCAGGCGGTTACAGTGCAGCAGCACCATCTGGTTC 597
Query 623 AGGTTTGCCTTGAAA 637
||| || ||||||||
Sbjct 598 AGGGTTCCCTTGAAA 612
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 36821629751
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5