BLASTN 2.2.26+


Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.



Database: TAIR10_cdna_20110103_representative_gene_model_updated
           33,602 sequences; 51,074,197 total letters



Query= Ahg495338

Length=357
                                                                      Score     E
Sequences producing significant alignments:                          (Bits)  Value

  AT5G52670.1 | Symbols:  | Copper transport protein family | chr...   577    3e-164


> AT5G52670.1 | Symbols:  | Copper transport protein family | chr5:21363655-21364302 
FORWARD LENGTH=453
Length=453

 Score =  577 bits (312),  Expect = 3e-164
 Identities = 343/358 (96%), Gaps = 2/358 (1%)
 Strand=Plus/Plus

Query  1    CAATCATCAAGCTTTCTATATTTTTCGAAAATGCCGGAGAAAGTGGTATTCAAGCTGGAA  60
            |||||||||| ||||||||| ||| ||||||||||||||||||| ||||||||| |||||
Sbjct  44   CAATCATCAAACTTTCTATACTTTCCGAAAATGCCGGAGAAAGTTGTATTCAAGTTGGAA  103

Query  61   GTTTTTGAGGAAAGAATCAAACGGAGAGCTATGAAAGTTGTATGTGACTTTCCAGGAGTT  120
            ||||||||||||||||||||||| ||||||||||||||||||||||||||||||||||||
Sbjct  104  GTTTTTGAGGAAAGAATCAAACGAAGAGCTATGAAAGTTGTATGTGACTTTCCAGGAGTT  163

Query  121  ACTTTGATAGACGTGAAGGAAAAAGGTAAACTAAAGGTGAATGGAGAATTTGATAAGTTT  180
            ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct  164  ACTTTGATAGACGTGAAGGAAAAAGGTAAACTAAAGGTGAATGGAGAATTTGATAAGTTT  223

Query  181  GAAATGACGAAGAAACTTAAGAAGGTATATGAATTTGTTGACATTATCGCGGTTGGACCG  240
            |||||||||||||||||||||||||| ||||||||||||||||||||||||||||| |||
Sbjct  224  GAAATGACGAAGAAACTTAAGAAGGTGTATGAATTTGTTGACATTATCGCGGTTGGGCCG  283

Query  241  GATGGAGAACCAGCGA-AAAATCAGAAGCTGGTTAAAAAGCCTGAACCAAAAGTGAAGAA  299
            ||||||||||| || | ||||||||||||||||||||||||||||||| |||||||||||
Sbjct  284  GATGGAGAACCGGC-ACAAAATCAGAAGCTGGTTAAAAAGCCTGAACCTAAAGTGAAGAA  342

Query  300  AGCACCATCTTACCGTGGTTGGAATTTGGGTTTCTTTAAGTAATCGATTTGAAGTCGT  357
            ||||||||||||||||||||||||||||||||||||||||| ||| |||||||| |||
Sbjct  343  AGCACCATCTTACCGTGGTTGGAATTTGGGTTTCTTTAAGTGATCAATTTGAAGACGT  400



Lambda     K      H
    1.33    0.621     1.12 

Gapped
Lambda     K      H
    1.28    0.460    0.850 

Effective search space used: 16739160417


  Database: TAIR10_cdna_20110103_representative_gene_model_updated
    Posted date:  Sep 25, 2014  6:13 PM
  Number of letters in database: 51,074,197
  Number of sequences in database:  33,602



Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5