BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495340
Length=579
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52750.1 | Symbols: | Heavy metal transport/detoxification ... 928 0.0
AT5G52770.1 | Symbols: | Copper transport protein family | chr... 292 2e-78
AT5G52760.1 | Symbols: | Copper transport protein family | chr... 279 1e-74
> AT5G52750.1 | Symbols: | Heavy metal transport/detoxification
superfamily protein | chr5:21384043-21384924 FORWARD LENGTH=640
Length=640
Score = 928 bits (502), Expect = 0.0
Identities = 557/583 (96%), Gaps = 6/583 (1%)
Strand=Plus/Plus
Query 1 tctctctctctctctTAAGAATATCGGAAATTTCTGAAGCTTTGCTATAGTTGATCTCGA 60
||||||||| |||||||||||||| |||||||||||||||||| ||||||||||||||||
Sbjct 29 TCTCTCTCTTTCTCTTAAGAATATTGGAAATTTCTGAAGCTTTTCTATAGTTGATCTCGA 88
Query 61 GCCATGCCTCCGATGAAAGCTGTGTTGCAATTGAGCATTCACGAAGAAAGAATCAGGAAG 120
||||||||||| |||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct 89 GCCATGCCTCCAATGAAAGCTGTGTTGCAATTGAGCATTCACGAGGAAAGAATCAGGAAG 148
Query 121 AAAGCGTTTGTTACTGTTTCTAGATGTCCAGGTGTTACTTCGATAACAATTGATGACAAA 180
||||||||||| || |||||| |||||||||||||||||||||||||||| |||||||||
Sbjct 149 AAAGCGTTTGTCACCGTTTCTCGATGTCCAGGTGTTACTTCGATAACAATGGATGACAAA 208
Query 181 ACCGGGAAAATGACTGTAGTTGGTGAAGTTGATGTACCGGTTATCGTGATGAAGCTAAGG 240
|||||||||||||| |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 209 ACCGGGAAAATGACAGTAGTTGGTGAAGTTGATGTACCGGTTATCGTGATGAAGCTAAGG 268
Query 241 AAGCTATGTAACACAGAGATTGTTTCGGTTGAAGTTGTTAAACCACCTGAGAAAAAGCCT 300
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct 269 AAGCTATGTAACACAGAGCTTGTTTCGGTTGAAGTTGTTAAACCACCTGAGAAAAAGCCT 328
Query 301 GAACCGGAGAAACCGGCTCCACCTAAACCAGCTCCAGCTCCAGCTAAACCGGGTGAAATT 360
||||| |||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct 329 GAACCAGAGAAACCGGCTCCACCTAAACCAGCTCCAGCTCCAGCTAAACCGGCTGAAATT 388
Query 361 GTTGCCTGGCCGGTTCAGATGAACAACCCTTACCAATACCATCCTGCCTATGCAAATTCT 420
||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||||
Sbjct 389 GTTGCCTGGCCGGTTCAGATGAACAACCCTTACCAATACAATCCTGCCTATGCAAATTCT 448
Query 421 TACTATCAACCATACGGAAATTCTAGATTTGTAACGGACGAATCAAATTGTGTGATTATG 480
|||||||||||||| || || |||||||||||||||||||||||||||||||||||||||
Sbjct 449 TACTATCAACCATATGGGAACTCTAGATTTGTAACGGACGAATCAAATTGTGTGATTATG 508
Query 481 TGAT---TTATTTCAAATAATGT-T-AAGTTAGTTTTGATGGAAGAATGTAATTTTTTGA 535
|||| |||||||||||||||| | |||||||||||||||||||| ||||||||||| |
Sbjct 509 TGATAACTTATTTCAAATAATGTGTTAAGTTAGTTTTGATGGAAGAGTGTAATTTTTT-A 567
Query 536 GCTACTGTAATATACATTTCTCATATGAGCTTATCCGGAAAAA 578
|||||||||||||||||||||||||||||||||| | ||||||
Sbjct 568 GCTACTGTAATATACATTTCTCATATGAGCTTATTCAGAAAAA 610
> AT5G52770.1 | Symbols: | Copper transport protein family | chr5:21389766-21390189
FORWARD LENGTH=336
Length=336
Score = 292 bits (158), Expect = 2e-78
Identities = 227/259 (88%), Gaps = 9/259 (3%)
Strand=Plus/Plus
Query 75 GAAAGCTGTGTTGCAATTGAGCATTCACGAAGA-AAGAATCAGGAA-GAAAGCGTTTGTT 132
||||||||||||||||||| | || | ||| || || ||||| ||| ||||| |||||
Sbjct 7 GAAAGCTGTGTTGCAATTGGGTATCCCCGAGGAGAA-AATCA-GAATGAAAG-TTTTGTG 63
Query 133 ACTGTTTCTA-GATGTCCAGGTGTTACTTCGATAACAATTGATGACAAAACCGGGAAAAT 191
|| ||| | | ||| | |||||||||||||||||||||| |||||||||||||||||| |
Sbjct 64 ACCGTTGC-AGGATTTACAGGTGTTACTTCGATAACAATAGATGACAAAACCGGGAAACT 122
Query 192 GACTGTAGTTGGTGA-AGTTGATGTACCGGTTATCGTGATGAAGCTAAGGAAGCTATGTA 250
||| ||||| || || | |||||||||| ||||||||||||||||||||||||||||||
Sbjct 123 GACGGTAGTGGGAGACA-TTGATGTACCAATTATCGTGATGAAGCTAAGGAAGCTATGTA 181
Query 251 ACACAGAGATTGTTTCGGTTGAAGTTGTTAAACCACCTGAGAAAAAGCCTGAACCGGAGA 310
| ||||||||| ||||||| || | |||||||||||||||||||||||||||||||||||
Sbjct 182 AGACAGAGATTATTTCGGTAGATGCTGTTAAACCACCTGAGAAAAAGCCTGAACCGGAGA 241
Query 311 AACCGGCTCCACCTAAACC 329
|||||||||||||||||||
Sbjct 242 AACCGGCTCCACCTAAACC 260
> AT5G52760.1 | Symbols: | Copper transport protein family | chr5:21386824-21387703
FORWARD LENGTH=639
Length=639
Score = 279 bits (151), Expect = 1e-74
Identities = 228/265 (86%), Gaps = 5/265 (2%)
Strand=Plus/Plus
Query 55 TCTCGAGCCATG-CCTCCGATGAAAGCTGTGTTGCAATTGAGCATTCACGAAGAAAGAAT 113
|||||||||||| || | | ||| ||||||||||||||||| |||||||| || ||||
Sbjct 87 TCTCGAGCCATGACC-GCAAAGAACGCTGTGTTGCAATTGAGTATTCACGAGGAGAGAAC 145
Query 114 CAGGAAGAAAGCGTTTGTTACTGTTTCTAGATGTCCAGGTGTTACTTCGATAACAATTGA 173
||||||||||||| |||| || |||||| ||| | |||| |||||||||||||||| ||
Sbjct 146 CAGGAAGAAAGCGCTTGTCACCGTTTCTCGATTTTCAGGAGTTACTTCGATAACAA-TG- 203
Query 174 TGACAAAACCGGGAAAATGACTGTAGTTGGTGAAGTTGATGTACCGGTTATCGTGATGAA 233
||||||| ||||||||||| ||||||| |||||||||||||| | | ||||||||||
Sbjct 204 -GACAAAAGTGGGAAAATGACAATAGTTGGAGAAGTTGATGTACCAGCTGTCGTGATGAA 262
Query 234 GCTAAGGAAGCTATGTAACACAGAGATTGTTTCGGTTGAAGTTGTTAAACCACCTGAGAA 293
||||||||||||||||||||||||||| ||||| || || | |||||||||||||| ||
Sbjct 263 GCTAAGGAAGCTATGTAACACAGAGATCGTTTCAGTCGATGATGTTAAACCACCTGTTAA 322
Query 294 AAAGCCTGAACCGGAGAAACCGGCT 318
|||||||||||| |||||||| |||
Sbjct 323 AAAGCCTGAACCTGAGAAACCAGCT 347
Score = 121 bits (65), Expect = 9e-27
Identities = 100/116 (86%), Gaps = 6/116 (5%)
Strand=Plus/Plus
Query 373 GTTCAGATGAACAACCCTTACCAATACCATCCTGCCTATGCAAATTCTTACTATCA--A- 429
|||| ||||||| || | ||||||| | |||||||||||||||||||||||||||| |
Sbjct 366 GTTCCGATGAACTACGCGTACCAATTCAATCCTGCCTATGCAAATTCTTACTATCATCAA 425
Query 430 CCATACGGAAATTCTAGATTTGTAACGGACGAATCAAATTGTGTGATTATGTGATT 485
||||||||||||| |||| | ||| | ||||| ||||||||||||||||||||||
Sbjct 426 CCATACGGAAATTGTAGAGTGGTA--G-ACGAACCAAATTGTGTGATTATGTGATT 478
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 27829717438
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5