BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495341
Length=500
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52780.1 | Symbols: | Protein of unknown function (DUF3464)... 680 0.0
> AT5G52780.1 | Symbols: | Protein of unknown function (DUF3464)
| chr5:21390873-21391474 REVERSE LENGTH=602
Length=602
Score = 680 bits (368), Expect = 0.0
Identities = 459/502 (91%), Gaps = 10/502 (2%)
Strand=Plus/Plus
Query 1 ATGAGAGCTCTCTTGTGCTCTCACCATTTACTACCATTATCATCTTTCTCAAGAACAACT 60
|||||||||||||||||||| |||| ||||||||||||||||||| |||||||||||||
Sbjct 26 ATGAGAGCTCTCTTGTGCTCACACCGTTTACTACCATTATCATCTCTCTCAAGAACAAC- 84
Query 61 C-TCAAAACCAAACT-TCAAAATCCAAAAACCCTAAT-TCCTAACAACAAACCAAGATGG 117
| ||||||||||| | ||| |||||||||||||| || ||||||||||||||||||||||
Sbjct 85 CGTCAAAACCAAA-TCTCACAATCCAAAAACCCT-ATATCCTAACAACAAACCAAGATGG 142
Query 118 GAATCCAAGCTCCACGCAGGACCCAAGGGGTTTCAATCTACTAAAAGCTCTG-AAAACCC 176
||||||||||||||||| ||||| || |||||||||||| ||| || ||||| |||||||
Sbjct 143 GAATCCAAGCTCCACGCTGGACCTAAAGGGTTTCAATCTTCTAGAACCTCTGAAAAACCC 202
Query 177 GGGCCGGCCTGACCCGGGCCCGGAAGACGA-CCCGCCAATACCTCAAGAAGTGTTCGAGC 235
|||||||| ||||||| |||||||||||| ||| || |||||||||||||||||||||
Sbjct 203 -GGCCGGCCAGACCCGGACCCGGAAGACGATCCC-CCGATACCTCAAGAAGTGTTCGAGA 260
Query 236 GGATGATGGGAAGGATCGTCGTGTCGGTAGGAACACCACTAGGCCTAGGAGTGGCAATCT 295
|||||||||| ||||| || ||||| || ||||||||||| ||| | |||||||| ||||
Sbjct 261 GGATGATGGGGAGGATTGTGGTGTCTGTGGGAACACCACTGGGCTTGGGAGTGGCGATCT 320
Query 296 TGAAAATACTCGAAGTCTTGAAGGATAGGAACCTCTGGGACGTGCCGTTGTGGGTTCCAT 355
||||| |||||||||| ||||||||||| ||| ||||||||||||| |||||||||||||
Sbjct 321 TGAAAGTACTCGAAGTTTTGAAGGATAGAAACGTCTGGGACGTGCCTTTGTGGGTTCCAT 380
Query 356 TCTTGACCACACTCGTGACCTTTGGTTCGTCGGCTCTTGGGATTGCTTACGGAAGCTTGT 415
||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct 381 ACTTGACCACACTCGTGACCTTTGGTTCGTCGGCTCTTGGGATTGCGTACGGAAGCTTGT 440
Query 416 CCACAAACTTGGACCCGACCAAGACTAACTCTCTTTTCGGACTCAAAGAGGCAAAGGAGA 475
|||||||| |||||||| ||||||||||||||||||| ||||||||||||||||||||||
Sbjct 441 CCACAAACCTGGACCCGGCCAAGACTAACTCTCTTTTTGGACTCAAAGAGGCAAAGGAGA 500
Query 476 ATTGGGTAGAGATGTGGAAAGA 497
||||||||||||||||||||||
Sbjct 501 ATTGGGTAGAGATGTGGAAAGA 522
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 23861219825
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5