BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495344
Length=1648
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52800.3 | Symbols: | DNA primases | chr5:21395944-21399419... 2344 0.0
> AT5G52800.3 | Symbols: | DNA primases | chr5:21395944-21399419
FORWARD LENGTH=1954
Length=1954
Score = 2344 bits (1269), Expect = 0.0
Identities = 1394/1456 (96%), Gaps = 2/1456 (0%)
Strand=Plus/Plus
Query 57 AAAAAATGTCGAAGAAACTTAGCGCGAACGCCATGGATGATGTTGATCGATTGTTTCAGT 116
||||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct 105 AAAAAATGTCGAAGAAACTTAGCTCGAACTCCATGGATGATGTTGATCGATTGTTTCAGT 164
Query 117 GTTTCAAGTGTGGGATTTCTCCGCCTGCTTCTGCTATGAGAGAAAAGAAACGGAGCAAGA 176
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 165 GTTTCAAGTGTGGGATTTCTCCGCCTGCTTCTGCTATGAGAGAAAAGAAACGGAGCAAGA 224
Query 177 AAATGGTGAATCCAGAAAATGACTCACCTGGGACCTGTAAGAAGTTGCAGCTAAGTTCTT 236
||||| ||||| |||| ||||||| |||| |||||||||||||||||||||||||||||
Sbjct 225 AAATGTTGAATTCAGAGTATGACTCTCCTGTGACCTGTAAGAAGTTGCAGCTAAGTTCTT 284
Query 237 TGTCTAGATTATCTGGaaaaaaaGGACAAAGAAATCAGATTGATGGAGGTGTCAGTCTAG 296
||||||||||||||||||||| |||| |||||||||||||||||||| ||||| | |||
Sbjct 285 TGTCTAGATTATCTGGAAAAAGAGGAGAAAGAAATCAGATTGATGGAAGTGTCTCTGTAG 344
Query 297 ACTCTGTTTCTGGTTCTAGGAATGTGAAAAAGAGTGTTGGGAGGCAGTTTTCACCCATTG 356
| |||||||||||||| ||| ||||||||||||| |||||||||||||||||||||||||
Sbjct 345 ATTCTGTTTCTGGTTCCAGGGATGTGAAAAAGAGCGTTGGGAGGCAGTTTTCACCCATTG 404
Query 357 TATTTTACGGATCTCCAAATGGCGTTCCTCCGAAAAGACCGTTGAGTTTGTTAAGGCTCT 416
|||||||||||||||||||||||||||||||||||| |||||||||||| ||||||||||
Sbjct 405 TATTTTACGGATCTCCAAATGGCGTTCCTCCGAAAAAACCGTTGAGTTTATTAAGGCTCT 464
Query 417 TGCGTGAGATACGTATTGATCTTAGTGAAGAAAGGAAAGCAATCTCCAGGAAAGGAGTTT 476
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 465 TGCGTGAGATTCGTATTGATCTTAGTGAAGAAAGGAAAGCAATCTCCAGGAAAGGAGTTT 524
Query 477 GGGCTACATTTCCTCGGCAAGATGAAGCGATTAAGTTTGGAAAAAGGCATGACAATGTGC 536
|||||||||||||||||||||| |||||||||||||||| ||||||||||||||||||||
Sbjct 525 GGGCTACATTTCCTCGGCAAGAGGAAGCGATTAAGTTTGAAAAAAGGCATGACAATGTGC 584
Query 537 GGATTTTTAGTTATCAAGATCATTTTAGTGGCCAGAGAAGGTTTCTGGTTTCAACATATG 596
||||||||||||||||||||||||||||||| ||||||||||||||||||||| ||||||
Sbjct 585 GGATTTTTAGTTATCAAGATCATTTTAGTGGTCAGAGAAGGTTTCTGGTTTCATCATATG 644
Query 597 AAGAATTCTGGAATAGATACAAATCTATGGATCCAAGGCACCGACACCATTATGAAGTGA 656
||||||||||||| |||||| ||||||||||||||||||||||||||||||||||||||
Sbjct 645 AAGAATTCTGGAAGAGATACCTATCTATGGATCCAAGGCACCGACACCATTATGAAGTGA 704
Query 657 TTCAAGAGGGATTGCCATGCCATATGTACTTTGATTTGGAGTTCAATCAGAAAGAAAATG 716
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 705 TTCAAGAGGGATTGCCATGCCATATGTACTTTGATTTGGAGTTCAATCAGAAAGAAAATG 764
Query 717 AAGGAAAAAATGTGGATGAAATGGTTGATATCCTGGTATCAGTCATTCTTGAAGCCTTGC 776
||||||||||||| |||||||||||||||||| || ||||||||||||| ||||||||||
Sbjct 765 AAGGAAAAAATGTAGATGAAATGGTTGATATCTTGATATCAGTCATTCTGGAAGCCTTGC 824
Query 777 ATGAGAAATATGCTATTGAAGGACAAGAGGACTGGATAGTAGAGCTTGATTCCTCGACTA 836
||||||||||||||| |||||||||||||||||||||||||||||||||||||| ||||
Sbjct 825 GTGAGAAATATGCTATCGAAGGACAAGAGGACTGGATAGTAGAGCTTGATTCCTCAACTA 884
Query 837 AAGATAAGTTTTCTCGTCATGTAATTGTTATCATTCCAAAGGTTGCCTTTAAGGATAACT 896
|||||||||| ||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct 885 AAGATAAGTTCTCTCGTCATGTAATTGTAATCATTCCAAAGGTTGCCTTTAAGGATAACT 944
Query 897 CACACGTTGGTGCTTTTGTAGGAGAGCTATGCTCACGGATAGTAAATGCGAAAG-AAACA 955
||||||||||||||||||| ||||||||||||||||||||||||||||| |||| |||||
Sbjct 945 CACACGTTGGTGCTTTTGTTGGAGAGCTATGCTCACGGATAGTAAATGC-AAAGGAAACA 1003
Query 956 GATGAAAGGTTGCGCAAGCTGTTTGTTCACAAAGAGGCTAATGATTCGGCATCCCTACTT 1015
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct 1004 GATGAAAGGTTGCGCAAGCTGTTTGTTCACAAAGAGGCTAATGATTCGGCATCGCTACTT 1063
Query 1016 TTTGTGGATACTGCTGTTTACTCTAGAAACCGTTGCTTTCGTCTTGCACTATCATCAAAA 1075
|| ||||||||||||||||||||||||||||||||||| |||||||||||||||||||||
Sbjct 1064 TTCGTGGATACTGCTGTTTACTCTAGAAACCGTTGCTTCCGTCTTGCACTATCATCAAAA 1123
Query 1076 GCTGGAAAGGCGTCGGTTCTTTTACCTACAGGACGATTCAAATGTAAGGATATGGGTGAA 1135
||||||||| | || |||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1124 GCTGGAAAGACATCAGTTCTTTTACCTACAGGACGATTCAAATGTAAGGATATGGGTGAA 1183
Query 1136 CCAGATGTTTTCATGACATCCTTAATCTGCAACATAGAATCAGATTGTGAGAAGCTTCTG 1195
| ||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct 1184 CGAGATGTTTTCATGACATCCTTAATCTGCAACGTAGAATCAGATTGTGAGAAGCTTCTG 1243
Query 1196 GTTTGCAAGATGGAATCAGACTGTATGAAGACACTTTGCTTCGACACAGAGGTGAACAGT 1255
||||||||||||||||||||||||||||||||||| ||||| ||||||||||||||||||
Sbjct 1244 GTTTGCAAGATGGAATCAGACTGTATGAAGACACTGTGCTTTGACACAGAGGTGAACAGT 1303
Query 1256 AACAATCTTGTCAGAGACCAGAATGCTCAGAGGTTTCAATTGGATGCTTGCACAAGTGAC 1315
||||||||||| ||||||||||||||||||| |||||| || ||||| |||||||||||
Sbjct 1304 AACAATCTTGTAAGAGACCAGAATGCTCAGAAATTTCAACTGAATGCTAGCACAAGTGAC 1363
Query 1316 ATGTCAACATCGTATTTTGGGGGCAAGTCCCCGTTCCCGCAACTGGACCAATTCGTAGAA 1375
||||||||||| ||||| |||||||||||||||||||||||||||||||||||| |||||
Sbjct 1364 ATGTCAACATCATATTTCGGGGGCAAGTCCCCGTTCCCGCAACTGGACCAATTCATAGAA 1423
Query 1376 TCCACTGCTTCCACTGGGAATGTCCCAGGGAAGATACGCTGCTGGTACTGGTTCTCAGAA 1435
|||||||||||||| |||||||||||||| ||||||||||||||||||||||||||||||
Sbjct 1424 TCCACTGCTTCCACGGGGAATGTCCCAGGTAAGATACGCTGCTGGTACTGGTTCTCAGAA 1483
Query 1436 GATGGCCTGATTGTGTACAGCATGTTAAGAAACAGATATTGCGAACGGATTGGCAGGGAA 1495
|||||||||||||||||||| |||||||||||||||||||||||||||||||||||||||
Sbjct 1484 GATGGCCTGATTGTGTACAGTATGTTAAGAAACAGATATTGCGAACGGATTGGCAGGGAA 1543
Query 1496 CATAAAAGCAATCATG 1511
||||||||||||||||
Sbjct 1544 CATAAAAGCAATCATG 1559
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 81425283990
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5