BLASTN 2.2.26+
Reference:
Zheng Zhang, Scott Schwartz, Lukas Wagner, and Webb Miller (2000),
"A greedy algorithm for aligning DNA sequences", J Comput Biol 2000;
7(1-2):203-14.
Database: TAIR10_cdna_20110103_representative_gene_model_updated
33,602 sequences; 51,074,197 total letters
Query= Ahg495345
Length=1279
Score E
Sequences producing significant alignments: (Bits) Value
AT5G52810.1 | Symbols: | NAD(P)-binding Rossmann-fold superfam... 1857 0.0
AT5G52800.3 | Symbols: | DNA primases | chr5:21395944-21399419... 152 8e-36
> AT5G52810.1 | Symbols: | NAD(P)-binding Rossmann-fold superfamily
protein | chr5:21399331-21400603 FORWARD LENGTH=1273
Length=1273
Score = 1857 bits (1005), Expect = 0.0
Identities = 1193/1282 (93%), Gaps = 19/1282 (1%)
Strand=Plus/Plus
Query 1 CGAGGAAGATGATGACTGGTGGGTAGCAGCTGCAGAAGAGTCACTAAAACAAATCGCATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 2 CGAGGAAGATGATGACTGGTGGGTAGCAGCTGCAGAAGAGTCACTAAAACAAATCGCATC 61
Query 61 TTTAAGTCCTTCCCCAAAATACCCTTGATTTAGACATATTTACCTAAGACAAGACCAATC 120
| |||||||||||||||||| |||||||||||||| || |||||||| |||||||||||
Sbjct 62 TCTAAGTCCTTCCCCAAAATGCCCTTGATTTAGAC--ATCTACCTAAGTCAAGACCAATC 119
Query 121 CGGGTTCGTCTTCTTCGAAATTCCATTTCTCTCCTTAAAACCACCATCGTGT-CCTGAAA 179
||||||||||||||| || ||||||| |||||||||||||||| | ||| |||
Sbjct 120 TGGGTTCGTCTTCTTC------CCTTTTCTCTATTTAAAACCACCATCGT-TCCCT-AAA 171
Query 180 TCAACAAATCTCTCAAAATCCAATGGCTTCGTTACCAGTTTTCATACCAGCCGAGTCTTT 239
|||| ||||||||||||| |||||||| | |||||||| ||||||||||| ||||| ||
Sbjct 172 TCAATGAATCTCTCAAAATTCAATGGCTGCATTACCAGTATTCATACCAGCAGAGTCATT 231
Query 240 TCCATCGATCCTCTCACATGAAACCTTGATCCATCACTTTCAGACCAATCTTCCCAAACA 299
||||||||||||||||||||||||||||||| ||||||||| |||||||||||| |||||
Sbjct 232 TCCATCGATCCTCTCACATGAAACCTTGATCAATCACTTTCGGACCAATCTTCCGAAACA 291
Query 300 TTCTTCAACAATCACAAGCCCTGTCCGGCAAAACTACACCGTTTCATCAccttcctctct 359
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 292 TTCATCAACAATCACAAGCCCTGTCCGGCAAAACTACACCGTTTCATCACCTTCCTCTCT 351
Query 360 cctcctcatgccttcttggtcatcttcttcttctctcccttACATGGGCGTCAAGCTCGT 419
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 352 CCTCCTCATGCCTTCTTGGTCATCTTCTTCTTCTCTCCCTTACATGGGCGTCAAGCTCGT 411
Query 420 GACCTATTTCCCTCATAACTCCGCTCAGAACTTACCTGGCATCCATGGATCCTACACACT 479
||||||||||||||||||||| |||||||||||||||||||||||||||||||||||||
Sbjct 412 GACCTATTTCCCTCATAACTCTTCTCAGAACTTACCTGGCATCCATGGATCCTACACACT 471
Query 480 CTTCAGCTCCACTACAGGCCAAACCCTAGCTACAATGGACGGTACTGTTTTAACCCTTTA 539
||| ||||||||||||||||||||| ||||||||||||| ||||||||||||||||||||
Sbjct 472 CTTTAGCTCCACTACAGGCCAAACCTTAGCTACAATGGATGGTACTGTTTTAACCCTTTA 531
Query 540 CCGTACTTCCTCTGTTTCAGGGTTAGGCTCCAAAATCCTAGCTAGAGACGATAGTCAAGT 599
||||||||||||||||||||| ||||| ||||||||||||||||||||||||||||||||
Sbjct 532 CCGTACTTCCTCTGTTTCAGGCTTAGGATCCAAAATCCTAGCTAGAGACGATAGTCAAGT 591
Query 600 GCTGATCATGGTTGGTTCCGGTGCTCTCGCACCACACCTGATTAAATCTCATCTAGCTGC 659
|||||||||||||||||||||||||||||||||||||||||| ||||| |||||||||||
Sbjct 592 GCTGATCATGGTTGGTTCCGGTGCTCTCGCACCACACCTGATCAAATCCCATCTAGCTGC 651
Query 660 AAAACCAAGCTTGAGAAGAGTGGTCATATGGAACAGAACTC-ATCAAAAGGCTCAGGATT 718
||||||||||||||||||||| |||||||||||||||||| | |||| ||||||||| |
Sbjct 652 GAAACCAAGCTTGAGAAGAGTGATCATATGGAACAGAACTCCA-CAAAGGGCTCAGGAGT 710
Query 719 TAGCTGAAACTCTCTCTAAGGATCCTCAACACAAGGAGATCTCATTCGAGAGCCATGATT 778
|||||||||| ||||| ||||||||||||||||||||||| |||||||| ||||| ||||
Sbjct 711 TAGCTGAAACCCTCTCCAAGGATCCTCAACACAAGGAGATTTCATTCGATAGCCACGATT 770
Query 779 CGTTAGATGAAATCATTCCTCTGGGAGATATCATAAGCTGTGCAACGAACTCAACTGTTC 838
|| ||||| ||||||||||||| |||||||| |||||||||||||| |||||||||||||
Sbjct 771 CGCTAGATCAAATCATTCCTCTAGGAGATATTATAAGCTGTGCAACAAACTCAACTGTTC 830
Query 839 CATTGGTCAAAGGTGAATTCTTGAAACCCGGAACTCATCTTGATCTTGTTGGATCGTTTA 898
|||||||||||||||| |||||||||||||||||||||||||| ||||||||||||||||
Sbjct 831 CATTGGTCAAAGGTGAGTTCTTGAAACCCGGAACTCATCTTGACCTTGTTGGATCGTTTA 890
Query 899 GCCATGAAATGAGGGAATGTGACGACAATGCGATACAAAGAGGGAGTGTGTTTGTCGATA 958
|||||||||||| |||||||||||||||||||||||| ||||||||||||||||||||||
Sbjct 891 GCCATGAAATGAAGGAATGTGACGACAATGCGATACAGAGAGGGAGTGTGTTTGTCGATA 950
Query 959 ACGACACTGCGATGGTAGAAGCAGGAGAGCTCGTGGGAGCGTTTGAAAGAGGAGTGATTA 1018
| |||||||||||| |||||||||||||||||| |||||||||||| |||||||||||||
Sbjct 951 ATGACACTGCGATGATAGAAGCAGGAGAGCTCGCGGGAGCGTTTGAGAGAGGAGTGATTA 1010
Query 1019 AGAAAGAAGACATTTCTGGGAATTTGGTGGAGTTGATCAAAGGTGACAAAGAAGGAAGAA 1078
||| ||||||||||| ||||||||||||||||||||||||||||||||||||||| ||||
Sbjct 1011 AGAGAGAAGACATTTGTGGGAATTTGGTGGAGTTGATCAAAGGTGACAAAGAAGGGAGAA 1070
Query 1079 AGATTTCAACAGAAATAACAGTGTTTAAGTCCGTTGGTTCGGGTACTGTAGATCTCTTAA 1138
||| ||||||||| |||||||||||||||||||| ||||||||||| |||||||||||||
Sbjct 1071 AGAGTTCAACAGACATAACAGTGTTTAAGTCCGTCGGTTCGGGTACCGTAGATCTCTTAA 1130
Query 1139 CTGCACAACTTGTTCACGAGACTTATCTCAGCCGTTGTTAAGTAGTGAATGAAT-AATCT 1197
| ||||||||||||||||||||||| |||||||||||||||| |||| ||||| |||||
Sbjct 1131 CCGCACAACTTGTTCACGAGACTTACCTCAGCCGTTGTTAAGCAGTG--TGAATGAATCT 1188
Query 1198 TGTTCAATCCTTGCGTTTGCAAATATTGTCACATTGTCGTTTAAACGAAATAAAATCTTG 1257
|||| ||| |||||||||| |||||| ||||||||| ||||||||||||||| | |||
Sbjct 1189 TGTTTGATCATTGCGTTTGCGAATATT-TCACATTGTTATTTAAACGAAATAAATTATTG 1247
Query 1258 CTATATGGACCTATGGTTCTGT 1279
|||||||||||||||| |||
Sbjct 1248 --ATATGGACCTATGGTTTTGT 1267
> AT5G52800.3 | Symbols: | DNA primases | chr5:21395944-21399419
FORWARD LENGTH=1954
Length=1954
Score = 152 bits (82), Expect = 8e-36
Identities = 86/88 (98%), Gaps = 0/88 (0%)
Strand=Plus/Plus
Query 1 CGAGGAAGATGATGACTGGTGGGTAGCAGCTGCAGAAGAGTCACTAAAACAAATCGCATC 60
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct 1867 CGAGGAAGATGATGACTGGTGGGTAGCAGCTGCAGAAGAGTCACTAAAACAAATCGCATC 1926
Query 61 TTTAAGTCCTTCCCCAAAATACCCTTGA 88
| |||||||||||||||||| |||||||
Sbjct 1927 TCTAAGTCCTTCCCCAAAATGCCCTTGA 1954
Lambda K H
1.33 0.621 1.12
Gapped
Lambda K H
1.28 0.460 0.850
Effective search space used: 62901282885
Database: TAIR10_cdna_20110103_representative_gene_model_updated
Posted date: Sep 25, 2014 6:13 PM
Number of letters in database: 51,074,197
Number of sequences in database: 33,602
Matrix: blastn matrix 1 -2
Gap Penalties: Existence: 0, Extension: 2.5